RLG00000030088

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001405
Physical Location & Seq
Reverse (-)
54984776 .. 54985348
573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030088

Sequence Viewer

Length: 573 bp
ATGGCCAGCAAGTACTCCTTTCCTCATGATCCCCTCGTCAACCTCACCATAATGGCTGCTGTCAAGGCAAAACACACTGCAGAAGAATTTTTCAAGCTTCAAAACTACGAGTTGGCGATCCAGCAGGCCATGGTAGCCAAACAATTCGACCCCGATTTGCAAGGTATGGATCATTTCATCCTTGCCTACCAGATTCATAAAGCCGTGTCGGAAAAGAAAGATTGGTATCATGTTCTTGGCTTCCAAGAGGTTACTGAGTATGCGACCATCAAGAAACAATACAAAGAGTTGGCACGCTTTGTACACCCTGACAAGAATAGCTCTATTGCTGCCGAAGGCGCTTTCAACCATGTCAAAGTGGCATGGGATTTTCTTTCTGACCCTGACAAAAGGAAGGCCTACGACAAGTCGTTAAGTACATCGCGATTTCAAAGGGCGTCCTATGTCAAGAACATTTGCAAAAGGGCTTGCCCTTGGGCTGAGACCAGTACTAAAGATGATCGTGGTTTCTGTAAGAGAGCAGTAAACATAATAAGGAAAACGAATACTGACCAAAAACGAGTACTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

191

Amino Acids

22.0

Weight (kDa)

