Rh1CG071800

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001405
Physical Location & Seq
Forward (+)
14815950 .. 14816249
300 bp
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UTR
Exon/CDS
Intron
Rh1CG071800.1

Sequence Viewer

Length: 300 bp
ATGGAAGCTAAAAACCACGACCCGGATTTGCCCTATATCGACAATTTCATCACAGCTTACAGGATTCACAAAGCCGTGTCAGACAAGAAAAGCTGGTACGAGGTTCTCGGCATCCCCGAAACAGCCGACTCTCAAACCATTAAGAAACAATACAAGGAATTGGCACTAGTTGTGCACCCCGACAAGAACAGCTCTCTCGCCGCCGACGGTGCTTTCAGGCATGTCAAAACCGCCTTGGCTCTCCGACCCCCAACAAAAGGAGGATTACGACAAATCATTGAGTCGTCGTGGTTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

99

Amino Acids

11.26

Weight (kDa)

8.89

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 32 - 79 2.3e-14 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 201, 231
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 22, 257
AhlI ACTAGT 1 cut(s) 166
AluBI AGCT 4 cut(s) 8, 56, 93, 192
AluI AGCT 4 cut(s) 8, 56, 93, 192
Alw21I GWGCWC 1 cut(s) 177
Alw44I GTGCAC 1 cut(s) 173
ApaLI GTGCAC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BceAI ACGGC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 23
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 257
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 22, 257
BseSI GKGCMC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 22, 257
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 2 cut(s) 201, 231
BssECI CCNNGG 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 209
BstF5I GGATG 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 111
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 221
CviJI RGCY 7 cut(s) 8, 56, 74, 93, 125, 192, 239
CviKI_1 RGCY 7 cut(s) 8, 56, 74, 93, 125, 192, 239
CviQI GTAC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 224
FaiI YATR 2 cut(s) 36, 222
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 201
HapII CCGG 1 cut(s) 23
Hin1II CATG 1 cut(s) 224
HinfI GANTC 3 cut(s) 64, 128, 281
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 82, 245
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 2 cut(s) 209, 289
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 224
LpnPI CCDG 5 cut(s) 36, 46, 79, 202, 280
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 43, 158
MlyI GAGTC 2 cut(s) 122, 290
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 2 cut(s) 94, 254
MseI TTAA 1 cut(s) 141
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 1 cut(s) 23
NlaIII CATG 1 cut(s) 224
NmeAIII GCCGAG 1 cut(s) 87
NspI RCATGY 1 cut(s) 224
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 2 cut(s) 122, 289
PpsI GAGTC 2 cut(s) 122, 289
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 201
SchI GAGTC 2 cut(s) 122, 290
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 10, 58, 95, 105, 194
SfaNI GCATC 1 cut(s) 120
SpeI ACTAGT 1 cut(s) 166
Sse9I AATT 2 cut(s) 43, 158
SsiI CCGC 2 cut(s) 201, 231
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 39
TasI AATT 2 cut(s) 43, 158
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 37
VneI GTGCAC 1 cut(s) 173
XceI RCATGY 1 cut(s) 224
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.