Rw1G005910

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001405
Physical Location & Seq
Forward (+)
11937197 .. 11937844
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005910.1

Sequence Viewer

Length: 648 bp
ATGGCTTCTGCAATCTCCAAGAATAAGAAAAACCACCAGGCTGCTGTTAAGGCACTAGACGATGCAGAGGCTTATTTCAAGCTCCAAAAGTTGGACTCTGCAATCAAAGAGGCTATGCAAGCGAAAAATCTCGACCCTAATTTGCCCAACGTCGACAATTTTATCACAGCATACAAGATTCATAGGGCCATGTCCTCCAAGAAAAACTGGTATGTGATTCTTGGCATCCCCGAATCTACGCATTTATTAACTATCAATAAAAGATATAAGGAATTGGCACTCGTGGTGCACCCTGATAAGAATGTCTCTGCTGCTGCTGAAGGTGCTTTCAAGCATGTTAAAGCTGCCTTGGACTTTCTCTCTGACCCGGTGAGAAAGAAGGATTACGACAGGTCTTTAATGTCGAAAAAGAAGACATACGCTGCTGCTGCGGCAAGGAAAGCCACCGATTATAAGAATGCCGCGGCTGCTGCTGCAAAGGAGGCTGAGGCTGCTGCTGCAAAGGAGGCTGAGGCTGCTGCTGCCAGGAGTGAGATTAATGCACGCAAACGACGTTCTAGTGCGCCCATGAGTGAACTCGAGTATGGCATAAATCTAATAATGAAATACTCGCCAAAATACATGGAGCCCAAGTTCTGTGTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

215

Amino Acids

23.82

Weight (kDa)

