Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Forward (+)

12321064 .. 12321561

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG074400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCCAGCAAGTACTCCTTTCCTCATGATCCCCTCGTCAACCTCACCATAATGGCTGCTGTCAAGGCAACAGACACTGCAGAAGAATTTTTGAAGTTTCAAAACTACGAGTTGGCGATCAAGCAGGCCATGGTAGCCAAACAATTCGACCCTAATTTGCAAGGTATCGATCATTTCATCCTTGCCTACCAGATTCATAAAGCCGTGTCGGAAAAGAAAGATTGGTATCATGTTCTTGGCTTCCAAGAGGTTACTGAGTATGCGACCATCAAGAAACAATACAAAGAGTTGGCACGCTTTGTACACCGTACCCTGACAAGAATAGCTCTATTGCTGCCGAAGGCGCTTTTAACCATGTCAAAGTGGCATGTGATTTTCTTTCTGACCCTGCCAAAAATAAGGCCTACGACAAATCGTGAAGTACATCGCGATTTCAAAGGGCGTCCTATGTCAAGAACGCTAGCAAAAGGGCTTACCCTCAGGCTAAACCAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

165

Amino Acids

19.29

Weight (kDa)

9.88

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	429
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	442
AfaI	GTAC	5 cut(s)	14, 303, 310, 423, 494
AgsI	TTSAA	3 cut(s)	94, 101, 436
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
AlwI	GGATC	1 cut(s)	23
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	3 cut(s)	3, 126, 401
ApeKI	GCWGC	2 cut(s)	56, 334
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	460
AxyI	CCTNAGG	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	43, 321
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	347
BisI	GCNGC	2 cut(s)	57, 335
BlsI	GCNGC	2 cut(s)	58, 336
BmcAI	AGTACT	2 cut(s)	14, 494
BmtI	GCTAGC	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	490
Bse21I	CCTNAGG	1 cut(s)	479
Bse8I	GATNNNNATC	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	246, 493
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	43, 321
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	5, 128, 403
BshVI	ATCGAT	1 cut(s)	168
BsnI	GGCC	3 cut(s)	5, 128, 403
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	28, 117, 169
Bsp19I	CCATGG	1 cut(s)	129
Bsp68I	TCGCGA	1 cut(s)	429
BspANI	GGCC	3 cut(s)	5, 128, 403
BspCNI	CTCAG	2 cut(s)	247, 492
BspDI	ATCGAT	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	82
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	28, 117, 169
BssNI	GRCGYC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	442
BstAUI	TGTACA	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	7, 126, 295, 462
BstDEI	CTNAG	2 cut(s)	255, 479
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	3 cut(s)	31, 120, 172
BstMBI	GATC	3 cut(s)	28, 117, 169
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 134, 343
BstNSI	RCATGY	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	43, 321
Bsu15I	ATCGAT	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	479
BsuRI	GGCC	3 cut(s)	5, 128, 403
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
BtuMI	TCGCGA	1 cut(s)	429
Cac8I	GCNNGC	4 cut(s)	7, 126, 295, 462
CaiI	CAGNNNCTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	5 cut(s)	13, 302, 309, 422, 493
CviAII	CATG	5 cut(s)	26, 130, 230, 355, 368
CviQI	GTAC	5 cut(s)	13, 302, 309, 422, 493
DdeI	CTNAG	2 cut(s)	255, 479
DpnI	GATC	3 cut(s)	30, 119, 171
DpnII	GATC	3 cut(s)	28, 117, 169
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	403
Eco81I	CCTNAGG	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	5 cut(s)	29, 133, 233, 358, 371
FaiI	YATR	9 cut(s)	27, 50, 131, 198, 231, 261, 356, 369, 449
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	5 cut(s)	25, 129, 229, 354, 367
Fnu4HI	GCNGC	2 cut(s)	57, 335
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	57, 335
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	2 cut(s)	57, 335
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	5, 128, 403
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	5 cut(s)	29, 133, 233, 358, 371
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	40, 304
Hpy188I	TCNGA	2 cut(s)	211, 384
Hpy188III	TCNNGA	5 cut(s)	26, 271, 416, 428, 453
Hpy8I	GTNNAC	2 cut(s)	40, 304
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	2 cut(s)	80, 160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 134, 343
HpyF3I	CTNAG	2 cut(s)	255, 479
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	5 cut(s)	29, 133, 233, 358, 371
HspAI	GCGC	1 cut(s)	344
Kzo9I	GATC	3 cut(s)	28, 117, 169
LpnPI	CCDG	6 cut(s)	19, 110, 203, 326, 401, 466
Lsp1109I	GCAGC	2 cut(s)	43, 321
MaeI	CTAG	1 cut(s)	461
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	3 cut(s)	30, 119, 171
MboI	GATC	3 cut(s)	28, 117, 169
MboII	GAAGA	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	86, 143, 154
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	33, 44, 53, 241, 488
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	65, 134, 343
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	28, 117, 169
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	5 cut(s)	29, 133, 233, 358, 371
NruI	TCGCGA	1 cut(s)	429
NspI	RCATGY	1 cut(s)	371
PagI	TCATGA	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	58, 336
PstI	CTGCAG	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	77
RruI	TCGCGA	1 cut(s)	429
RsaI	GTAC	5 cut(s)	14, 303, 310, 423, 494
RsaNI	GTAC	5 cut(s)	13, 302, 309, 422, 493
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	2 cut(s)	57, 335
Sau3AI	GATC	3 cut(s)	28, 117, 169
ScaI	AGTACT	2 cut(s)	14, 494
SetI	ASST	4 cut(s)	45, 166, 252, 328
SfcI	CTRYAG	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	86, 143, 154
SseBI	AGGCCT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	461
StuI	AGGCCT	1 cut(s)	403
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	147, 168
TasI	AATT	3 cut(s)	86, 143, 154
TatI	WGTACW	4 cut(s)	12, 301, 421, 492
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	56, 334
TspDTI	ATGAA	2 cut(s)	166, 185
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	371
XspI	CTAG	1 cut(s)	461
ZrmI	AGTACT	2 cut(s)	14, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.