Rorug01G0054600

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001405
Physical Location & Seq
Reverse (-)
9014404 .. 9015633
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0054600.1

Sequence Viewer

Length: 795 bp
ATGAGCTGCGGCGACTTCACAGTTCCAAAGGGATGCCGATTCCATCACTCCGACGAGGAGCTGCTTAGTCACTACTTGGAGGAGAAGAATCAGTGCAAGGACTCCCAGATCACGACCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCTCGCGAGTTACCAGAACTGGCGTTCACAAGGGCGGAAAGTCTGGGGAGTGTCTTGGGACAATCAAGGAAAGTGGCACATTCTGATCCTCCTAAGCAGATAGGGGACTTTGTTGTCTGCTGCTTGAAGTACAAGTCAGACAACTTTGATCATGAATTCATGATAAGGATGCTCCATTCTGCGATCGAGGTAGCAGTAACTGCAGTATGGCCTCCAATGTTGAAAATCAAGCTGATCGATGAAAACTGGGCATCGGAAGAGCTGGTAAATGTTGTTCCAATTCCCAGTAGAAATGATGATGAAACTGGTGGTGGTATGATTACAGAAGAAGAGGAATACCTGACTTTAGAGGAGGTGGAAGATATTCTTCACATTCCCATTGGCAATCGGCATGAATTGGAAGGCACGCAAACTGATCCTTGTTGTTTAGATAAGAATGATCTTTCAACCTCTGTTGAAGGTCGACCTAATAGAAGCAATTCGTCTGATCTGATTGAAGAGCTACCAGATAACCCAGAAAATCTGGATTCACTCTTTCATCCGCCTGCACCACCTCAACTGCATCAGCTATATCAGTCACCAATGTATACCACCAATGTCCATAATAATGAATGTCGTAAGAGAACATATCCATTTGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

264

Amino Acids

30.05

Weight (kDa)

