Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8325403.1

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Reverse (-)

267 .. 917

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8325403.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggcctctacatcgtcccagaataatcaagaggctgctaccaagggacgagacgcagcagaagcctatttcaagctcggaaacttggactctgcaatcaatgaggccatggaagctaaaaaccacgacctggatttgccctatatcgacaatttcatcacagcttacaggattcacaaagccgtgtcagacaagaaaagctggtacgaggttctcggcatccccgaaacagccgactctcaaaccattaagaaacaatacaaggaattggcactagttgtgcaccccgacaagaacagctctctcgccgccgacggtgctttcaggcatgtcaaaaccgccttggacattctctccgacccccaacaaaaggaggattacgacaaatcattgagtcgtcgtggttctggtaagtctttttccgacaggaatcgtacacagtttcataggtttaatgatgatgatgatgatgattatgttcagaaagctgggtgcaagaacaaacgggataggacagattggaagactaggggcaaagccaaaagggccaagactggtagaatgagagattgggattatttcataataagaagaccagcgaatgcccatgagccaaaaatattaccaaatatcgccaattttgttagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.73

Weight (kDa)

9.23

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	130
AciI	CCGC	2 cut(s)	309, 339
AfaI	GTAC	2 cut(s)	206, 436
AfiI	CCNNNNNNNGG	2 cut(s)	130, 370
AgsI	TTSAA	1 cut(s)	73
AhlI	ACTAGT	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	553, 585
AluBI	AGCT	6 cut(s)	76, 116, 164, 201, 300, 488
AluI	AGCT	6 cut(s)	76, 116, 164, 201, 300, 488
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	45
Alw44I	GTGCAC	1 cut(s)	281
AoxI	GGCC	3 cut(s)	3, 105, 546
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	35, 56
AspS9I	GGNCC	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	530, 598
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	22, 68
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	2 cut(s)	275, 528
BglI	GCCNNNNNGGC	1 cut(s)	545
BisI	GCNGC	3 cut(s)	36, 57, 309
BlsI	GCNGC	3 cut(s)	37, 58, 310
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	530, 598
BsaJI	CCNNGG	3 cut(s)	42, 108, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 370
Bse1I	ACTGG	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	42, 108, 342
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	130, 370
BseNI	ACTGG	1 cut(s)	559
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	22, 68
BseYI	CCCAGC	1 cut(s)	488
BshFI	GGCC	3 cut(s)	5, 107, 548
BsiHKAI	GWGCWC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	130, 370
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	3 cut(s)	5, 107, 548
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	309, 339
BspANI	GGCC	3 cut(s)	5, 107, 548
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	42, 108, 342
BssT1I	CCWWGG	3 cut(s)	42, 108, 342
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	317, 441
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 113, 317, 545
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	22, 68
BstV2I	GAAGAC	2 cut(s)	530, 598
BsuRI	GGCC	3 cut(s)	5, 107, 548
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	546
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	205, 435
CviAII	CATG	3 cut(s)	109, 329, 608
CviQI	GTAC	2 cut(s)	205, 435
Eco130I	CCWWGG	3 cut(s)	42, 108, 342
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	3 cut(s)	42, 108, 342
ErhI	CCWWGG	3 cut(s)	42, 108, 342
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	3 cut(s)	112, 332, 611
FaiI	YATR	7 cut(s)	110, 144, 330, 447, 477, 584, 609
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	3 cut(s)	108, 328, 607
Fnu4HI	GCNGC	3 cut(s)	36, 57, 309
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	3 cut(s)	36, 57, 309
FspBI	CTAG	2 cut(s)	275, 528
GluI	GCNGC	3 cut(s)	36, 57, 309
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	5, 107, 548
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	112, 332, 611
HinfI	GANTC	5 cut(s)	89, 172, 236, 394, 430
Hpy166II	GTNNAC	2 cut(s)	283, 437
Hpy188I	TCNGA	5 cut(s)	80, 190, 358, 424, 483
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	2 cut(s)	283, 437
Hpy99I	CGWCG	2 cut(s)	317, 402
HpyCH4III	ACNGT	2 cut(s)	317, 441
HpyCH4V	TGCA	3 cut(s)	95, 283, 495
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 113, 317, 545
Hsp92II	CATG	3 cut(s)	112, 332, 611
Lsp1109I	GCAGC	2 cut(s)	22, 68
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	275, 528
MboII	GAAGA	2 cut(s)	535, 603
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	151, 266, 637
MlyI	GAGTC	3 cut(s)	83, 230, 403
MmeI	TCCRAC	2 cut(s)	381, 447
MnlI	CCTC	5 cut(s)	16, 25, 97, 202, 367
MseI	TTAA	2 cut(s)	249, 453
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	62, 113, 317, 545
NcoI	CCATGG	1 cut(s)	108
NlaIII	CATG	3 cut(s)	112, 332, 611
NmeAIII	GCCGAG	1 cut(s)	195
NspI	RCATGY	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	172, 430
PflMI	CCANNNNNTGG	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	37, 58, 310
PleI	GAGTC	3 cut(s)	83, 230, 402
PpsI	GAGTC	3 cut(s)	83, 230, 402
Psp6I	CCWGG	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	546
RsaI	GTAC	2 cut(s)	206, 436
RsaNI	GTAC	2 cut(s)	205, 435
SaqAI	TTAA	2 cut(s)	249, 453
SatI	GCNGC	3 cut(s)	36, 57, 309
Sau96I	GGNCC	1 cut(s)	546
SchI	GAGTC	3 cut(s)	83, 230, 403
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	9 cut(s)	78, 118, 132, 166, 203, 213, 302, 452, 490
SfaNI	GCATC	1 cut(s)	228
SpeI	ACTAGT	1 cut(s)	274
Sse9I	AATT	3 cut(s)	151, 266, 637
SsiI	CCGC	2 cut(s)	309, 339
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	2 cut(s)	275, 528
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	3 cut(s)	42, 108, 342
TaaI	ACNGT	2 cut(s)	317, 441
TaqI	TCGA	1 cut(s)	147
TasI	AATT	3 cut(s)	151, 266, 637
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	172, 430
Tru1I	TTAA	2 cut(s)	249, 453
Tru9I	TTAA	2 cut(s)	249, 453
TseI	GCWGC	2 cut(s)	35, 56
TspDTI	ATGAA	3 cut(s)	145, 434, 571
Van91I	CCANNNNNTGG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	281
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	2 cut(s)	275, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.