Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002767.1

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Reverse (-)

2031 .. 2654

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002767.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggcttctgcaatctccaagaataagaaaaaccaccaggctgctgttaaggcactagacgatgcagaggcttatttcaagctccaaaagttggactctgcaatcaaagaggctatgcaagcgaaaaatctcgaccctaatttgcccaacgtcgacaattttatcacagcatacaagattcatagggccatgtcctccaagaaaaactggtatgtgattcttggcatccccgaatctacgcatttattaactatcaataaaagatataaggaattggcactcgtggtgcaccctgataagaatgtctctgctgctgctgaaggtgctttcaagcatgttaaagctgccttggactttctctctgacccggtgagaaagaaggattacgacaggtctttaatgtcgaaaaagaagacatacgctgctgctgcggcaaggaaagccaccgattataagaatgccgcggctgctgctgcaaaggaggctgaggctgatgctgccaggagtgagattaatgcacgcaaacgacgttctagtgcgcccatgagtgaactcgagtatggcataaatctaataatgaaatactcgccaaaatacatggagcccaagttctgtgtctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

207

Amino Acids

23.13

Weight (kDa)

9.67

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	464
AciI	CCGC	3 cut(s)	431, 462, 464
AcuI	CTGAAG	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	79, 331
AjnI	CCWGG	2 cut(s)	36, 500
AloI	GAACNNNNNNTCC	1 cut(s)	593
AluBI	AGCT	2 cut(s)	82, 344
AluI	AGCT	2 cut(s)	82, 344
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	186
ApaLI	GTGCAC	1 cut(s)	287
AseI	ATTAAT	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	606
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	486
BciT130I	CCWGG	2 cut(s)	38, 502
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	56, 534
Bme1390I	CCNGG	3 cut(s)	38, 368, 502
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	3 cut(s)	38, 368, 502
BmsI	GCATC	3 cut(s)	52, 234, 484
BpiI	GAAGAC	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	348, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	38, 502
BseDI	CCNNGG	2 cut(s)	348, 462
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	310
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	291, 606
BspACI	CCGC	3 cut(s)	431, 462, 464
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	348, 462
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	2 cut(s)	38, 502
BstC8I	GCNNGC	2 cut(s)	120, 520
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	541
BstMAI	GTCTC	1 cut(s)	310
BstNI	CCWGG	2 cut(s)	38, 502
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	36, 366, 500
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	1 cut(s)	464
BstV2I	GAAGAC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	120, 520
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	186
Cfr42I	CCGCGG	1 cut(s)	465
CviAII	CATG	4 cut(s)	190, 335, 544, 598
DdeI	CTNAG	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	36, 500
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	193, 338, 547, 601
FatI	CATG	4 cut(s)	189, 334, 543, 597
FblI	GTMKAC	1 cut(s)	153
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	56, 534
GlaI	GCGC	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	4 cut(s)	193, 338, 547, 601
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	4 cut(s)	95, 178, 217, 233
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	3 cut(s)	154, 289, 551
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	3 cut(s)	154, 289, 551
Hpy99I	CGWCG	2 cut(s)	155, 531
HpyAV	CCTTC	2 cut(s)	314, 373
HpyCH4IV	ACGT	2 cut(s)	150, 529
HpyCH4V	TGCA	7 cut(s)	11, 65, 101, 118, 289, 476, 518
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	2 cut(s)	150, 529
Hsp92II	CATG	4 cut(s)	193, 338, 547, 601
HspAI	GCGC	1 cut(s)	539
KspI	CCGCGG	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	87, 601
LpnPI	CCDG	9 cut(s)	23, 50, 193, 306, 376, 381, 487, 514, 604
LweI	GCATC	3 cut(s)	52, 234, 484
MaeI	CTAG	2 cut(s)	56, 534
MaeII	ACGT	2 cut(s)	150, 529
MboII	GAAGA	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	291, 606
MluCI	AATT	3 cut(s)	139, 157, 272
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	61, 103, 205, 475, 481
MseI	TTAA	5 cut(s)	48, 248, 339, 398, 513
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	3 cut(s)	38, 368, 502
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	2 cut(s)	38, 502
MvnI	CGCG	1 cut(s)	464
NciI	CCSGG	1 cut(s)	368
NlaIII	CATG	4 cut(s)	193, 338, 547, 601
NlaIV	GGNNCC	1 cut(s)	603
NspI	RCATGY	1 cut(s)	338
PaeR7I	CTCGAG	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	178, 217, 233
PflMI	CCANNNNNTGG	1 cut(s)	91
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	513
PsiI	TTATAA	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	36, 500
PspGI	CCWGG	2 cut(s)	36, 500
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	186
PspXI	VCTCGAGB	1 cut(s)	554
SacII	CCGCGG	1 cut(s)	465
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	5 cut(s)	48, 248, 339, 398, 513
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	3 cut(s)	38, 368, 502
SduI	GDGCHC	2 cut(s)	291, 606
SetI	ASST	6 cut(s)	84, 153, 325, 346, 395, 532
SfaNI	GCATC	3 cut(s)	52, 234, 484
Sfr274I	CTCGAG	1 cut(s)	554
Sfr303I	CCGCGG	1 cut(s)	465
SgrBI	CCGCGG	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	3 cut(s)	139, 157, 272
SsiI	CCGC	3 cut(s)	431, 462, 464
SspMI	CTAG	2 cut(s)	56, 534
StyD4I	CCNGG	3 cut(s)	36, 366, 500
StyI	CCWWGG	1 cut(s)	348
TaiI	ACGT	2 cut(s)	153, 532
TaqI	TCGA	4 cut(s)	132, 153, 404, 555
TasI	AATT	3 cut(s)	139, 157, 272
TauI	GCSGC	3 cut(s)	434, 464, 467
TfiI	GAWTC	3 cut(s)	178, 217, 233
Tru1I	TTAA	5 cut(s)	48, 248, 339, 398, 513
Tru9I	TTAA	5 cut(s)	48, 248, 339, 398, 513
TspDTI	ATGAA	2 cut(s)	170, 593
Van91I	CCANNNNNTGG	1 cut(s)	91
VneI	GTGCAC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	513
XceI	RCATGY	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	2 cut(s)	56, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.