Rw0G003140

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00104
OG0001405
Physical Location & Seq
Reverse (-)
18953 .. 19551
599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003140.1

Sequence Viewer

Length: 570 bp
ATGGCCAGCAAGTACTCCTTTCCTCATGATCCCCTCGTCAACCTCACCATAATGGCTGCTGTCAAGGCAAAAGACACTGCAGAAGAATTTTTGAAGCTTCAAAACTACGAGTTGGCGATCAAGCAGGCCATGGTAGCCAAACAATTCGACCCAATTTGCAAGATTCATAAAGCCGTGTCGGAAAAGAAAGATTGGTATCATGTTCTTGGCTTCCAAGAGGTTACTGAGTATTCGACCATCAAGAAACAATACAAAGAGTTGGCACGCTTTGTACACCCTGACAAGAATAGCTCTATTGCTGCCGAAGGCGCTTTTAACCATGTCAAAATGGCATGTGATTTTCTTTCTGACCCTGCCAAAAACAAGGCCTACGACAAGTCGTTAAGTACATCGCGATTTCAAAGGGCGTCCTATGTCAAGAACACTAGCAAAAGGACTTACCCTCAGGCTAAGACCAGTACTAAAGATGATCGTGGTTTCTGTAAGAGAACAGTAAACATAATAAGGAAAACGAATACTGACCAAAACACGAGTACTACTCTGAGGTTGTCAGTACGTCGTGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

189

Amino Acids

21.61

Weight (kDa)

