Rh1DG077200

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001405
Physical Location & Seq
Forward (+)
14242060 .. 14243909
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG077200.1

Sequence Viewer

Length: 417 bp
ATGGCCTCTACATCGTCCCAGAATAATCAAGAGGCTGCTACCAAGGGACGAGACGCAGCAGAAGCCTATTTCAAGCTCGGAAACTTGGACTCTGCAATCAATGAGGCCATGGAAGCTAAAAACCACGACCCGGATTCGCCCTATATCGACAATTTCATCACAGCTTACAGGATTCACAAAGCCGTGTCAGACAAGAAAAGCTGGTACGAGGTTCTCGGCATCCCCGAAACAGCCGACTCTCAAACCATTAAGAAACAATACAAGGAATTGGCACTAGTTGTGCACCCCGACAAGAACAGTTCTCTCGCCGCCGACGGTGCTTTCAGGCATGTCAAAACCGCCTTGGACATTCTCTCCGACCCCCAACAAAAGGAGGATTACGACAAATCATTGAGTCGTCGTGGTTCTGCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

138

Amino Acids

15.26

Weight (kDa)

5.78

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 68 - 128 7.6e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 309, 339
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 130, 370
AgsI TTSAA 1 cut(s) 73
AhlI ACTAGT 1 cut(s) 274
AluBI AGCT 4 cut(s) 76, 116, 164, 201
AluI AGCT 4 cut(s) 76, 116, 164, 201
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 45
Alw44I GTGCAC 1 cut(s) 281
AoxI GGCC 2 cut(s) 3, 105
ApaLI GTGCAC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 35, 56
AsuC2I CCSGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 22, 68
BceAI ACGGC 1 cut(s) 167
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 45
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 2 cut(s) 275, 415
BisI GCNGC 3 cut(s) 36, 57, 309
BlsI GCNGC 3 cut(s) 37, 58, 310
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 42, 108, 342
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 370
BseDI CCNNGG 3 cut(s) 42, 108, 342
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 2 cut(s) 130, 370
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 2 cut(s) 22, 68
BshFI GGCC 2 cut(s) 5, 107
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 130, 370
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 2 cut(s) 5, 107
Bsp1286I GDGCHC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 309, 339
BspANI GGCC 2 cut(s) 5, 107
BssECI CCNNGG 3 cut(s) 42, 108, 342
BssT1I CCWWGG 3 cut(s) 42, 108, 342
Bst4CI ACNGT 2 cut(s) 299, 317
BstC8I GCNNGC 1 cut(s) 412
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 62, 113, 317
BstNSI RCATGY 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 22, 68
BsuRI GGCC 2 cut(s) 5, 107
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 412
CseI GACGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 109, 329
CviQI GTAC 1 cut(s) 205
Eco130I CCWWGG 3 cut(s) 42, 108, 342
EcoT14I CCWWGG 3 cut(s) 42, 108, 342
ErhI CCWWGG 3 cut(s) 42, 108, 342
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 2 cut(s) 112, 332
FaiI YATR 3 cut(s) 110, 144, 330
FaqI GGGAC 1 cut(s) 60
FatI CATG 2 cut(s) 108, 328
Fnu4HI GCNGC 3 cut(s) 36, 57, 309
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 36, 57, 309
FspBI CTAG 2 cut(s) 275, 415
GluI GCNGC 3 cut(s) 36, 57, 309
HaeIII GGCC 2 cut(s) 5, 107
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 112, 332
HinfI GANTC 5 cut(s) 89, 134, 172, 236, 394
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 80, 190, 358
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 2 cut(s) 317, 402
HpyCH4III ACNGT 2 cut(s) 299, 317
HpyCH4V TGCA 2 cut(s) 95, 283
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 113, 317
Hsp92II CATG 2 cut(s) 112, 332
LpnPI CCDG 5 cut(s) 32, 144, 154, 187, 310
Lsp1109I GCAGC 2 cut(s) 22, 68
LweI GCATC 1 cut(s) 228
MaeI CTAG 2 cut(s) 275, 415
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 2 cut(s) 151, 266
MlyI GAGTC 3 cut(s) 83, 230, 403
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 5 cut(s) 16, 25, 97, 202, 367
MseI TTAA 1 cut(s) 249
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 62, 113, 317
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 108
NlaIII CATG 2 cut(s) 112, 332
NmeAIII GCCGAG 1 cut(s) 195
NspI RCATGY 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 134, 172
PkrI GCNGC 3 cut(s) 37, 58, 310
PleI GAGTC 3 cut(s) 83, 230, 402
PpsI GAGTC 3 cut(s) 83, 230, 402
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 3 cut(s) 36, 57, 309
SchI GAGTC 3 cut(s) 83, 230, 403
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 285
SetI ASST 5 cut(s) 78, 118, 166, 203, 213
SfaNI GCATC 1 cut(s) 228
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 2 cut(s) 151, 266
SsiI CCGC 2 cut(s) 309, 339
SspMI CTAG 2 cut(s) 275, 415
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 3 cut(s) 42, 108, 342
TaaI ACNGT 2 cut(s) 299, 317
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 151, 266
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 2 cut(s) 134, 172
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 2 cut(s) 35, 56
TspDTI ATGAA 1 cut(s) 145
VneI GTGCAC 1 cut(s) 281
XceI RCATGY 1 cut(s) 332
XspI CTAG 2 cut(s) 275, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.