Rh1CG072600

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001405
Physical Location & Seq
Forward (+)
14876570 .. 14876975
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG072600.1

Sequence Viewer

Length: 406 bp
ATGGCCAGCAAGTACTCCTTTCCTCATGATCCCCTCGTCAACCTCACCATAATGGCTGCTGTCAAGGCAAAAGACACTGCAGAAGAATTTTTCAAGCTTCAAAACTACGAGTTGGAGATCAAGCAGGCCATGGTAGCCAAACAATTCGACCCCGATTTGCAAGGTATCGATCATTTCATCCTTGCCTACCAAATTCATAAAGCGGTGTCGGAAAAGAAAGATTGGTATCATGTTCTTGGCTTCCAACAGGTTACTGAGTATGCGACCATCAAGAAACAATACAAAGAGTTGGCATGCTTTGTACACCCTGACAAGAATAGTTCTATTGCTGCCAAAGGAGCTTTCAACCATGTCAAAGTGGCATGGGATTTTCTTTCTGACCCTGCCAAAAAGAAGGCCTACGAAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

135

Amino Acids

15.53

Weight (kDa)

7.82

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 74 - 135 4e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 86, 192
AfaI GTAC 2 cut(s) 14, 303
AgsI TTSAA 3 cut(s) 94, 101, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 2 cut(s) 97, 341
AluI AGCT 2 cut(s) 97, 341
AlwI GGATC 1 cut(s) 23
AoxI GGCC 3 cut(s) 3, 126, 396
ApeKI GCWGC 2 cut(s) 56, 329
ApoI RAATTY 2 cut(s) 86, 192
AsuHPI GGTGA 1 cut(s) 37
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 43, 316
BccI CCATC 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 2 cut(s) 57, 330
BlsI GCNGC 2 cut(s) 58, 331
BmcAI AGTACT 1 cut(s) 14
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 225
BseMII CTCAG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 43, 316
BshFI GGCC 3 cut(s) 5, 128, 398
BshVI ATCGAT 1 cut(s) 168
BsnI GGCC 3 cut(s) 5, 128, 398
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 3 cut(s) 28, 117, 169
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 1 cut(s) 203
BspANI GGCC 3 cut(s) 5, 128, 398
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 168
BspHI TCATGA 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 28, 117, 169
BssT1I CCWWGG 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 301
BstC8I GCNNGC 3 cut(s) 7, 126, 295
BstDEI CTNAG 1 cut(s) 255
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 3 cut(s) 31, 120, 172
BstMBI GATC 3 cut(s) 28, 117, 169
BstMWI GCNNNNNNNGC 3 cut(s) 65, 134, 338
BstNSI RCATGY 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 43, 316
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 3 cut(s) 5, 128, 398
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 7, 126, 295
CciI TCATGA 1 cut(s) 25
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 2 cut(s) 13, 302
CviAII CATG 6 cut(s) 26, 130, 230, 294, 350, 363
CviJI RGCY 8 cut(s) 5, 56, 97, 128, 137, 240, 341, 398
CviKI_1 RGCY 8 cut(s) 5, 56, 97, 128, 137, 240, 341, 398
CviQI GTAC 2 cut(s) 13, 302
DdeI CTNAG 1 cut(s) 255
DpnI GATC 3 cut(s) 30, 119, 171
DpnII GATC 3 cut(s) 28, 117, 169
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 6 cut(s) 29, 133, 233, 297, 353, 366
FaiI YATR 9 cut(s) 27, 50, 131, 198, 231, 261, 295, 351, 364
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 6 cut(s) 25, 129, 229, 293, 349, 362
Fnu4HI GCNGC 2 cut(s) 57, 330
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 57, 330
GluI GCNGC 2 cut(s) 57, 330
HaeIII GGCC 3 cut(s) 5, 128, 398
Hin1II CATG 6 cut(s) 29, 133, 233, 297, 353, 366
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 95
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 40, 304
Hpy188I TCNGA 2 cut(s) 211, 379
Hpy188III TCNNGA 2 cut(s) 26, 271
Hpy8I GTNNAC 2 cut(s) 40, 304
HpyAV CCTTC 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 80, 160
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 134, 338
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 6 cut(s) 29, 133, 233, 297, 353, 366
Kzo9I GATC 3 cut(s) 28, 117, 169
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 5 cut(s) 19, 110, 233, 321, 396
Lsp1109I GCAGC 2 cut(s) 43, 316
MaeIII GTNAC 1 cut(s) 250
MalI GATC 3 cut(s) 30, 119, 171
MboI GATC 3 cut(s) 28, 117, 169
MboII GAAGA 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 86, 143, 192
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 93, 189, 268
MnlI CCTC 3 cut(s) 33, 44, 53
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 3 cut(s) 65, 134, 338
NcoI CCATGG 1 cut(s) 129
NdeII GATC 3 cut(s) 28, 117, 169
NlaIII CATG 6 cut(s) 29, 133, 233, 297, 353, 366
NspI RCATGY 1 cut(s) 297
PaeI GCATGC 1 cut(s) 297
PagI TCATGA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 398
PkrI GCNGC 2 cut(s) 58, 331
PstI CTGCAG 1 cut(s) 82
RsaI GTAC 2 cut(s) 14, 303
RsaNI GTAC 2 cut(s) 13, 302
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 2 cut(s) 57, 330
Sau3AI GATC 3 cut(s) 28, 117, 169
ScaI AGTACT 1 cut(s) 14
SetI ASST 5 cut(s) 45, 99, 166, 252, 343
SfcI CTRYAG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 50
SphI GCATGC 1 cut(s) 297
Sse9I AATT 3 cut(s) 86, 143, 192
SseBI AGGCCT 1 cut(s) 398
SsiI CCGC 1 cut(s) 203
StuI AGGCCT 1 cut(s) 398
StyI CCWWGG 1 cut(s) 129
TaqI TCGA 2 cut(s) 147, 168
TasI AATT 3 cut(s) 86, 143, 192
TatI WGTACW 2 cut(s) 12, 301
TscAI CASTG 1 cut(s) 82
TseI GCWGC 2 cut(s) 56, 329
TspDTI ATGAA 2 cut(s) 166, 185
TspRI CASTG 1 cut(s) 82
XapI RAATTY 2 cut(s) 86, 192
XceI RCATGY 1 cut(s) 297
ZrmI AGTACT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.