Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Forward (+)

4568807 .. 4569633

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTTTCTTCTTTGAATTTCAAGAGCAATAGGACGGCCACTGGCCGCAGCAGAATCCCCAGCAACTCCATCCCTCAAGCTTTGTGTCCCGATCCCATCACCAACCTCGTACAAATGGCTGCGGTCAAGGCCAGAGAGGCTGCAGAAGCATACTTCACGCTTCGACATTTCGACTGTGCGATCATGCAGGCAAGGGCAGCCAAAGAGTTGTATCCAGAGTTCCCTGGTATGGACAATTACATGGCCGCATACCAAATTCATTCTGCCGTATCACACAAGAAAAACTGGTACCATATTCTTGGCATCCCCAACCCTGCCATTGCCGACTCTGAAGCCATCAAGAAACAATACAAGAGATTGGCGCTTGCCTTGCACCCTGATAAGAACTGGTCTATTGCTGCGGATGGTGCTTTCAAGTATGTTAAAGCAGCCTGGGATGTTCTCTCCGACCGTGCGAAAAGAGAGGCTTACGACAAGTCTTTAAGTCCGAGGTCTCAAGGGGCTCGTGGTTCCAATAACAGCAAACCAGCGCAGCAGCAGAGGTCCAATGCCTGTTCTCGCAAAAGGGCCGGCCCTGATGCTAATTCTACCGGAGGAGATGGGAGTTTCTACAAGAAAACCATTAAGATTGTAAGAAAATCAAATCCGGGCCAAAGGGCGACTGTTGTGATGTTATCAGTATGCCGGGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

232

Amino Acids

25.45

Weight (kDa)

