FvH4_7g03920

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001405
Physical Location & Seq
Forward (+)
4462860 .. 4463456
597 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03920.t1

Sequence Viewer

Length: 597 bp
ATGGCCAGCAGCACTTGCTCGTTTCCTCATGATCCTCTCGCCAACCTGGCCAAGTTGGCTGCTGTGAAGGCACGAAATACCGCAGAAGAGTTCTTTAAGCTTCAATACTTCGAGTTGGCGATCATGCAGGCCATGGTGGCCAAAGAATTCGACCCTGATTTGCAAGGTGTGGATCACTTCATCCTAGCGTACCAGATCCATAAAGCCGTGGCAGAGAAGAAAGATCGGTACCATGTTCTTGGCTTCCAACAGGTTACTGACTACGTAACCATCAAGAAACAATACAAGGAATTGGCTCGCTTCGTGCACCCAGACAAGAATAGCTCTGTTGCTGCAGAAGGGACTTTCAAGCATGTCAAAGCGGCATGGGACTTCCTCTCTGACCCTGCCAAAAAGAAGGCTTACGACAAGTCGTTAAGGAGTACTCCGCAGTTTCAAGGGTCGAATGTCAAGAACACTCGCAAGAGGGCTTGCCCTAAGGGGAAGACCGCTACTGCTGGAGATGGTCTTTTCAAGAAGACTATCAAGATAACGAGGACAACAGCTGCAGGCCAAAATACTTGTTGTATGAGGATATCTGTATGTAGGGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

199

Amino Acids

22.14

Weight (kDa)

9.69

Isoelectric Point (pI)