9.74

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 64 - 125 1.1e-15 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 394
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 407
AfaI GTAC 6 cut(s) 14, 273, 388, 460, 535, 555
AgsI TTSAA 3 cut(s) 94, 101, 401
AluBI AGCT 2 cut(s) 97, 291
AluI AGCT 2 cut(s) 97, 291
AlwI GGATC 1 cut(s) 23
AoxI GGCC 3 cut(s) 3, 126, 366
ApeKI GCWGC 2 cut(s) 56, 299
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 37
AxyI CCTNAGG 1 cut(s) 444
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 529
BbvI GCAGC 2 cut(s) 43, 286
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 158
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 312
BisI GCNGC 2 cut(s) 57, 300
BlsI GCNGC 2 cut(s) 58, 301
BmcAI AGTACT 3 cut(s) 14, 460, 535
BplI GAGNNNNNCTC 2 cut(s) 523, 555
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 456
Bse21I CCTNAGG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 195
BseMII CTCAG 3 cut(s) 216, 458, 533
BseNI ACTGG 1 cut(s) 456
BseXI GCAGC 2 cut(s) 43, 286
Bsh1236I CGCG 1 cut(s) 394
BshFI GGCC 3 cut(s) 5, 128, 368
BsnI GGCC 3 cut(s) 5, 128, 368
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 3 cut(s) 28, 117, 469
Bsp19I CCATGG 1 cut(s) 129
Bsp68I TCGCGA 1 cut(s) 394
BspANI GGCC 3 cut(s) 5, 128, 368
BspCNI CTCAG 3 cut(s) 217, 457, 534
BspFNI CGCG 1 cut(s) 394
BspHI TCATGA 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 28, 117, 469
BssNI GRCGYC 1 cut(s) 407
BssSI CACGAG 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 529
Bst4CI ACNGT 1 cut(s) 493
BstACI GRCGYC 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 3 cut(s) 7, 126, 265
BstDEI CTNAG 5 cut(s) 225, 444, 450, 542, 567
BstDSI CCRYGG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 394
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 3 cut(s) 31, 120, 472
BstMBI GATC 3 cut(s) 28, 117, 469
BstMWI GCNNNNNNNGC 3 cut(s) 65, 134, 308
BstNSI RCATGY 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 78
BstUI CGCG 1 cut(s) 394
BstV1I GCAGC 2 cut(s) 43, 286
Bsu36I CCTNAGG 1 cut(s) 444
BsuRI GGCC 3 cut(s) 5, 128, 368
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BtuMI TCGCGA 1 cut(s) 394
Cac8I GCNNGC 3 cut(s) 7, 126, 265
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 311
CseI GACGC 1 cut(s) 396
Csp6I GTAC 6 cut(s) 13, 272, 387, 459, 534, 554
CviAII CATG 5 cut(s) 26, 130, 200, 320, 333
CviQI GTAC 6 cut(s) 13, 272, 387, 459, 534, 554
DdeI CTNAG 5 cut(s) 225, 444, 450, 542, 567
DpnI GATC 3 cut(s) 30, 119, 471
DpnII GATC 3 cut(s) 28, 117, 469
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 368
Eco81I CCTNAGG 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 5 cut(s) 29, 133, 203, 323, 336
FaiI YATR 9 cut(s) 27, 50, 131, 168, 201, 321, 334, 414, 500
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 5 cut(s) 25, 129, 199, 319, 332
Fnu4HI GCNGC 2 cut(s) 57, 300
Fsp4HI GCNGC 2 cut(s) 57, 300
FspBI CTAG 1 cut(s) 426
GlaI GCGC 1 cut(s) 310
GluI GCNGC 2 cut(s) 57, 300
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 3 cut(s) 5, 128, 368
HgaI GACGC 1 cut(s) 396
HhaI GCGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 407
Hin1II CATG 5 cut(s) 29, 133, 203, 323, 336
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 163
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 40, 274, 496
Hpy188I TCNGA 3 cut(s) 181, 349, 543
Hpy188III TCNNGA 4 cut(s) 26, 241, 393, 418
Hpy8I GTNNAC 3 cut(s) 40, 274, 496
Hpy99I CGWCG 1 cut(s) 561
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 2 cut(s) 80, 159
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 134, 308
HpyF3I CTNAG 5 cut(s) 225, 444, 450, 542, 567
HpySE526I ACGT 1 cut(s) 556
Hsp92I GRCGYC 1 cut(s) 407
Hsp92II CATG 5 cut(s) 29, 133, 203, 323, 336
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 3 cut(s) 28, 117, 469
LpnPI CCDG 6 cut(s) 19, 110, 291, 366, 431, 469
Lsp1109I GCAGC 2 cut(s) 43, 286
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 30, 119, 471
MboI GATC 3 cut(s) 28, 117, 469
MboII GAAGA 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 86, 143, 153
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 33, 44, 53, 211, 453, 537
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 315, 383
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 5
MvnI CGCG 1 cut(s) 394
MwoI GCNNNNNNNGC 3 cut(s) 65, 134, 308
NcoI CCATGG 1 cut(s) 129
NdeII GATC 3 cut(s) 28, 117, 469
NlaIII CATG 5 cut(s) 29, 133, 203, 323, 336
NruI TCGCGA 1 cut(s) 394
NspI RCATGY 1 cut(s) 336
PagI TCATGA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 368
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 58, 301
PstI CTGCAG 1 cut(s) 82
RruI TCGCGA 1 cut(s) 394
RsaI GTAC 6 cut(s) 14, 273, 388, 460, 535, 555
RsaNI GTAC 6 cut(s) 13, 272, 387, 459, 534, 554
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 315, 383
SatI GCNGC 2 cut(s) 57, 300
Sau3AI GATC 3 cut(s) 28, 117, 469
ScaI AGTACT 3 cut(s) 14, 460, 535
SetI ASST 6 cut(s) 45, 99, 222, 293, 548, 559
SfcI CTRYAG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 3 cut(s) 86, 143, 153
SseBI AGGCCT 1 cut(s) 368
SspMI CTAG 1 cut(s) 426
StuI AGGCCT 1 cut(s) 368
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 147, 233
TasI AATT 3 cut(s) 86, 143, 153
TatI WGTACW 5 cut(s) 12, 271, 386, 458, 533
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 2 cut(s) 315, 383
Tru9I TTAA 2 cut(s) 315, 383
TscAI CASTG 1 cut(s) 82
TseI GCWGC 2 cut(s) 56, 299
TspDTI ATGAA 1 cut(s) 155
TspRI CASTG 1 cut(s) 82
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 336
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 3 cut(s) 14, 460, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.