Rh1BG059900

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001405
Physical Location & Seq
Forward (+)
8761103 .. 8761453
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG059900.1

Sequence Viewer

Length: 351 bp
ATGGTAGCCAAACAATTCGACCCCGATTTGCAAGGTATCGATCATTTCATCCTTGCCTACCAGATTCATAAAGCCGTGTTGGAAAAGAAAGATTGGTATCATGTTCTTGGCTTCCAAGAGGTTACCGAGTATGCGACCATCAAGAAACAAAACAAAGAGTTGGCACGCTTTGTACACCCTGACAAGAATAGCTCTATTGCTGCCGAAGGCGCTTTCAACCATGTCAAAGTGGCATGGGATTTTCTTTCTGACCCTGCCAAAGAAGGCCTACGACAAGTCGTTAAGTACATCGCGATTTCAAAGGGCGTCCTATGTCAAGAACACTTGCAAAAGGGCTTGCCCTCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

116

Amino Acids

13.16

Weight (kDa)

7.88

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 31 - 87 2.5e-12 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 2 cut(s) 174, 287
AgsI TTSAA 2 cut(s) 217, 300
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 343
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 306
Bse21I CCTNAGG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 39
BseGI GGATG 1 cut(s) 48
BseJI GATNNNNATC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 1 cut(s) 267
BshVI ATCGAT 1 cut(s) 39
BsnI GGCC 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 172
Bsp143I GATC 1 cut(s) 40
Bsp68I TCGCGA 1 cut(s) 293
BspANI GGCC 1 cut(s) 267
BspDI ATCGAT 1 cut(s) 39
BspFNI CGCG 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 172
BssMI GATC 1 cut(s) 40
BssNI GRCGYC 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 166, 338
BstDEI CTNAG 1 cut(s) 343
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstPI GGTNACC 1 cut(s) 121
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 343
BsuRI GGCC 1 cut(s) 267
BsuTUI ATCGAT 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 48
BtuMI TCGCGA 1 cut(s) 293
Cac8I GCNNGC 2 cut(s) 166, 338
CfoI GCGC 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 39
CseI GACGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 173, 286
CviAII CATG 3 cut(s) 101, 221, 234
CviJI RGCY 7 cut(s) 8, 74, 111, 192, 267, 336, 348
CviKI_1 RGCY 7 cut(s) 8, 74, 111, 192, 267, 336, 348
CviQI GTAC 2 cut(s) 173, 286
DdeI CTNAG 1 cut(s) 343
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 343
Eco91I GGTNACC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 121
FaeI CATG 3 cut(s) 104, 224, 237
FaiI YATR 6 cut(s) 69, 102, 132, 222, 235, 313
FatI CATG 3 cut(s) 100, 220, 233
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 1 cut(s) 267
HgaI GACGC 1 cut(s) 295
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 3 cut(s) 104, 224, 237
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 3 cut(s) 142, 292, 317
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 200, 257
HpyCH4V TGCA 2 cut(s) 31, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 343
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 3 cut(s) 104, 224, 237
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 74, 192, 267, 330
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MluCI AATT 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 1 cut(s) 112
MseI TTAA 1 cut(s) 282
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 104, 224, 237
NruI TCGCGA 1 cut(s) 293
PceI AGGCCT 1 cut(s) 267
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 202
PspEI GGTNACC 1 cut(s) 121
RruI TCGCGA 1 cut(s) 293
RsaI GTAC 2 cut(s) 174, 287
RsaNI GTAC 2 cut(s) 173, 286
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 40
SetI ASST 3 cut(s) 37, 123, 194
Sse9I AATT 1 cut(s) 14
SseBI AGGCCT 1 cut(s) 267
StuI AGGCCT 1 cut(s) 267
TaqI TCGA 2 cut(s) 18, 39
TasI AATT 1 cut(s) 14
TatI WGTACW 2 cut(s) 172, 285
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 37, 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.