Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000028.1

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Reverse (-)

59249 .. 59848

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000028.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggccagcaagtactcctttcctcatgatcccctcgtcaacctcaccataatggctgctgtcaaggcaaaagacactgcagaagaatttttgaagcttcaaaactacgagttggcgatcaagcaggccatggtagccaaacaattcgaccctaatttgcaaggtatcgatcatttcatccttgcctaccagattcataaagccgtgtcggaaaagaaagattggtatcatgttcttggcttccaagaggttactgagtatgcgaccatcaagaaacaatacaaagagttggcacgctttgtacaccctgacaagaatagctctattgctgccgaaggcgcttttaaccatgtcaaaatggcatgtgattttctttctgaccctgccaaaaacaaggcctacgacaagtcgttaagtacatctcgatttcaaagggcgtcctatgtcaagaacacttgcaaaagggcttaccctcaggctaagaccagtactaaagatgatcgtggtttctgtaagagaacagtaaacataataaggaaaacgaatactgaccaaaacacgagtactactctgaggttgtcagtacgtcgtgttgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

199

Amino Acids

22.75

Weight (kDa)

9.63

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	6 cut(s)	14, 303, 418, 490, 565, 585
AgsI	TTSAA	3 cut(s)	94, 101, 431
AluBI	AGCT	2 cut(s)	97, 321
AluI	AGCT	2 cut(s)	97, 321
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	3 cut(s)	3, 126, 396
ApeKI	GCWGC	2 cut(s)	56, 329
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	559
BbvI	GCAGC	2 cut(s)	43, 316
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	342
BisI	GCNGC	2 cut(s)	57, 330
BlsI	GCNGC	2 cut(s)	58, 331
BmcAI	AGTACT	3 cut(s)	14, 490, 565
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
Bsa29I	ATCGAT	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	486
Bse21I	CCTNAGG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	246, 488, 563
BseNI	ACTGG	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	43, 316
BshFI	GGCC	3 cut(s)	5, 128, 398
BshVI	ATCGAT	1 cut(s)	168
BsnI	GGCC	3 cut(s)	5, 128, 398
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	4 cut(s)	28, 117, 169, 499
Bsp19I	CCATGG	1 cut(s)	129
BspANI	GGCC	3 cut(s)	5, 128, 398
BspCNI	CTCAG	3 cut(s)	247, 487, 564
BspDI	ATCGAT	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	28, 117, 169, 499
BssNI	GRCGYC	1 cut(s)	437
BssSI	CACGAG	1 cut(s)	559
BssT1I	CCWWGG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	559
Bst4CI	ACNGT	1 cut(s)	523
BstACI	GRCGYC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	301
BstC8I	GCNNGC	3 cut(s)	7, 126, 295
BstDEI	CTNAG	5 cut(s)	255, 474, 480, 572, 597
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	4 cut(s)	31, 120, 172, 502
BstMBI	GATC	4 cut(s)	28, 117, 169, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 134, 338
BstNSI	RCATGY	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	43, 316
Bsu15I	ATCGAT	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	5, 128, 398
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	7, 126, 295
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	341
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	6 cut(s)	13, 302, 417, 489, 564, 584
CviAII	CATG	5 cut(s)	26, 130, 230, 350, 363
CviQI	GTAC	6 cut(s)	13, 302, 417, 489, 564, 584
DdeI	CTNAG	5 cut(s)	255, 474, 480, 572, 597
DpnI	GATC	4 cut(s)	30, 119, 171, 501
DpnII	GATC	4 cut(s)	28, 117, 169, 499
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	5 cut(s)	29, 133, 233, 353, 366
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	5 cut(s)	25, 129, 229, 349, 362
Fnu4HI	GCNGC	2 cut(s)	57, 330
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	57, 330
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	2 cut(s)	57, 330
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	5, 128, 398
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	5 cut(s)	29, 133, 233, 353, 366
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	40, 304, 526
Hpy188I	TCNGA	3 cut(s)	211, 379, 573
Hpy188III	TCNNGA	4 cut(s)	26, 271, 423, 448
Hpy8I	GTNNAC	3 cut(s)	40, 304, 526
Hpy99I	CGWCG	1 cut(s)	591
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	3 cut(s)	80, 160, 459
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 134, 338
HpyF3I	CTNAG	5 cut(s)	255, 474, 480, 572, 597
HpySE526I	ACGT	1 cut(s)	586
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	5 cut(s)	29, 133, 233, 353, 366
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	28, 117, 169, 499
LpnPI	CCDG	7 cut(s)	19, 110, 203, 321, 396, 461, 499
Lsp1109I	GCAGC	2 cut(s)	43, 316
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	4 cut(s)	30, 119, 171, 501
MboI	GATC	4 cut(s)	28, 117, 169, 499
MboII	GAAGA	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	86, 143, 154
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	6 cut(s)	33, 44, 53, 241, 483, 567
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	345, 413
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	3 cut(s)	65, 134, 338
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	4 cut(s)	28, 117, 169, 499
NlaIII	CATG	5 cut(s)	29, 133, 233, 353, 366
NspI	RCATGY	1 cut(s)	366
PagI	TCATGA	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	58, 331
PstI	CTGCAG	1 cut(s)	82
RsaI	GTAC	6 cut(s)	14, 303, 418, 490, 565, 585
RsaNI	GTAC	6 cut(s)	13, 302, 417, 489, 564, 584
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	345, 413
SatI	GCNGC	2 cut(s)	57, 330
Sau3AI	GATC	4 cut(s)	28, 117, 169, 499
ScaI	AGTACT	3 cut(s)	14, 490, 565
SetI	ASST	7 cut(s)	45, 99, 166, 252, 323, 578, 589
SfcI	CTRYAG	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	86, 143, 154
SseBI	AGGCCT	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	3 cut(s)	147, 168, 424
TasI	AATT	3 cut(s)	86, 143, 154
TatI	WGTACW	5 cut(s)	12, 301, 416, 488, 563
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	345, 413
Tru9I	TTAA	2 cut(s)	345, 413
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	56, 329
TspDTI	ATGAA	2 cut(s)	166, 185
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	366
ZrmI	AGTACT	3 cut(s)	14, 490, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.