Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015118.1

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Reverse (-)

359 .. 957

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015118.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggccagcaagtactcctttcctcatgatcccctcgtcaacctcaccataatggctgctgtcaaggcaaaagacactgcaaaagaatttttcaagcttcaaaactacgagttggagatcaagcaggccatggtagccaaacaattcgacccgatttgcaaggttactaagtattcgaccatcaagaaacaatacaaagagttggcatgctttgtacactctgacaagaatagctctattgctgccgaaggcgctttcaaccatgtcaaagtggcatgggattttctttctgaccctgccaaaaagaaggcctacgacaagtcgttaagtacatcgcgatttcaaaaggcgtcctatgtcaagaacacttgcgaaaggacttgccctcgggctaagaccagtactgaagatgatcgtggtttctgtaagagaacagtaaacagaataaggaaaacgaatactgaccaaaacacgagtactactctgatgttgtcagtacgtcgtgttgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

170

Amino Acids

19.38

Weight (kDa)

9.71

Isoelectric Point (pI)

24.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	337
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	426
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	6 cut(s)	14, 216, 331, 403, 478, 498
AgsI	TTSAA	4 cut(s)	94, 101, 259, 344
AluBI	AGCT	2 cut(s)	97, 234
AluI	AGCT	2 cut(s)	97, 234
AlwI	GGATC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	387
AoxI	GGCC	3 cut(s)	3, 126, 309
ApeKI	GCWGC	2 cut(s)	56, 242
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	43, 229
BccI	CCATC	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	255
BisI	GCNGC	2 cut(s)	57, 243
BlsI	GCNGC	2 cut(s)	58, 244
BmcAI	AGTACT	3 cut(s)	14, 403, 478
BmeT110I	CYCGRG	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	129, 386
Bse1I	ACTGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	129, 386
BseNI	ACTGG	1 cut(s)	399
BseXI	GCAGC	2 cut(s)	43, 229
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	3 cut(s)	5, 128, 311
BsiHKCI	CYCGRG	1 cut(s)	387
BsnI	GGCC	3 cut(s)	5, 128, 311
BsoBI	CYCGRG	1 cut(s)	387
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	28, 117, 412
Bsp19I	CCATGG	1 cut(s)	129
Bsp68I	TCGCGA	1 cut(s)	337
BspANI	GGCC	3 cut(s)	5, 128, 311
BspFNI	CGCG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	25
BspPI	GGATC	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	129, 386
BssMI	GATC	3 cut(s)	28, 117, 412
BssNI	GRCGYC	1 cut(s)	350
BssSI	CACGAG	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	436
BstACI	GRCGYC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	7, 126, 208
BstDEI	CTNAG	3 cut(s)	168, 393, 510
BstDSI	CCRYGG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	31, 120, 415
BstMBI	GATC	3 cut(s)	28, 117, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 134, 251
BstNSI	RCATGY	1 cut(s)	210
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	43, 229
BsuRI	GGCC	3 cut(s)	5, 128, 311
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
BtuMI	TCGCGA	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	7, 126, 208
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	254
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	6 cut(s)	13, 215, 330, 402, 477, 497
CviAII	CATG	5 cut(s)	26, 130, 207, 263, 276
CviJI	RGCY	8 cut(s)	5, 56, 97, 128, 137, 234, 311, 392
CviKI_1	RGCY	8 cut(s)	5, 56, 97, 128, 137, 234, 311, 392
CviQI	GTAC	6 cut(s)	13, 215, 330, 402, 477, 497
DdeI	CTNAG	3 cut(s)	168, 393, 510
DpnI	GATC	3 cut(s)	30, 119, 414
DpnII	GATC	3 cut(s)	28, 117, 412
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	5 cut(s)	29, 133, 210, 266, 279
FaiI	YATR	7 cut(s)	27, 50, 131, 208, 264, 277, 357
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	5 cut(s)	25, 129, 206, 262, 275
Fnu4HI	GCNGC	2 cut(s)	57, 243
Fsp4HI	GCNGC	2 cut(s)	57, 243
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	2 cut(s)	57, 243
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	5, 128, 311
HgaI	GACGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	29, 133, 210, 266, 279
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	95
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	40, 217, 439
Hpy188I	TCNGA	3 cut(s)	223, 292, 486
Hpy188III	TCNNGA	4 cut(s)	26, 184, 336, 361
Hpy8I	GTNNAC	3 cut(s)	40, 217, 439
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	2 cut(s)	242, 301
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	2 cut(s)	80, 159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 134, 251
HpyF3I	CTNAG	3 cut(s)	168, 393, 510
HpySE526I	ACGT	1 cut(s)	499
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	5 cut(s)	29, 133, 210, 266, 279
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	28, 117, 412
LpnPI	CCDG	4 cut(s)	19, 110, 309, 412
Lsp1109I	GCAGC	2 cut(s)	43, 229
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	3 cut(s)	30, 119, 414
MboI	GATC	3 cut(s)	28, 117, 412
MboII	GAAGA	1 cut(s)	419
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	86, 143
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	4 cut(s)	33, 44, 53, 396
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	65, 134, 251
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	28, 117, 412
NlaIII	CATG	5 cut(s)	29, 133, 210, 266, 279
NruI	TCGCGA	1 cut(s)	337
NspI	RCATGY	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	210
PagI	TCATGA	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	58, 244
RruI	TCGCGA	1 cut(s)	337
RsaI	GTAC	6 cut(s)	14, 216, 331, 403, 478, 498
RsaNI	GTAC	6 cut(s)	13, 215, 330, 402, 477, 497
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	57, 243
Sau3AI	GATC	3 cut(s)	28, 117, 412
ScaI	AGTACT	3 cut(s)	14, 403, 478
SetI	ASST	5 cut(s)	45, 99, 165, 236, 502
SmiMI	CAYNNNNRTG	1 cut(s)	50
SphI	GCATGC	1 cut(s)	210
Sse9I	AATT	2 cut(s)	86, 143
SseBI	AGGCCT	1 cut(s)	311
StuI	AGGCCT	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	2 cut(s)	147, 176
TasI	AATT	2 cut(s)	86, 143
TatI	WGTACW	5 cut(s)	12, 214, 329, 401, 476
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	56, 242
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	210
ZrmI	AGTACT	3 cut(s)	14, 403, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.