Rh1BG059300

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001405
Physical Location & Seq
Forward (+)
8727606 .. 8728453
848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG059300.1

Sequence Viewer

Length: 648 bp
ATGGCCTCTACATCGTCCCAGAATAATCAAGAGGCTGCTACCAAGGGACGAGACGCAGCAGAAGCCTATTTCAAGCTCGGAAACTTGGGCTCTGCAATCAATGAGGCCATGGAAGCTAAAAACCACGACCCGGATTTGCCCTATATCGACAATTTCATCACAGCTTACAGGATTCACAAAGCCGTGTCAGACAAGAAAAGCTGGTACGAGGTTCTCGGCATCCCCGAAACAGCCGACTCTCAAACCATTAAGAAACAATACAAGGAATTGGCACTAGTTGTGCACCCCGACAAGAACAGCTCTCTCGCCGCCGACGGTGCTTTCAGGCATGTCAAAACCGCCTTGGACATTCTCTCCGACCCCCAACAAAAGGAGGATTACGACAAATCATTGAGTCGTCGTGGTTCTGGTAAGTCTTTTTCCGACAGGAATCGTACACAGTTTCATAGGTTTAATGATGAGGATCATGGTTATGTTCAGAAAGCTGGGTGCAAGAACAAACGGGATAGGACAGATTGGAAGACTAGGGGCAAAGCCAAAAGGGCCATGACTGGTAGAGTGAGAGATTGGGATTATTTCATAATAAGAAGACCACCGAATGCCCATGAGCCAAAAATATTACCAAATATCGCCAATTTTGTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

215

Amino Acids

24.51

Weight (kDa)

