Rroxscaffold_4G00324350

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001405
Physical Location & Seq
Forward (+)
55764510 .. 55765106
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324350.1

Sequence Viewer

Length: 597 bp
ATGGCCAGCACTTACCCGTTTCCTCATGATCCCCTCGTTAACCTCGCCAAGATGGCTGCTGTGAAGGCACGAGATACTGCAGAAGCGTTTTTCAAGCTTCAATACTTCGAGTTGGCGATCAAGCAGGCTATGGTAGCCAAACAATTCGACCCGGATTTGCAAGACGTCGATCACTTCATCCTAGCATACCAGATTCATAAAGCAGTGTCAGAGAAGAAAGATTGGTATCATGTTCTTGGCTTCCAACAGGTTACTGACTATGTTACCATCAAGAAACAATACAAAGAATTGGCCCGCTGTGTGCACCCAGACAAGAATAGCTCTGCTGCTGCAGAAGGGGCTTTCAAGCATGTCAAAGCTGCATTGGACTTTCTCTCTGACTCTGCCAAAAAGAAGGCTTACGACAAGTTGTTAAGTACTGCGCGGTTTCAAGGGTCTAAGGTCAAGAACACTCGCAAGAGGGCTTGCCCACAGGCTAAGACCAGTACTACTGGAGATGATCGGGATGTTTTCAAGAAGACTATCAAGATAATGAGGAAAACGAACCCAGGTCAAAAGACATGTTGTATGAGGATATCTGTATGTAGGGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

198

Amino Acids

22.43

Weight (kDa)

9.67

Isoelectric Point (pI)