4.7

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 58 6.6e-10 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccI GTMKAC 2 cut(s) 613, 737
AccII CGCG 1 cut(s) 156
AciI CCGC 3 cut(s) 9, 185, 692
AclWI GGATC 2 cut(s) 230, 560
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 5 cut(s) 277, 373, 597, 608, 647
AluBI AGCT 6 cut(s) 6, 61, 382, 412, 652, 718
AluI AGCT 6 cut(s) 6, 61, 382, 412, 652, 718
AlwI GGATC 2 cut(s) 230, 560
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 1 cut(s) 359
ApeKI GCWGC 3 cut(s) 6, 61, 270
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 2 cut(s) 513, 628
AsuHPI GGTGA 1 cut(s) 720
BauI CACGAG 1 cut(s) 146
BbvI GCAGC 2 cut(s) 48, 257
BccI CCATC 2 cut(s) 51, 125
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BclI TGATCA 1 cut(s) 298
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 4 cut(s) 7, 10, 62, 271
BlsI GCNGC 4 cut(s) 8, 11, 63, 272
BmrI ACTGGG 2 cut(s) 406, 429
BmsI GCATC 4 cut(s) 23, 309, 410, 721
BmuI ACTGGG 2 cut(s) 406, 429
Bpu10I CCTNAGC 1 cut(s) 243
Bsa29I ATCGAT 2 cut(s) 132, 387
Bse1I ACTGG 4 cut(s) 174, 401, 435, 460
BseCI ATCGAT 2 cut(s) 132, 387
BseGI GGATG 4 cut(s) 38, 120, 324, 688
BseNI ACTGG 4 cut(s) 174, 401, 435, 460
BseRI GAGGAG 3 cut(s) 71, 95, 515
BseXI GCAGC 2 cut(s) 48, 257
BsgI GTGCAG 1 cut(s) 681
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 1 cut(s) 361
BshVI ATCGAT 2 cut(s) 132, 387
BsiEI CGRYCG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 222, 269
BsmFI GGGAC 2 cut(s) 222, 269
BsnI GGCC 1 cut(s) 361
Bsp143I GATC 8 cut(s) 108, 235, 298, 333, 384, 565, 589, 637
Bsp68I TCGCGA 1 cut(s) 156
BspACI CCGC 3 cut(s) 9, 185, 692
BspANI GGCC 1 cut(s) 361
BspDI ATCGAT 2 cut(s) 132, 387
BspFNI CGCG 1 cut(s) 156
BspHI TCATGA 2 cut(s) 301, 309
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 2 cut(s) 230, 560
BspQI GCTCTTC 2 cut(s) 402, 642
BsrI ACTGG 4 cut(s) 174, 401, 435, 460
BssMI GATC 8 cut(s) 108, 235, 298, 333, 384, 565, 589, 637
BssNAI GTATAC 1 cut(s) 738
BssSI CACGAG 1 cut(s) 146
Bst1107I GTATAC 1 cut(s) 738
Bst2BI CACGAG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 3 cut(s) 402, 474, 642
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 143, 557, 696
BstDEI CTNAG 2 cut(s) 65, 243
BstF5I GGATG 4 cut(s) 38, 120, 324, 688
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 8 cut(s) 111, 238, 301, 336, 387, 568, 592, 640
BstMBI GATC 8 cut(s) 108, 235, 298, 333, 384, 565, 589, 637
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 48, 257
BstZ17I GTATAC 1 cut(s) 738
Bsu15I ATCGAT 2 cut(s) 132, 387
BsuRI GGCC 1 cut(s) 361
BsuTUI ATCGAT 2 cut(s) 132, 387
BtsCI GGATG 4 cut(s) 38, 120, 324, 688
BtsIMutI CAGTG 1 cut(s) 98
BtuMI TCGCGA 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 143, 557, 696
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 2 cut(s) 301, 309
ClaI ATCGAT 2 cut(s) 132, 387
Csp6I GTAC 1 cut(s) 280
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 3 cut(s) 302, 310, 542
CviJI RGCY 8 cut(s) 6, 61, 151, 361, 382, 412, 652, 718
CviKI_1 RGCY 8 cut(s) 6, 61, 151, 361, 382, 412, 652, 718
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 65, 243
DpnI GATC 8 cut(s) 110, 237, 300, 335, 386, 567, 591, 639
DpnII GATC 8 cut(s) 108, 235, 298, 333, 384, 565, 589, 637
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 3 cut(s) 402, 474, 642
EarI CTCTTC 3 cut(s) 402, 474, 642
EciI GGCGGA 2 cut(s) 200, 681
EcoRI GAATTC 1 cut(s) 305
FaeI CATG 3 cut(s) 305, 313, 545
FaiI YATR 9 cut(s) 303, 311, 358, 467, 543, 721, 738, 753, 778
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 2 cut(s) 222, 269
FatI CATG 3 cut(s) 301, 309, 541
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 2 cut(s) 613, 737
Fnu4HI GCNGC 4 cut(s) 7, 10, 62, 271
FokI GGATG 4 cut(s) 45, 107, 331, 675
Fsp4HI GCNGC 4 cut(s) 7, 10, 62, 271
GluI GCNGC 4 cut(s) 7, 10, 62, 271
HaeIII GGCC 1 cut(s) 361
Hin1II CATG 3 cut(s) 305, 313, 545
HincII GTYRAC 1 cut(s) 614
HindII GTYRAC 1 cut(s) 614
HinfI GANTC 4 cut(s) 39, 88, 101, 677
HphI GGTGA 1 cut(s) 720
Hpy166II GTNNAC 3 cut(s) 177, 614, 738
Hpy188I TCNGA 6 cut(s) 52, 235, 289, 406, 637, 642
Hpy188III TCNNGA 5 cut(s) 112, 155, 302, 310, 674
Hpy8I GTNNAC 3 cut(s) 177, 614, 738
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 545, 602
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 96, 141, 353, 698, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 2 cut(s) 65, 243
Hsp92II CATG 3 cut(s) 305, 313, 545
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 8 cut(s) 108, 235, 298, 333, 384, 565, 589, 637
LguI GCTCTTC 2 cut(s) 402, 642
LmnI GCTCC 2 cut(s) 58, 327
Lsp1109I GCAGC 2 cut(s) 48, 257
LweI GCATC 4 cut(s) 23, 309, 410, 721
MaeIII GTNAC 4 cut(s) 68, 159, 346, 726
MalI GATC 8 cut(s) 110, 237, 300, 335, 386, 567, 591, 639
MboI GATC 8 cut(s) 108, 235, 298, 333, 384, 565, 589, 637
MboII GAAGA 7 cut(s) 97, 419, 488, 491, 509, 521, 659
MluCI AATT 4 cut(s) 305, 429, 545, 628
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 75
MroXI GAANNNNTTC 2 cut(s) 513, 628
MslI CAYNNNNRTG 1 cut(s) 756
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 8 cut(s) 108, 235, 298, 333, 384, 565, 589, 637
NlaIII CATG 3 cut(s) 305, 313, 545
NmuCI GTSAC 2 cut(s) 68, 726
NruI TCGCGA 1 cut(s) 156
PagI TCATGA 2 cut(s) 301, 309
PciSI GCTCTTC 2 cut(s) 402, 642
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 513, 628
PfeI GAWTC 3 cut(s) 39, 88, 677
PkrI GCNGC 4 cut(s) 8, 11, 63, 272
Ple19I CGATCG 1 cut(s) 336
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PsrI GAACNNNNNNTAC 2 cut(s) 408, 440
PstI CTGCAG 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 350
PvuI CGATCG 1 cut(s) 336
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 756
SalI GTCGAC 1 cut(s) 612
SapI GCTCTTC 2 cut(s) 402, 642
SatI GCNGC 4 cut(s) 7, 10, 62, 271
Sau3AI GATC 8 cut(s) 108, 235, 298, 333, 384, 565, 589, 637
SchI GAGTC 1 cut(s) 95
SfaNI GCATC 4 cut(s) 23, 309, 410, 721
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 756
Sse9I AATT 4 cut(s) 305, 429, 545, 628
SsiI CCGC 3 cut(s) 9, 185, 692
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 4 cut(s) 132, 336, 387, 613
TasI AATT 4 cut(s) 305, 429, 545, 628
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 3 cut(s) 39, 88, 677
TscAI CASTG 1 cut(s) 98
TseFI GTSAC 2 cut(s) 68, 726
TseI GCWGC 3 cut(s) 6, 61, 270
Tsp45I GTSAC 2 cut(s) 68, 726
TspDTI ATGAA 7 cut(s) 298, 318, 405, 465, 558, 677, 774
TspRI CASTG 1 cut(s) 98
XapI RAATTY 1 cut(s) 305
XmiI GTMKAC 2 cut(s) 613, 737
XmnI GAANNNNTTC 2 cut(s) 513, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.