9.52

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 68 - 128 2e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 309, 339
AclWI GGATC 1 cut(s) 471
AfaI GTAC 2 cut(s) 206, 436
AfiI CCNNNNNNNGG 2 cut(s) 130, 370
AgsI TTSAA 1 cut(s) 73
AhlI ACTAGT 1 cut(s) 274
AluBI AGCT 6 cut(s) 76, 116, 164, 201, 300, 485
AluI AGCT 6 cut(s) 76, 116, 164, 201, 300, 485
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 45
Alw44I GTGCAC 1 cut(s) 281
AlwI GGATC 1 cut(s) 471
AoxI GGCC 3 cut(s) 3, 105, 543
ApaLI GTGCAC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 35, 56
AspS9I GGNCC 1 cut(s) 543
AsuC2I CCSGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 285
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 2 cut(s) 527, 595
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 22, 68
BceAI ACGGC 1 cut(s) 167
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 45
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 2 cut(s) 275, 525
BglI GCCNNNNNGGC 1 cut(s) 542
BisI GCNGC 3 cut(s) 36, 57, 309
BlsI GCNGC 3 cut(s) 37, 58, 310
Bme1390I CCNGG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 543
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 527, 595
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 462
BsaJI CCNNGG 3 cut(s) 42, 108, 342
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 370
Bse1I ACTGG 1 cut(s) 556
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 3 cut(s) 42, 108, 342
BseGI GGATG 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 130, 370
BseNI ACTGG 1 cut(s) 556
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 2 cut(s) 22, 68
BseYI CCCAGC 1 cut(s) 485
BshFI GGCC 3 cut(s) 5, 107, 545
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 130, 370
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 3 cut(s) 5, 107, 545
Bsp1286I GDGCHC 2 cut(s) 92, 285
Bsp143I GATC 1 cut(s) 463
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 309, 339
BspANI GGCC 3 cut(s) 5, 107, 545
BspPI GGATC 1 cut(s) 471
BsrI ACTGG 1 cut(s) 556
BssECI CCNNGG 3 cut(s) 42, 108, 342
BssMI GATC 1 cut(s) 463
BssT1I CCWWGG 3 cut(s) 42, 108, 342
Bst4CI ACNGT 2 cut(s) 317, 441
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 4 cut(s) 62, 113, 317, 542
BstNSI RCATGY 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 22, 68
BstV2I GAAGAC 2 cut(s) 527, 595
BsuRI GGCC 3 cut(s) 5, 107, 545
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 543
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 205, 435
CviAII CATG 5 cut(s) 109, 329, 467, 547, 605
CviQI GTAC 2 cut(s) 205, 435
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
Eco130I CCWWGG 3 cut(s) 42, 108, 342
Eco24I GRGCYC 1 cut(s) 92
EcoT14I CCWWGG 3 cut(s) 42, 108, 342
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 3 cut(s) 42, 108, 342
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 5 cut(s) 112, 332, 470, 550, 608
FaiI YATR 9 cut(s) 110, 144, 330, 447, 468, 474, 548, 581, 606
FaqI GGGAC 1 cut(s) 60
FatI CATG 5 cut(s) 108, 328, 466, 546, 604
Fnu4HI GCNGC 3 cut(s) 36, 57, 309
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 3 cut(s) 36, 57, 309
FspBI CTAG 2 cut(s) 275, 525
GluI GCNGC 3 cut(s) 36, 57, 309
GsaI CCCAGC 1 cut(s) 489
HaeIII GGCC 3 cut(s) 5, 107, 545
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 62
Hin1II CATG 5 cut(s) 112, 332, 470, 550, 608
HinfI GANTC 4 cut(s) 172, 236, 394, 430
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 283, 437
Hpy188I TCNGA 5 cut(s) 80, 190, 358, 424, 480
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 2 cut(s) 283, 437
Hpy99I CGWCG 2 cut(s) 317, 402
HpyCH4III ACNGT 2 cut(s) 317, 441
HpyCH4V TGCA 3 cut(s) 95, 283, 492
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 113, 317, 542
Hsp92II CATG 5 cut(s) 112, 332, 470, 550, 608
Kzo9I GATC 1 cut(s) 463
LpnPI CCDG 9 cut(s) 32, 144, 154, 187, 310, 393, 412, 471, 537
Lsp1109I GCAGC 2 cut(s) 22, 68
LweI GCATC 1 cut(s) 228
MaeI CTAG 2 cut(s) 275, 525
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 2 cut(s) 532, 600
MhlI GDGCHC 2 cut(s) 92, 285
MluCI AATT 3 cut(s) 151, 266, 634
MlyI GAGTC 2 cut(s) 230, 403
MmeI TCCRAC 2 cut(s) 381, 447
MnlI CCTC 6 cut(s) 16, 25, 97, 202, 367, 454
MseI TTAA 2 cut(s) 249, 453
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 604
MwoI GCNNNNNNNGC 4 cut(s) 62, 113, 317, 542
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 108
NdeII GATC 1 cut(s) 463
NlaIII CATG 5 cut(s) 112, 332, 470, 550, 608
NmeAIII GCCGAG 1 cut(s) 195
NspI RCATGY 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 172, 430
PkrI GCNGC 3 cut(s) 37, 58, 310
PleI GAGTC 2 cut(s) 230, 402
PpsI GAGTC 2 cut(s) 230, 402
PspFI CCCAGC 1 cut(s) 485
PspPI GGNCC 1 cut(s) 543
RsaI GTAC 2 cut(s) 206, 436
RsaNI GTAC 2 cut(s) 205, 435
RseI CAYNNNNRTG 1 cut(s) 471
SaqAI TTAA 2 cut(s) 249, 453
SatI GCNGC 3 cut(s) 36, 57, 309
Sau3AI GATC 1 cut(s) 463
Sau96I GGNCC 1 cut(s) 543
SchI GAGTC 2 cut(s) 230, 403
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 92, 285
SetI ASST 8 cut(s) 78, 118, 166, 203, 213, 302, 452, 487
SfaNI GCATC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 471
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 3 cut(s) 151, 266, 634
SsiI CCGC 2 cut(s) 309, 339
SspI AATATT 1 cut(s) 618
SspMI CTAG 2 cut(s) 275, 525
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 3 cut(s) 42, 108, 342
TaaI ACNGT 2 cut(s) 317, 441
TaqI TCGA 1 cut(s) 147
TasI AATT 3 cut(s) 151, 266, 634
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 2 cut(s) 172, 430
Tru1I TTAA 2 cut(s) 249, 453
Tru9I TTAA 2 cut(s) 249, 453
TseI GCWGC 2 cut(s) 35, 56
TspDTI ATGAA 3 cut(s) 145, 434, 568
VneI GTGCAC 1 cut(s) 281
XceI RCATGY 1 cut(s) 332
XspI CTAG 2 cut(s) 275, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.