Rh1AG070500

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001405
Physical Location & Seq
Reverse (-)
11846510 .. 11847109
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG070500.1

Sequence Viewer

Length: 600 bp
ATGGCCAGCACTTACCCGTTTCCTCATGATCCCCTCGTTAACCTCGCCAAGATGGCTGCTGTGAAGGCACGAGATACTGCAGAAGCGTTTTTCAAGCTTCAATACTTCGAGTTGGCGATCAAGCAGGCTATGGTAGCCAAACAATTCGACCCGGATTTGCAAGACGTCGATCACTTCATCCTAGCATACCAGATTCATAAAGCAGTGTCAGAGAAGAAAGATTGGTATCATGTTCTTGGCTTCCAACAGGTTACTGACTATGTAACCATCAAGAAACAATACAAAGAATTGGCGCGCTGTGTGCACCCAGACAAGAATAGCTCTGCTGCTGCAGAAGGGGCTTTCAAGCATGTCAAAGCGGCATTGGACTTTCTCTCTGACTCTGCCAAAAAGAAGGCTTACGACAAGTTGTTAAGTACTGCGCGGTTTCAAGGGTCGTCTAAGGTCAAGAACACTCGCAAGAGGGCTTGCCCACAGGCTAAGACCAGTACTACTGGAGATGATCGGGATGTTTTCAAGAAGACTATCAAGATAATGAGGAAAACGAACCCAGGTCAAAAGACATGTTGTATGAGGATATCTGTATGTAGGGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

199

Amino Acids

22.51

Weight (kDa)

9.67

Isoelectric Point (pI)

