Rh1BG059200

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001405
Physical Location & Seq
Forward (+)
8718294 .. 8718695
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG059200.1

Sequence Viewer

Length: 402 bp
ATGGCTTCTGCAATCTCCAAGAATAAGAAAAACCACCAGGCTGCTGTTAAGGCATTAGACGATGCGGAGGCCTATTTCAAGCTCCAAAAGTTGGACTCTGCAATCAAAGAGGCTATGCAAGCGAAAAATCTCGACCCTAATTTGCCCAACGTCGACAATTTTATCACAGCATACAAGATTCATAGGGCCATGTCCTCCAAGAAAAACTGGTATGTGATTCTTGGCATCCCCGAATCTACGCATTTATTAACTATCAATAAAAGATATAAGGAATTGGCACTCGTGGTGCACCCTGATAAGAATGTCTCTGCTGCTGCTGAAGGTGCTTTCAAGCATGTTAAAGCTGCCTTGGACTTTCTCTCTGACCCGGTGAGAAAGAAGGATTACACGACAGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

133

Amino Acids

14.82

Weight (kDa)

9.55

Isoelectric Point (pI)

19.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 69 - 129 2e-15 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 91
AccI GTMKAC 1 cut(s) 153
AciI CCGC 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 79, 331
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 2 cut(s) 82, 344
AluI AGCT 2 cut(s) 82, 344
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 310
Alw44I GTGCAC 1 cut(s) 287
AoxI GGCC 2 cut(s) 69, 186
ApaLI GTGCAC 1 cut(s) 287
ApeKI GCWGC 4 cut(s) 41, 311, 314, 344
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 291
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 28, 298, 301, 331
BciT130I CCWGG 1 cut(s) 38
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 310
BisI GCNGC 4 cut(s) 42, 312, 315, 345
BlsI GCNGC 4 cut(s) 43, 313, 316, 346
Bme1390I CCNGG 2 cut(s) 38, 368
BmgT120I GGNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 38, 368
BmsI GCATC 2 cut(s) 52, 234
BpuMI CCSGG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 4 cut(s) 28, 298, 301, 331
BshFI GGCC 2 cut(s) 71, 188
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 310
BsnI GGCC 2 cut(s) 71, 188
Bsp1286I GDGCHC 1 cut(s) 291
BspACI CCGC 1 cut(s) 65
BspANI GGCC 2 cut(s) 71, 188
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 348
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 120
BstF5I GGATG 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 50, 119, 323
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 36, 366
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 4 cut(s) 28, 298, 301, 331
BsuRI GGCC 2 cut(s) 71, 188
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 186
CviAII CATG 2 cut(s) 190, 335
CviJI RGCY 7 cut(s) 5, 41, 71, 82, 113, 188, 344
CviKI_1 RGCY 7 cut(s) 5, 41, 71, 82, 113, 188, 344
Eco130I CCWWGG 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 2 cut(s) 193, 338
FaiI YATR 7 cut(s) 116, 172, 183, 191, 213, 267, 336
FatI CATG 2 cut(s) 189, 334
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 4 cut(s) 42, 312, 315, 345
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 4 cut(s) 42, 312, 315, 345
GluI GCNGC 4 cut(s) 42, 312, 315, 345
HaeIII GGCC 2 cut(s) 71, 188
HapII CCGG 1 cut(s) 368
Hin1II CATG 2 cut(s) 193, 338
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 4 cut(s) 95, 178, 217, 233
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 154, 289
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 2 cut(s) 154, 289
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 314, 373
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 11, 101, 118, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 119, 323
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 193, 338
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 6 cut(s) 23, 50, 193, 306, 378, 381
Lsp1109I GCAGC 4 cut(s) 28, 298, 301, 331
LweI GCATC 2 cut(s) 52, 234
MaeII ACGT 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 3 cut(s) 139, 157, 272
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 3 cut(s) 61, 103, 205
MseI TTAA 4 cut(s) 48, 248, 339, 400
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 38, 368
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 50, 119, 323
NciI CCSGG 1 cut(s) 368
NlaIII CATG 2 cut(s) 193, 338
NspI RCATGY 1 cut(s) 338
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 3 cut(s) 178, 217, 233
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 4 cut(s) 43, 313, 316, 346
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspPI GGNCC 1 cut(s) 186
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 4 cut(s) 48, 248, 339, 400
SatI GCNGC 4 cut(s) 42, 312, 315, 345
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 38, 368
SduI GDGCHC 1 cut(s) 291
SetI ASST 5 cut(s) 84, 153, 325, 346, 397
SfaNI GCATC 2 cut(s) 52, 234
Sse9I AATT 3 cut(s) 139, 157, 272
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 1 cut(s) 65
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 36, 366
StyI CCWWGG 1 cut(s) 348
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 132, 153
TasI AATT 3 cut(s) 139, 157, 272
TfiI GAWTC 3 cut(s) 178, 217, 233
Tru1I TTAA 4 cut(s) 48, 248, 339, 400
Tru9I TTAA 4 cut(s) 48, 248, 339, 400
TseI GCWGC 4 cut(s) 41, 311, 314, 344
TspDTI ATGAA 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 91
VneI GTGCAC 1 cut(s) 287
XceI RCATGY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.