Rorug01G0056000

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001405
Physical Location & Seq
Forward (+)
9222014 .. 9222391
378 bp
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UTR
Exon/CDS
Intron
Rorug01G0056000.1

Sequence Viewer

Length: 378 bp
ATGCAGTCTCTGAAAAAGTTGATATTCCTTAATTTAAGTCACTCTCAAAATCTTAAGAACACCCTTGACTTGACAGAGGCGACGAACCTGGAGAAACTAATTCTTGATGGTTGTCTAAGTTTATTTGAGATTCATCCATCCATTTCAGCTCTTACAAACCTTGTTTTCATGAGTCTAAAAGGGTGCCAAGAGCTTAAGAGCCTTCCATGCAGCATTTATATAAAATCTCTTAAAACCCTTGATCTTTCTGGATGCTCAAATCTTCAGAAGTTTCCAGAGATTTCGGGAACTATGGAGGACCTATCAGAGCTTTATTTAAATGAGACTGCAATTGAAGAACTACCTTTATCAATTGAACGGCTTCATGGGCTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

125

Amino Acids

13.94

Weight (kDa)

5.1

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 74 - 125 1.6e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 248
AflII CTTAAG 2 cut(s) 53, 194
AgsI TTSAA 2 cut(s) 335, 356
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 3 cut(s) 149, 193, 310
AluI AGCT 3 cut(s) 149, 193, 310
Alw26I GTCTC 2 cut(s) 12, 317
AlwNI CAGNNNCTG 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 298
AvaII GGWCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 222
BccI CCATC 2 cut(s) 101, 145
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 2 cut(s) 12, 317
BfrI CTTAAG 2 cut(s) 53, 194
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 89
BseGI GGATG 3 cut(s) 133, 137, 257
BseXI GCAGC 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 183
BsmAI GTCTC 2 cut(s) 12, 317
Bsp143I GATC 1 cut(s) 241
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 183
BspTI CTTAAG 2 cut(s) 53, 194
BssMI GATC 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 89
BstAFI CTTAAG 2 cut(s) 53, 194
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 3 cut(s) 133, 137, 257
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 12, 317
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 207, 367
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 222
BtsCI GGATG 3 cut(s) 133, 137, 257
CaiI CAGNNNCTG 1 cut(s) 10
CciI TCATGA 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 298
CviAII CATG 3 cut(s) 169, 207, 365
CviJI RGCY 6 cut(s) 149, 193, 201, 310, 361, 370
CviKI_1 RGCY 6 cut(s) 149, 193, 201, 310, 361, 370
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
DraI TTTAAA 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 172, 210, 368
FaiI YATR 6 cut(s) 170, 208, 219, 221, 293, 366
FatI CATG 3 cut(s) 168, 206, 364
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 3 cut(s) 120, 124, 264
Fsp4HI GCNGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 110
Hin1II CATG 3 cut(s) 172, 210, 368
HinfI GANTC 2 cut(s) 130, 172
Hpy188I TCNGA 4 cut(s) 12, 267, 307, 377
Hpy188III TCNNGA 5 cut(s) 104, 169, 249, 275, 285
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 212
HpyCH4V TGCA 3 cut(s) 4, 210, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 367
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 3 cut(s) 172, 210, 368
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 4 cut(s) 74, 101, 234, 288
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 2 cut(s) 254, 347
MfeI CAATTG 2 cut(s) 330, 351
MluCI AATT 4 cut(s) 31, 99, 330, 351
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 2 cut(s) 70, 289
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 6 cut(s) 30, 35, 54, 195, 231, 317
MspCI CTTAAG 2 cut(s) 53, 194
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 2 cut(s) 330, 351
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 207, 367
NdeII GATC 1 cut(s) 241
NlaIII CATG 3 cut(s) 172, 210, 368
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 38
PagI TCATGA 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 212
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 298
PspPPI RGGWCCY 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 10
SaqAI TTAA 6 cut(s) 30, 35, 54, 195, 231, 317
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 89
SetI ASST 7 cut(s) 90, 151, 162, 195, 303, 312, 346
SfaNI GCATC 1 cut(s) 242
SinI GGWCC 1 cut(s) 298
SmiI ATTTAAAT 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 53, 194
SmoI CTYRAG 2 cut(s) 53, 194
Sse9I AATT 4 cut(s) 31, 99, 330, 351
StyD4I CCNGG 1 cut(s) 87
SwaI ATTTAAAT 1 cut(s) 318
TasI AATT 4 cut(s) 31, 99, 330, 351
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 6 cut(s) 30, 35, 54, 195, 231, 317
Tru9I TTAA 6 cut(s) 30, 35, 54, 195, 231, 317
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 3 cut(s) 122, 157, 353
Vha464I CTTAAG 2 cut(s) 53, 194
VpaK11BI GGWCC 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.