23.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 74 - 135 5.3e-17 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
AccII CGCG 1 cut(s) 424
AciI CCGC 2 cut(s) 295, 424
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 418, 487
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 5 cut(s) 94, 101, 346, 431, 514
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 3 cut(s) 97, 321, 359
AluI AGCT 3 cut(s) 97, 321, 359
Alw21I GWGCWC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 23
AoxI GGCC 2 cut(s) 3, 291
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 4 cut(s) 56, 326, 329, 359
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 43, 313, 316, 346
BccI CCATC 2 cut(s) 46, 275
BciT130I CCWGG 1 cut(s) 549
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 2 cut(s) 78, 330
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 4 cut(s) 57, 327, 330, 360
BlsI GCNGC 4 cut(s) 58, 328, 331, 361
BmcAI AGTACT 2 cut(s) 418, 487
Bme1390I CCNGG 2 cut(s) 152, 549
BmgT120I GGNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 152, 549
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 547
Bse1I ACTGG 2 cut(s) 483, 496
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 2 cut(s) 177, 511
BseJI GATNNNNATC 1 cut(s) 225
BseNI ACTGG 2 cut(s) 483, 496
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 4 cut(s) 43, 313, 316, 346
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 2 cut(s) 5, 293
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 152
BsnI GGCC 2 cut(s) 5, 293
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 4 cut(s) 28, 117, 169, 499
BspACI CCGC 2 cut(s) 295, 424
BspANI GGCC 2 cut(s) 5, 293
BspFNI CGCG 1 cut(s) 424
BspHI TCATGA 1 cut(s) 25
BspMAI CTGCAG 2 cut(s) 82, 334
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 2 cut(s) 483, 496
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 4 cut(s) 28, 117, 169, 499
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 549
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 4 cut(s) 7, 126, 295, 466
BstDEI CTNAG 2 cut(s) 438, 477
BstF5I GGATG 2 cut(s) 177, 511
BstFNI CGCG 1 cut(s) 424
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 4 cut(s) 31, 120, 172, 502
BstMBI GATC 4 cut(s) 28, 117, 169, 499
BstMWI GCNNNNNNNGC 4 cut(s) 53, 65, 134, 338
BstNI CCWGG 1 cut(s) 549
BstNSI RCATGY 2 cut(s) 353, 564
BstSCI CCNGG 2 cut(s) 150, 547
BstSFI CTRYAG 2 cut(s) 78, 330
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 4 cut(s) 43, 313, 316, 346
BstV2I GAAGAC 1 cut(s) 524
BsuRI GGCC 2 cut(s) 5, 293
BtsCI GGATG 2 cut(s) 177, 511
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 4 cut(s) 7, 126, 295, 466
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 417, 486
CviAII CATG 4 cut(s) 26, 230, 350, 561
CviQI GTAC 2 cut(s) 417, 486
DdeI CTNAG 2 cut(s) 438, 477
DpnI GATC 4 cut(s) 30, 119, 171, 501
DpnII GATC 4 cut(s) 28, 117, 169, 499
EaeI YGGCCR 1 cut(s) 3
Eco32I GATATC 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 547
EcoRV GATATC 1 cut(s) 576
FaeI CATG 4 cut(s) 29, 233, 353, 564
FatI CATG 4 cut(s) 25, 229, 349, 560
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 4 cut(s) 57, 327, 330, 360
FokI GGATG 2 cut(s) 164, 518
Fsp4HI GCNGC 4 cut(s) 57, 327, 330, 360
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 423
GluI GCNGC 4 cut(s) 57, 327, 330, 360
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 2 cut(s) 5, 293
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 4 cut(s) 29, 233, 353, 564
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 2 cut(s) 193, 380
HpaI GTTAAC 1 cut(s) 40
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 40, 304
Hpy188I TCNGA 2 cut(s) 211, 379
Hpy188III TCNNGA 6 cut(s) 26, 271, 445, 503, 514, 526
Hpy8I GTNNAC 2 cut(s) 40, 304
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 58, 329, 388
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 5 cut(s) 80, 160, 304, 332, 362
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 65, 134, 338
HpyF3I CTNAG 2 cut(s) 438, 477
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 4 cut(s) 29, 233, 353, 564
HspAI GCGC 1 cut(s) 422
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 4 cut(s) 28, 117, 169, 499
Lsp1109I GCAGC 4 cut(s) 43, 313, 316, 346
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 250, 262
MalI GATC 4 cut(s) 30, 119, 171, 501
MboI GATC 4 cut(s) 28, 117, 169, 499
MboII GAAGA 2 cut(s) 226, 529
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 143, 287
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 6 cut(s) 33, 44, 53, 453, 528, 564
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 39, 413
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 152, 549
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 4 cut(s) 53, 65, 134, 338
NciI CCSGG 1 cut(s) 152
NdeII GATC 4 cut(s) 28, 117, 169, 499
NlaIII CATG 4 cut(s) 29, 233, 353, 564
NspI RCATGY 2 cut(s) 353, 564
PagI TCATGA 1 cut(s) 25
PciI ACATGT 1 cut(s) 560
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 58, 328, 331, 361
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PscI ACATGT 1 cut(s) 560
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspPI GGNCC 1 cut(s) 292
PstI CTGCAG 2 cut(s) 82, 334
RsaI GTAC 2 cut(s) 418, 487
RsaNI GTAC 2 cut(s) 417, 486
SaqAI TTAA 2 cut(s) 39, 413
SatI GCNGC 4 cut(s) 57, 327, 330, 360
Sau3AI GATC 4 cut(s) 28, 117, 169, 499
Sau96I GGNCC 1 cut(s) 292
ScaI AGTACT 2 cut(s) 418, 487
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 152, 549
SduI GDGCHC 1 cut(s) 306
SetI ASST 8 cut(s) 45, 99, 168, 252, 323, 361, 444, 553
SfcI CTRYAG 2 cut(s) 78, 330
Sse9I AATT 2 cut(s) 143, 287
SsiI CCGC 2 cut(s) 295, 424
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 150, 547
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 108, 147, 168
TasI AATT 2 cut(s) 143, 287
TatI WGTACW 2 cut(s) 416, 485
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 39, 413
Tru9I TTAA 2 cut(s) 39, 413
TscAI CASTG 1 cut(s) 210
TseI GCWGC 4 cut(s) 56, 326, 329, 359
TspDTI ATGAA 2 cut(s) 166, 185
TspRI CASTG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 302
XceI RCATGY 2 cut(s) 353, 564
XspI CTAG 1 cut(s) 182
ZraI GACGTC 1 cut(s) 166
ZrmI AGTACT 2 cut(s) 418, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.