10.01

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	288
AciI	CCGC	4 cut(s)	46, 122, 246, 401
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	3 cut(s)	36, 43, 243
AcsI	RAATTY	2 cut(s)	16, 255
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	111, 290
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	16, 22, 415
AjnI	CCWGG	2 cut(s)	223, 431
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	7 cut(s)	36, 43, 129, 243, 567, 571, 649
ApeKI	GCWGC	8 cut(s)	48, 119, 140, 197, 398, 428, 532, 535
ApoI	RAATTY	2 cut(s)	16, 255
Asp718I	GGTACC	1 cut(s)	288
AspLEI	GCGC	2 cut(s)	364, 532
AspS9I	GGNCC	4 cut(s)	543, 567, 572, 649
AsuC2I	CCSGG	2 cut(s)	648, 686
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	505
BauI	CACGAG	1 cut(s)	504
BbvI	GCAGC	8 cut(s)	60, 106, 127, 209, 385, 440, 544, 547
BccI	CCATC	5 cut(s)	77, 104, 344, 398, 593
BceAI	ACGGC	2 cut(s)	51, 251
BciT130I	CCWGG	2 cut(s)	225, 433
BciVI	GTATCC	1 cut(s)	222
BcnI	CCSGG	2 cut(s)	648, 686
BcoDI	GTCTC	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	222
BglI	GCCNNNNNGGC	1 cut(s)	137
Bme1390I	CCNGG	4 cut(s)	225, 433, 648, 686
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	4 cut(s)	543, 567, 572, 649
BmiI	GGNNCC	2 cut(s)	290, 511
BmrFI	CCNGG	4 cut(s)	225, 433, 648, 686
BmsI	GCATC	2 cut(s)	312, 568
BpuEI	CTTGAG	2 cut(s)	60, 480
BpuMI	CCSGG	2 cut(s)	648, 686
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	223, 432, 488
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	3 cut(s)	46, 290, 392
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	225, 433
BseDI	CCNNGG	3 cut(s)	223, 432, 488
BseGI	GGATG	4 cut(s)	69, 303, 409, 442
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	3 cut(s)	46, 290, 392
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	8 cut(s)	60, 106, 127, 209, 385, 440, 544, 547
BseYI	CCCAGC	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	7 cut(s)	38, 45, 131, 245, 569, 573, 651
BshNI	GGYRCC	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	451
BsiSI	CCGG	4 cut(s)	570, 591, 647, 685
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	7 cut(s)	38, 45, 131, 245, 569, 573, 651
Bso31I	GGTCTC	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	2 cut(s)	91, 180
BspACI	CCGC	4 cut(s)	46, 122, 246, 401
BspANI	GGCC	7 cut(s)	38, 45, 131, 245, 569, 573, 651
BspLI	GGNNCC	2 cut(s)	290, 511
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	3 cut(s)	46, 290, 392
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	3 cut(s)	223, 432, 488
BssMI	GATC	2 cut(s)	91, 180
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	225, 433
Bst4CI	ACNGT	3 cut(s)	176, 452, 664
BstC8I	GCNNGC	3 cut(s)	189, 366, 571
BstF5I	GGATG	4 cut(s)	69, 303, 409, 442
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	2 cut(s)	364, 532
BstKTI	GATC	2 cut(s)	94, 183
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	2 cut(s)	91, 180
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 137, 146, 197, 370, 407
BstNI	CCWGG	2 cut(s)	225, 433
BstSCI	CCNGG	4 cut(s)	223, 431, 646, 684
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	8 cut(s)	60, 106, 127, 209, 385, 440, 544, 547
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	7 cut(s)	38, 45, 131, 245, 569, 573, 651
BtsCI	GGATG	4 cut(s)	69, 303, 409, 442
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	189, 366, 571
CfoI	GCGC	2 cut(s)	364, 532
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	4 cut(s)	543, 567, 572, 649
Csp6I	GTAC	2 cut(s)	110, 289
CviAII	CATG	2 cut(s)	184, 241
CviQI	GTAC	2 cut(s)	110, 289
DpnI	GATC	2 cut(s)	93, 182
DpnII	GATC	2 cut(s)	91, 180
EaeI	YGGCCR	3 cut(s)	36, 43, 243
Eco24I	GRGCYC	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	223, 431
EcoT38I	GRGCYC	1 cut(s)	505
FaeI	CATG	2 cut(s)	187, 244
FaiI	YATR	8 cut(s)	151, 185, 230, 242, 250, 294, 420, 682
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	2 cut(s)	183, 240
FokI	GGATG	4 cut(s)	56, 290, 416, 449
FriOI	GRGCYC	1 cut(s)	505
FseI	GGCCGGCC	1 cut(s)	573
GlaI	GCGC	2 cut(s)	363, 531
GsaI	CCCAGC	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	7 cut(s)	38, 45, 131, 245, 569, 573, 651
HapII	CCGG	4 cut(s)	570, 591, 647, 685
HhaI	GCGC	2 cut(s)	364, 532
Hin1II	CATG	2 cut(s)	187, 244
Hin6I	GCGC	2 cut(s)	362, 530
HinP1I	GCGC	2 cut(s)	362, 530
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	2 cut(s)	54, 326
HpaII	CCGG	4 cut(s)	570, 591, 647, 685
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	3 cut(s)	331, 448, 489
Hpy188III	TCNNGA	4 cut(s)	22, 89, 215, 340
HpyCH4III	ACNGT	3 cut(s)	176, 452, 664
HpyCH4V	TGCA	3 cut(s)	143, 187, 373
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 137, 146, 197, 370, 407
Hsp92II	CATG	2 cut(s)	187, 244
HspAI	GCGC	2 cut(s)	362, 530
KpnI	GGTACC	1 cut(s)	292
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
Kzo9I	GATC	2 cut(s)	91, 180
Lsp1109I	GCAGC	8 cut(s)	60, 106, 127, 209, 385, 440, 544, 547
LweI	GCATC	2 cut(s)	312, 568
MalI	GATC	2 cut(s)	93, 182
MboI	GATC	2 cut(s)	91, 180
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	4 cut(s)	16, 235, 255, 583
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	7 cut(s)	84, 116, 130, 457, 483, 534, 587
MroNI	GCCGGC	1 cut(s)	569
MseI	TTAA	4 cut(s)	423, 482, 624, 694
MspI	CCGG	4 cut(s)	570, 591, 647, 685
MspR9I	CCNGG	4 cut(s)	225, 433, 648, 686
MvaI	CCWGG	2 cut(s)	225, 433
MwoI	GCNNNNNNNGC	6 cut(s)	128, 137, 146, 197, 370, 407
NaeI	GCCGGC	1 cut(s)	571
NciI	CCSGG	2 cut(s)	648, 686
NdeII	GATC	2 cut(s)	91, 180
NgoMIV	GCCGGC	1 cut(s)	569
NlaIII	CATG	2 cut(s)	187, 244
NlaIV	GGNNCC	2 cut(s)	290, 511
PdiI	GCCGGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	223, 431
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	223, 431
PspN4I	GGNNCC	2 cut(s)	290, 511
PspPI	GGNCC	4 cut(s)	543, 567, 572, 649
PsrI	GAACNNNNNNTAC	2 cut(s)	203, 235
PstI	CTGCAG	1 cut(s)	145
RigI	GGCCGGCC	1 cut(s)	573
RsaI	GTAC	2 cut(s)	111, 290
RsaNI	GTAC	2 cut(s)	110, 289
SaqAI	TTAA	4 cut(s)	423, 482, 624, 694
Sau3AI	GATC	2 cut(s)	91, 180
Sau96I	GGNCC	4 cut(s)	543, 567, 572, 649
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	4 cut(s)	225, 433, 648, 686
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	4 cut(s)	82, 108, 494, 545
SfaNI	GCATC	2 cut(s)	312, 568
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	75, 495
SmoI	CTYRAG	2 cut(s)	75, 495
Sse9I	AATT	4 cut(s)	16, 235, 255, 583
SsiI	CCGC	4 cut(s)	46, 122, 246, 401
StyD4I	CCNGG	4 cut(s)	223, 431, 646, 684
TaaI	ACNGT	3 cut(s)	176, 452, 664
TaqI	TCGA	2 cut(s)	163, 171
TasI	AATT	4 cut(s)	16, 235, 255, 583
TauI	GCSGC	2 cut(s)	48, 248
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	4 cut(s)	423, 482, 624, 694
Tru9I	TTAA	4 cut(s)	423, 482, 624, 694
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	8 cut(s)	48, 119, 140, 197, 398, 428, 532, 535
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	543
XapI	RAATTY	2 cut(s)	16, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.