FvH4_7g03441

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001405
Physical Location & Seq
Reverse (-)
3777428 .. 3778011
584 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03441.t1

Sequence Viewer

Length: 444 bp
ATGGCCAGCACTTGCTCGTTTCCTCATGATCCCTTCATCAACCTTGCCAAGATGGCTGCTGTAAAGGCACTAGATACCGCAGAAGAGTTCTTCAAGCTTCAGTACACCGAATTGGCGATCAAGCAAGCCATGGTGGCCAAAGAATTCGACCCCGACTTGCAAGACAAGAACAGCTCTGTTGCTGCAGAAGGAGCTTTCAAGCATGTCAAAGCGGCTTGGGACTTTCTCTCTAACCCTGCCAAAAAGAAGGCTTACGACAAGTCGTTAAAGACTCCGGAGTTTCAAGGGTCACATGTGAAGAACAGTCGCAAAAGGGCTTGCCCTAAGGGGAAGACCCCTACTACTGGAGATGGTCTTTTCAAGAAGACTATCAAGATAATGAGGACAACAAGCTCAGGCCAAAAGACCTGTTGTATGAGGATATCTGTTTGCAGGATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

148

Amino Acids

16.25

Weight (kDa)

9.63

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 45 - 86 1.4e-06 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 2 cut(s) 78, 212
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 2 cut(s) 3, 135
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 344
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 4 cut(s) 94, 199, 284, 361
AluBI AGCT 4 cut(s) 97, 174, 194, 393
AluI AGCT 4 cut(s) 97, 174, 194, 393
AlwI GGATC 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 274
AoxI GGCC 3 cut(s) 3, 135, 397
ApeKI GCWGC 2 cut(s) 56, 182
ApoI RAATTY 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 324
BalI TGGCCA 2 cut(s) 5, 137
BbsI GAAGAC 2 cut(s) 338, 371
BbvI GCAGC 2 cut(s) 43, 169
BccI CCATC 2 cut(s) 46, 344
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 183
BglI GCCNNNNNGGC 2 cut(s) 53, 134
BisI GCNGC 3 cut(s) 57, 183, 213
BlsI GCNGC 3 cut(s) 58, 184, 214
BpiI GAAGAC 2 cut(s) 338, 371
BpmI CTGGAG 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 324
BseAI TCCGGA 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 349
BseXI GCAGC 2 cut(s) 43, 169
BshFI GGCC 3 cut(s) 5, 137, 399
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 3 cut(s) 5, 137, 399
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 2 cut(s) 28, 117
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 2 cut(s) 78, 212
BspANI GGCC 3 cut(s) 5, 137, 399
BspCNI CTCAG 1 cut(s) 407
BspEI TCCGGA 1 cut(s) 274
BspHI TCATGA 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 28, 117
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 7, 126, 319
BstDEI CTNAG 2 cut(s) 324, 394
BstDSI CCRYGG 1 cut(s) 129
BstKTI GATC 2 cut(s) 31, 120
BstMBI GATC 2 cut(s) 28, 117
BstMWI GCNNNNNNNGC 4 cut(s) 53, 65, 134, 191
BstNSI RCATGY 2 cut(s) 206, 296
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 43, 169
BstV2I GAAGAC 2 cut(s) 338, 371
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 3 cut(s) 5, 137, 399
BtgI CCRYGG 1 cut(s) 129
Cac8I GCNNGC 3 cut(s) 7, 126, 319
CciI TCATGA 1 cut(s) 25
Csp6I GTAC 1 cut(s) 103
CviAII CATG 4 cut(s) 26, 130, 203, 293
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 324, 394
DpnI GATC 2 cut(s) 30, 119
DpnII GATC 2 cut(s) 28, 117
EaeI YGGCCR 2 cut(s) 3, 135
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 129
Eco32I GATATC 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 143
EcoRV GATATC 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 4 cut(s) 29, 133, 206, 296
FaiI YATR 5 cut(s) 27, 131, 204, 294, 416
FaqI GGGAC 1 cut(s) 233
FatI CATG 4 cut(s) 25, 129, 202, 292
Fnu4HI GCNGC 3 cut(s) 57, 183, 213
Fsp4HI GCNGC 3 cut(s) 57, 183, 213
FspBI CTAG 1 cut(s) 71
GluI GCNGC 3 cut(s) 57, 183, 213
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 3 cut(s) 5, 137, 399
HapII CCGG 1 cut(s) 275
Hin1II CATG 4 cut(s) 29, 133, 206, 296
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 105
Hpy188III TCNNGA 4 cut(s) 26, 275, 361, 373
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 3 cut(s) 43, 182, 241
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 160, 185, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 65, 134, 191
HpyF3I CTNAG 2 cut(s) 324, 394
Hsp92II CATG 4 cut(s) 29, 133, 206, 296
Kpn2I TCCGGA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 28, 117
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 19, 249, 288, 330, 381, 418, 421
Lsp1109I GCAGC 2 cut(s) 43, 169
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 288
MalI GATC 2 cut(s) 30, 119
MboI GATC 2 cut(s) 28, 117
MboII GAAGA 5 cut(s) 82, 95, 310, 343, 376
MlsI TGGCCA 2 cut(s) 5, 137
MluCI AATT 2 cut(s) 110, 143
MluNI TGGCCA 2 cut(s) 5, 137
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 3 cut(s) 33, 375, 411
Mox20I TGGCCA 2 cut(s) 5, 137
MroI TCCGGA 1 cut(s) 274
MscI TGGCCA 2 cut(s) 5, 137
MseI TTAA 1 cut(s) 266
Msp20I TGGCCA 2 cut(s) 5, 137
MspI CCGG 1 cut(s) 275
MwoI GCNNNNNNNGC 4 cut(s) 53, 65, 134, 191
NcoI CCATGG 1 cut(s) 129
NdeII GATC 2 cut(s) 28, 117
NlaIII CATG 4 cut(s) 29, 133, 206, 296
NmuCI GTSAC 1 cut(s) 288
NspI RCATGY 2 cut(s) 206, 296
PagI TCATGA 1 cut(s) 25
PciI ACATGT 1 cut(s) 292
PkrI GCNGC 3 cut(s) 58, 184, 214
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PscI ACATGT 1 cut(s) 292
PstI CTGCAG 1 cut(s) 187
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 3 cut(s) 57, 183, 213
Sau3AI GATC 2 cut(s) 28, 117
SchI GAGTC 1 cut(s) 265
SetI ASST 6 cut(s) 45, 99, 176, 196, 395, 410
SfcI CTRYAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 110, 143
SsiI CCGC 2 cut(s) 78, 212
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 110, 143
TatI WGTACW 1 cut(s) 102
TauI GCSGC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 2 cut(s) 56, 182
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 25
XapI RAATTY 1 cut(s) 143
XceI RCATGY 2 cut(s) 206, 296
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.