9.66

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 69 - 130 5.4e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 91
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 464
AciI CCGC 3 cut(s) 431, 462, 464
AcuI CTGAAG 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 79, 331
AjnI CCWGG 2 cut(s) 36, 524
AloI GAACNNNNNNTCC 1 cut(s) 617
AluBI AGCT 2 cut(s) 82, 344
AluI AGCT 2 cut(s) 82, 344
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 310
Alw44I GTGCAC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 1 cut(s) 186
ApaLI GTGCAC 1 cut(s) 287
AseI ATTAAT 1 cut(s) 537
AspLEI GCGC 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 630
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 291
BbvCI CCTCAGC 2 cut(s) 486, 510
BciT130I CCWGG 2 cut(s) 38, 526
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 2 cut(s) 56, 558
Bme1390I CCNGG 3 cut(s) 38, 368, 526
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 3 cut(s) 38, 368, 526
BmsI GCATC 2 cut(s) 52, 234
BpiI GAAGAC 1 cut(s) 419
Bpu10I CCTNAGC 2 cut(s) 486, 510
BpuMI CCSGG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 348, 462
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 2 cut(s) 38, 526
BseDI CCNNGG 2 cut(s) 348, 462
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 477, 501
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 291, 630
BspACI CCGC 3 cut(s) 431, 462, 464
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 2 cut(s) 478, 502
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 1 cut(s) 627
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 348, 462
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 38, 526
BstC8I GCNNGC 2 cut(s) 120, 544
BstDEI CTNAG 2 cut(s) 486, 510
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 464
BstHHI GCGC 1 cut(s) 565
BstMAI GTCTC 1 cut(s) 310
BstNI CCWGG 2 cut(s) 38, 526
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 3 cut(s) 36, 366, 524
BstSLI GKGCMC 1 cut(s) 291
BstUI CGCG 1 cut(s) 464
BstV2I GAAGAC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 120, 544
CfoI GCGC 1 cut(s) 565
Cfr13I GGNCC 1 cut(s) 186
Cfr42I CCGCGG 1 cut(s) 465
CviAII CATG 4 cut(s) 190, 335, 568, 622
DdeI CTNAG 2 cut(s) 486, 510
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 36, 524
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 4 cut(s) 193, 338, 571, 625
FatI CATG 4 cut(s) 189, 334, 567, 621
FblI GTMKAC 1 cut(s) 153
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 630
FspBI CTAG 2 cut(s) 56, 558
GlaI GCGC 1 cut(s) 564
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 368
HhaI GCGC 1 cut(s) 565
Hin1II CATG 4 cut(s) 193, 338, 571, 625
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 4 cut(s) 95, 178, 217, 233
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 154, 289, 575
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 3 cut(s) 154, 289, 575
Hpy99I CGWCG 2 cut(s) 155, 555
HpyAV CCTTC 2 cut(s) 314, 373
HpyCH4IV ACGT 2 cut(s) 150, 553
HpyCH4V TGCA 8 cut(s) 11, 65, 101, 118, 289, 476, 500, 542
HpyF3I CTNAG 2 cut(s) 486, 510
HpySE526I ACGT 2 cut(s) 150, 553
Hsp92II CATG 4 cut(s) 193, 338, 571, 625
HspAI GCGC 1 cut(s) 563
KspI CCGCGG 1 cut(s) 465
LmnI GCTCC 2 cut(s) 87, 625
LpnPI CCDG 9 cut(s) 23, 50, 193, 306, 376, 381, 511, 538, 628
LweI GCATC 2 cut(s) 52, 234
MaeI CTAG 2 cut(s) 56, 558
MaeII ACGT 2 cut(s) 150, 553
MboII GAAGA 1 cut(s) 424
MhlI GDGCHC 2 cut(s) 291, 630
MluCI AATT 3 cut(s) 139, 157, 272
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 7 cut(s) 61, 103, 205, 475, 481, 499, 505
MseI TTAA 5 cut(s) 48, 248, 339, 398, 537
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 3 cut(s) 38, 368, 526
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 38, 526
MvnI CGCG 1 cut(s) 464
NciI CCSGG 1 cut(s) 368
NlaIII CATG 4 cut(s) 193, 338, 571, 625
NlaIV GGNNCC 1 cut(s) 627
NspI RCATGY 1 cut(s) 338
PaeR7I CTCGAG 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 550
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 3 cut(s) 178, 217, 233
PflMI CCANNNNNTGG 1 cut(s) 91
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PshBI ATTAAT 1 cut(s) 537
PsiI TTATAA 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 36, 524
PspGI CCWGG 2 cut(s) 36, 524
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 1 cut(s) 186
PspXI VCTCGAGB 1 cut(s) 578
SacII CCGCGG 1 cut(s) 465
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 5 cut(s) 48, 248, 339, 398, 537
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 38, 368, 526
SduI GDGCHC 2 cut(s) 291, 630
SetI ASST 6 cut(s) 84, 153, 325, 346, 395, 556
SfaNI GCATC 2 cut(s) 52, 234
Sfr274I CTCGAG 1 cut(s) 578
Sfr303I CCGCGG 1 cut(s) 465
SgrBI CCGCGG 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
Sse9I AATT 3 cut(s) 139, 157, 272
SsiI CCGC 3 cut(s) 431, 462, 464
SspMI CTAG 2 cut(s) 56, 558
StyD4I CCNGG 3 cut(s) 36, 366, 524
StyI CCWWGG 1 cut(s) 348
TaiI ACGT 2 cut(s) 153, 556
TaqI TCGA 4 cut(s) 132, 153, 404, 579
TasI AATT 3 cut(s) 139, 157, 272
TauI GCSGC 3 cut(s) 434, 464, 467
TfiI GAWTC 3 cut(s) 178, 217, 233
Tru1I TTAA 5 cut(s) 48, 248, 339, 398, 537
Tru9I TTAA 5 cut(s) 48, 248, 339, 398, 537
TspDTI ATGAA 2 cut(s) 170, 617
Van91I CCANNNNNTGG 1 cut(s) 91
VneI GTGCAC 1 cut(s) 287
VspI ATTAAT 1 cut(s) 537
XceI RCATGY 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 2 cut(s) 56, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.