24.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 74 - 135 5.3e-17 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
AccII CGCG 2 cut(s) 295, 424
AciI CCGC 2 cut(s) 359, 424
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 418, 490
AflIII ACRYGT 1 cut(s) 563
AgsI TTSAA 5 cut(s) 94, 101, 346, 431, 517
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 2 cut(s) 97, 321
AluI AGCT 2 cut(s) 97, 321
Alw21I GWGCWC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 3 cut(s) 56, 326, 329
AspLEI GCGC 3 cut(s) 295, 297, 424
AsuC2I CCSGG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 3 cut(s) 43, 313, 316
BccI CCATC 2 cut(s) 46, 275
BciT130I CCWGG 1 cut(s) 552
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 2 cut(s) 78, 330
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 4 cut(s) 57, 327, 330, 360
BlsI GCNGC 4 cut(s) 58, 328, 331, 361
BmcAI AGTACT 2 cut(s) 418, 490
Bme1390I CCNGG 2 cut(s) 152, 552
BmrFI CCNGG 2 cut(s) 152, 552
BpiI GAAGAC 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 550
Bse1I ACTGG 2 cut(s) 486, 499
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 550
BseGI GGATG 2 cut(s) 177, 514
BseJI GATNNNNATC 1 cut(s) 225
BseNI ACTGG 2 cut(s) 486, 499
BsePI GCGCGC 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 3 cut(s) 43, 313, 316
Bsh1236I CGCG 2 cut(s) 295, 424
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 152
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 4 cut(s) 28, 117, 169, 502
BspACI CCGC 2 cut(s) 359, 424
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 2 cut(s) 295, 424
BspHI TCATGA 1 cut(s) 25
BspMAI CTGCAG 2 cut(s) 82, 334
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 2 cut(s) 486, 499
BssECI CCNNGG 1 cut(s) 550
BssHII GCGCGC 1 cut(s) 293
BssMI GATC 4 cut(s) 28, 117, 169, 502
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 552
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 4 cut(s) 7, 126, 295, 469
BstDEI CTNAG 2 cut(s) 441, 480
BstF5I GGATG 2 cut(s) 177, 514
BstFNI CGCG 2 cut(s) 295, 424
BstHHI GCGC 3 cut(s) 295, 297, 424
BstKTI GATC 4 cut(s) 31, 120, 172, 505
BstMBI GATC 4 cut(s) 28, 117, 169, 502
BstMWI GCNNNNNNNGC 5 cut(s) 53, 65, 134, 301, 338
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 2 cut(s) 353, 567
BstSCI CCNGG 2 cut(s) 150, 550
BstSFI CTRYAG 2 cut(s) 78, 330
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 2 cut(s) 295, 424
BstV1I GCAGC 3 cut(s) 43, 313, 316
BstV2I GAAGAC 1 cut(s) 527
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 177, 514
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 4 cut(s) 7, 126, 295, 469
CciI TCATGA 1 cut(s) 25
CfoI GCGC 3 cut(s) 295, 297, 424
Csp6I GTAC 2 cut(s) 417, 489
CviAII CATG 4 cut(s) 26, 230, 350, 564
CviQI GTAC 2 cut(s) 417, 489
DdeI CTNAG 2 cut(s) 441, 480
DpnI GATC 4 cut(s) 30, 119, 171, 504
DpnII GATC 4 cut(s) 28, 117, 169, 502
EaeI YGGCCR 1 cut(s) 3
Eco32I GATATC 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 550
EcoRV GATATC 1 cut(s) 579
FaeI CATG 4 cut(s) 29, 233, 353, 567
FatI CATG 4 cut(s) 25, 229, 349, 563
Fnu4HI GCNGC 4 cut(s) 57, 327, 330, 360
FokI GGATG 2 cut(s) 164, 521
Fsp4HI GCNGC 4 cut(s) 57, 327, 330, 360
FspBI CTAG 1 cut(s) 182
GlaI GCGC 3 cut(s) 294, 296, 423
GluI GCNGC 4 cut(s) 57, 327, 330, 360
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 152
HhaI GCGC 3 cut(s) 295, 297, 424
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 4 cut(s) 29, 233, 353, 567
Hin6I GCGC 3 cut(s) 293, 295, 422
HinP1I GCGC 3 cut(s) 293, 295, 422
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 2 cut(s) 193, 380
HpaI GTTAAC 1 cut(s) 40
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 40, 304
Hpy188I TCNGA 2 cut(s) 211, 379
Hpy188III TCNNGA 6 cut(s) 26, 271, 448, 506, 517, 529
Hpy8I GTNNAC 2 cut(s) 40, 304
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 58, 329, 388
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 80, 160, 304, 332
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 65, 134, 301, 338
HpyF3I CTNAG 2 cut(s) 441, 480
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 4 cut(s) 29, 233, 353, 567
HspAI GCGC 3 cut(s) 293, 295, 422
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 4 cut(s) 28, 117, 169, 502
Lsp1109I GCAGC 3 cut(s) 43, 313, 316
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 250, 262
MalI GATC 4 cut(s) 30, 119, 171, 504
MboI GATC 4 cut(s) 28, 117, 169, 502
MboII GAAGA 2 cut(s) 226, 532
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 143, 287
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 6 cut(s) 33, 44, 53, 456, 531, 567
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 39, 413
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 152, 552
MvaI CCWGG 1 cut(s) 552
MvnI CGCG 2 cut(s) 295, 424
MwoI GCNNNNNNNGC 5 cut(s) 53, 65, 134, 301, 338
NciI CCSGG 1 cut(s) 152
NdeII GATC 4 cut(s) 28, 117, 169, 502
NlaIII CATG 4 cut(s) 29, 233, 353, 567
NspI RCATGY 2 cut(s) 353, 567
PagI TCATGA 1 cut(s) 25
PauI GCGCGC 1 cut(s) 293
PciI ACATGT 1 cut(s) 563
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 58, 328, 331, 361
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PscI ACATGT 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PstI CTGCAG 2 cut(s) 82, 334
PteI GCGCGC 1 cut(s) 293
RsaI GTAC 2 cut(s) 418, 490
RsaNI GTAC 2 cut(s) 417, 489
SaqAI TTAA 2 cut(s) 39, 413
SatI GCNGC 4 cut(s) 57, 327, 330, 360
Sau3AI GATC 4 cut(s) 28, 117, 169, 502
ScaI AGTACT 2 cut(s) 418, 490
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 152, 552
SduI GDGCHC 1 cut(s) 306
SetI ASST 7 cut(s) 45, 99, 168, 252, 323, 447, 556
SfcI CTRYAG 2 cut(s) 78, 330
Sse9I AATT 2 cut(s) 143, 287
SsiI CCGC 2 cut(s) 359, 424
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 150, 550
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 108, 147, 168
TasI AATT 2 cut(s) 143, 287
TatI WGTACW 2 cut(s) 416, 488
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 39, 413
Tru9I TTAA 2 cut(s) 39, 413
TscAI CASTG 1 cut(s) 210
TseI GCWGC 3 cut(s) 56, 326, 329
TspDTI ATGAA 2 cut(s) 166, 185
TspRI CASTG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 302
XceI RCATGY 2 cut(s) 353, 567
XspI CTAG 1 cut(s) 182
ZraI GACGTC 1 cut(s) 166
ZrmI AGTACT 2 cut(s) 418, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.