Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Forward (+)

3756794 .. 3757267

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04812.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGACCAAGCAGGCCATGGTGGCCAAAGAATTCAAACCCGATTTGCAAGGTGTGGATCACTTCATCCTAGCGTACCAGATTCATAATACCGTGTCAGAGAAGAAAGATCGGTACCATGTTCTTGGCTTCCAACAGAAGGGGCTTTCAAGCATGCATGTCAAAGTGGCATGGGACTTCCTCTCCGATCCTGCCAAAAAGAAGGCTTACGACAAGTCGTTAAGGAGTTCGCAACTTCAAGGGTCTAATGTCAAGAACACTCGCAAGAGGGCATGCCCTAAGGGGAAGACCGCTACTACTGGAGATGATCTGGCCAACAAGAAGACTATCAAGATAATGAGGACAACAGCTGCAGGCCAAAAGACCTGTGTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.94

Weight (kDa)

10.01

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	114
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	66, 182
AcoI	YGGCCR	2 cut(s)	24, 312
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	2 cut(s)	77, 116
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	37, 150, 239
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
AlwI	GGATC	2 cut(s)	66, 182
AoxI	GGCC	4 cut(s)	15, 24, 312, 355
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	114
AxyI	CCTNAGG	1 cut(s)	279
BalI	TGGCCA	2 cut(s)	26, 314
BanI	GGYRCC	1 cut(s)	114
BbsI	GAAGAC	2 cut(s)	293, 329
BbvI	GCAGC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	351
BglI	GCCNNNNNGGC	1 cut(s)	23
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	293, 329
BpmI	CTGGAG	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	304
Bse21I	CCTNAGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	4 cut(s)	17, 26, 314, 357
BshNI	GGYRCC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	17, 26, 314, 357
Bsp143I	GATC	4 cut(s)	58, 109, 187, 307
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	4 cut(s)	17, 26, 314, 357
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	2 cut(s)	66, 182
BspT107I	GGYRCC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	4 cut(s)	58, 109, 187, 307
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	4 cut(s)	15, 155, 274, 355
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	61, 112, 190, 310
BstMBI	GATC	4 cut(s)	58, 109, 187, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	3 cut(s)	157, 161, 276
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	2 cut(s)	293, 329
BstXI	CCANNNNNNTGG	1 cut(s)	125
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	17, 26, 314, 357
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	4 cut(s)	15, 155, 274, 355
Csp6I	GTAC	2 cut(s)	76, 115
CviAII	CATG	6 cut(s)	19, 119, 154, 158, 171, 273
CviJI	RGCY	8 cut(s)	17, 26, 129, 145, 206, 314, 350, 357
CviKI_1	RGCY	8 cut(s)	17, 26, 129, 145, 206, 314, 350, 357
CviQI	GTAC	2 cut(s)	76, 115
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	4 cut(s)	60, 111, 189, 309
DpnII	GATC	4 cut(s)	58, 109, 187, 307
EaeI	YGGCCR	2 cut(s)	24, 312
Eco130I	CCWWGG	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	6 cut(s)	22, 122, 157, 161, 174, 276
FaiI	YATR	7 cut(s)	20, 87, 120, 155, 159, 172, 274
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	6 cut(s)	18, 118, 153, 157, 170, 272
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	4 cut(s)	17, 26, 314, 357
Hin1II	CATG	6 cut(s)	22, 122, 157, 161, 174, 276
HinfI	GANTC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	100, 187, 377
Hpy188III	TCNNGA	2 cut(s)	253, 331
HpyAV	CCTTC	2 cut(s)	133, 196
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	49, 157, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	6 cut(s)	22, 122, 157, 161, 174, 276
KpnI	GGTACC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	58, 109, 187, 307
LpnPI	CCDG	5 cut(s)	92, 204, 285, 296, 339
Lsp1109I	GCAGC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	71
MalI	GATC	4 cut(s)	60, 111, 189, 309
MboI	GATC	4 cut(s)	58, 109, 187, 307
MboII	GAAGA	3 cut(s)	115, 298, 334
MlsI	TGGCCA	2 cut(s)	26, 314
MluCI	AATT	1 cut(s)	32
MluNI	TGGCCA	2 cut(s)	26, 314
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	191, 261, 333
Mox20I	TGGCCA	2 cut(s)	26, 314
Mph1103I	ATGCAT	1 cut(s)	159
MscI	TGGCCA	2 cut(s)	26, 314
MseI	TTAA	1 cut(s)	221
Msp20I	TGGCCA	2 cut(s)	26, 314
MspA1I	CMGCKG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	58, 109, 187, 307
NlaIII	CATG	6 cut(s)	22, 122, 157, 161, 174, 276
NlaIV	GGNNCC	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	3 cut(s)	157, 161, 276
PaeI	GCATGC	2 cut(s)	157, 276
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	77, 116
RsaNI	GTAC	2 cut(s)	76, 115
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	4 cut(s)	58, 109, 187, 307
SetI	ASST	3 cut(s)	55, 352, 368
SfcI	CTRYAG	1 cut(s)	351
SfiI	GGCCNNNNNGGCC	1 cut(s)	23
SphI	GCATGC	2 cut(s)	157, 276
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	55, 74
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	3 cut(s)	157, 161, 276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	71
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.