9.39

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 74 - 135 5.6e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 424
AclWI GGATC 3 cut(s) 23, 112, 177
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 5 cut(s) 14, 303, 418, 490, 564
AgsI TTSAA 4 cut(s) 94, 101, 346, 431
AluBI AGCT 2 cut(s) 97, 321
AluI AGCT 2 cut(s) 97, 321
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 3 cut(s) 23, 112, 177
AoxI GGCC 3 cut(s) 3, 126, 396
ApeKI GCWGC 2 cut(s) 56, 329
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 37
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 43, 316
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 2 cut(s) 57, 330
BlsI GCNGC 2 cut(s) 58, 331
BmcAI AGTACT 3 cut(s) 14, 490, 564
BplI GAGNNNNNCTC 1 cut(s) 552
BsaBI GATNNNNATC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 129, 473
Bse1I ACTGG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 129, 473
BseGI GGATG 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 225
BseMII CTCAG 2 cut(s) 246, 471
BseNI ACTGG 1 cut(s) 486
BseXI GCAGC 2 cut(s) 43, 316
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 3 cut(s) 5, 128, 398
BsmAI GTCTC 1 cut(s) 476
BsnI GGCC 3 cut(s) 5, 128, 398
Bso31I GGTCTC 1 cut(s) 476
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 4 cut(s) 28, 117, 169, 499
Bsp19I CCATGG 1 cut(s) 129
Bsp68I TCGCGA 1 cut(s) 424
BspANI GGCC 3 cut(s) 5, 128, 398
BspCNI CTCAG 2 cut(s) 247, 472
BspFNI CGCG 1 cut(s) 424
BspHI TCATGA 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 3 cut(s) 23, 112, 177
BspTNI GGTCTC 1 cut(s) 476
BsrGI TGTACA 1 cut(s) 301
BsrI ACTGG 1 cut(s) 486
BssECI CCNNGG 2 cut(s) 129, 473
BssMI GATC 4 cut(s) 28, 117, 169, 499
BssNI GRCGYC 1 cut(s) 437
BssT1I CCWWGG 2 cut(s) 129, 473
BstACI GRCGYC 1 cut(s) 437
BstAUI TGTACA 1 cut(s) 301
BstC8I GCNNGC 4 cut(s) 7, 126, 295, 469
BstDEI CTNAG 2 cut(s) 255, 480
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 4 cut(s) 31, 120, 172, 502
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 4 cut(s) 28, 117, 169, 499
BstMWI GCNNNNNNNGC 3 cut(s) 65, 134, 338
BstSFI CTRYAG 1 cut(s) 78
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 43, 316
BsuRI GGCC 3 cut(s) 5, 128, 398
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 405
BtsCI GGATG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BtuMI TCGCGA 1 cut(s) 424
Cac8I GCNNGC 4 cut(s) 7, 126, 295, 469
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 341
CseI GACGC 1 cut(s) 426
Csp6I GTAC 5 cut(s) 13, 302, 417, 489, 563
CviAII CATG 5 cut(s) 26, 130, 230, 350, 363
CviQI GTAC 5 cut(s) 13, 302, 417, 489, 563
DdeI CTNAG 2 cut(s) 255, 480
DpnI GATC 4 cut(s) 30, 119, 171, 501
DpnII GATC 4 cut(s) 28, 117, 169, 499
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 129, 473
Eco147I AGGCCT 1 cut(s) 398
Eco31I GGTCTC 1 cut(s) 476
EcoT14I CCWWGG 2 cut(s) 129, 473
ErhI CCWWGG 2 cut(s) 129, 473
FaeI CATG 5 cut(s) 29, 133, 233, 353, 366
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 5 cut(s) 25, 129, 229, 349, 362
Fnu4HI GCNGC 2 cut(s) 57, 330
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 57, 330
GlaI GCGC 1 cut(s) 340
GluI GCNGC 2 cut(s) 57, 330
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 3 cut(s) 5, 128, 398
HgaI GACGC 1 cut(s) 426
HhaI GCGC 1 cut(s) 341
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 5 cut(s) 29, 133, 233, 353, 366
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 193
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 40, 304, 526
Hpy188I TCNGA 3 cut(s) 211, 379, 572
Hpy188III TCNNGA 4 cut(s) 26, 271, 423, 448
Hpy8I GTNNAC 3 cut(s) 40, 304, 526
HpyAV CCTTC 2 cut(s) 329, 388
HpyCH4V TGCA 3 cut(s) 80, 160, 459
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 134, 338
HpyF3I CTNAG 2 cut(s) 255, 480
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 5 cut(s) 29, 133, 233, 353, 366
HspAI GCGC 1 cut(s) 339
Kzo9I GATC 4 cut(s) 28, 117, 169, 499
LpnPI CCDG 7 cut(s) 19, 110, 134, 203, 321, 396, 499
Lsp1109I GCAGC 2 cut(s) 43, 316
MaeIII GTNAC 1 cut(s) 250
MalI GATC 4 cut(s) 30, 119, 171, 501
MboI GATC 4 cut(s) 28, 117, 169, 499
MboII GAAGA 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 86, 143
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 4 cut(s) 33, 44, 53, 241
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 5
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 3 cut(s) 65, 134, 338
NcoI CCATGG 1 cut(s) 129
NdeII GATC 4 cut(s) 28, 117, 169, 499
NlaIII CATG 5 cut(s) 29, 133, 233, 353, 366
NruI TCGCGA 1 cut(s) 424
PagI TCATGA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 398
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 2 cut(s) 58, 331
PstI CTGCAG 1 cut(s) 82
RruI TCGCGA 1 cut(s) 424
RsaI GTAC 5 cut(s) 14, 303, 418, 490, 564
RsaNI GTAC 5 cut(s) 13, 302, 417, 489, 563
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 2 cut(s) 57, 330
Sau3AI GATC 4 cut(s) 28, 117, 169, 499
ScaI AGTACT 3 cut(s) 14, 490, 564
SetI ASST 5 cut(s) 45, 99, 166, 252, 323
SfcI CTRYAG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 2 cut(s) 86, 143
SseBI AGGCCT 1 cut(s) 398
StuI AGGCCT 1 cut(s) 398
StyI CCWWGG 2 cut(s) 129, 473
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 86, 143
TatI WGTACW 5 cut(s) 12, 301, 416, 488, 562
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 1 cut(s) 82
TseI GCWGC 2 cut(s) 56, 329
TspDTI ATGAA 2 cut(s) 166, 185
TspRI CASTG 1 cut(s) 82
XapI RAATTY 1 cut(s) 86
ZrmI AGTACT 3 cut(s) 14, 490, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.