23.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 76 - 136 4.5e-17 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 228
AciI CCGC 4 cut(s) 81, 362, 428, 489
AclWI GGATC 3 cut(s) 26, 180, 190
AcoI YGGCCR 3 cut(s) 3, 48, 138
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 3 cut(s) 191, 230, 424
AgsI TTSAA 4 cut(s) 104, 349, 437, 514
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 3 cut(s) 100, 324, 545
AluI AGCT 3 cut(s) 100, 324, 545
Alw21I GWGCWC 1 cut(s) 309
Alw44I GTGCAC 1 cut(s) 305
AlwI GGATC 3 cut(s) 26, 180, 190
AoxI GGCC 5 cut(s) 3, 48, 129, 138, 550
ApaLI GTGCAC 1 cut(s) 305
ApeKI GCWGC 4 cut(s) 9, 59, 332, 545
ApoI RAATTY 1 cut(s) 146
Asp718I GGTACC 1 cut(s) 228
AxyI CCTNAGG 1 cut(s) 477
BaeGI GKGCMC 1 cut(s) 309
BalI TGGCCA 3 cut(s) 5, 50, 140
BanI GGYRCC 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 491, 524
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 4 cut(s) 21, 46, 319, 532
BccI CCATC 2 cut(s) 278, 497
BceAI ACGGC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 47
BfaI CTAG 1 cut(s) 185
BfmI CTRYAG 2 cut(s) 333, 546
BglI GCCNNNNNGGC 3 cut(s) 47, 56, 137
BisI GCNGC 5 cut(s) 10, 60, 333, 363, 546
BlsI GCNGC 5 cut(s) 11, 61, 334, 364, 547
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 47
BpiI GAAGAC 2 cut(s) 491, 524
BpmI CTGGAG 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 132, 207
Bse21I CCTNAGG 1 cut(s) 477
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 132, 207
BseGI GGATG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 4 cut(s) 21, 46, 319, 532
BshFI GGCC 5 cut(s) 5, 50, 131, 140, 552
BshNI GGYRCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 309
BslFI GGGAC 2 cut(s) 355, 383
BsmFI GGGAC 2 cut(s) 355, 383
BsnI GGCC 5 cut(s) 5, 50, 131, 140, 552
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 5 cut(s) 31, 120, 172, 195, 223
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 4 cut(s) 81, 362, 428, 489
BspANI GGCC 5 cut(s) 5, 50, 131, 140, 552
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 2 cut(s) 337, 550
BspPI GGATC 3 cut(s) 26, 180, 190
BspT107I GGYRCC 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 132, 207
BssMI GATC 5 cut(s) 31, 120, 172, 195, 223
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 265
BstC8I GCNNGC 5 cut(s) 7, 129, 298, 472, 550
BstDEI CTNAG 1 cut(s) 477
BstDSI CCRYGG 2 cut(s) 132, 207
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 5 cut(s) 34, 123, 175, 198, 226
BstMBI GATC 5 cut(s) 31, 120, 172, 195, 223
BstMWI GCNNNNNNNGC 5 cut(s) 15, 47, 56, 68, 137
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 2 cut(s) 333, 546
BstSLI GKGCMC 1 cut(s) 309
BstSNI TACGTA 1 cut(s) 265
BstV1I GCAGC 4 cut(s) 21, 46, 319, 532
BstV2I GAAGAC 2 cut(s) 491, 524
BstX2I RGATCY 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 239
BstYI RGATCY 1 cut(s) 195
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 5 cut(s) 5, 50, 131, 140, 552
BtgI CCRYGG 2 cut(s) 132, 207
BtsCI GGATG 1 cut(s) 180
Cac8I GCNNGC 5 cut(s) 7, 129, 298, 472, 550
CciI TCATGA 1 cut(s) 28
Csp6I GTAC 3 cut(s) 190, 229, 423
CviAII CATG 6 cut(s) 29, 124, 133, 233, 353, 366
CviQI GTAC 3 cut(s) 190, 229, 423
DdeI CTNAG 1 cut(s) 477
DpnI GATC 5 cut(s) 33, 122, 174, 197, 225
DpnII GATC 5 cut(s) 31, 120, 172, 195, 223
EaeI YGGCCR 3 cut(s) 3, 48, 138
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco105I TACGTA 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 132
Eco32I GATATC 1 cut(s) 576
Eco81I CCTNAGG 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 576
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 6 cut(s) 32, 127, 136, 236, 356, 369
FaiI YATR 9 cut(s) 30, 125, 134, 201, 234, 354, 367, 569, 583
FaqI GGGAC 2 cut(s) 355, 383
FatI CATG 6 cut(s) 28, 123, 132, 232, 352, 365
Fnu4HI GCNGC 5 cut(s) 10, 60, 333, 363, 546
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 5 cut(s) 10, 60, 333, 363, 546
FspBI CTAG 1 cut(s) 185
GluI GCNGC 5 cut(s) 10, 60, 333, 363, 546
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 5 cut(s) 5, 50, 131, 140, 552
Hin1II CATG 6 cut(s) 32, 127, 136, 236, 356, 369
HindIII AAGCTT 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 5 cut(s) 29, 274, 451, 514, 526
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 3 cut(s) 61, 332, 391
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 127, 163, 307, 335, 548
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 47, 56, 68, 137
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 6 cut(s) 32, 127, 136, 236, 356, 369
KpnI GGTACC 1 cut(s) 232
Kzo9I GATC 5 cut(s) 31, 120, 172, 195, 223
Lsp1109I GCAGC 4 cut(s) 21, 46, 319, 532
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 253, 265
MalI GATC 5 cut(s) 33, 122, 174, 197, 225
MboI GATC 5 cut(s) 31, 120, 172, 195, 223
MboII GAAGA 4 cut(s) 98, 229, 496, 529
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 309
MlsI TGGCCA 3 cut(s) 5, 50, 140
MluCI AATT 2 cut(s) 146, 290
MluNI TGGCCA 3 cut(s) 5, 50, 140
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 6 cut(s) 36, 45, 386, 459, 528, 564
Mox20I TGGCCA 3 cut(s) 5, 50, 140
MscI TGGCCA 3 cut(s) 5, 50, 140
MseI TTAA 3 cut(s) 96, 416, 595
Msp20I TGGCCA 3 cut(s) 5, 50, 140
MspA1I CMGCKG 1 cut(s) 545
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 5 cut(s) 15, 47, 56, 68, 137
NcoI CCATGG 1 cut(s) 132
NdeII GATC 5 cut(s) 31, 120, 172, 195, 223
NlaIII CATG 6 cut(s) 32, 127, 136, 236, 356, 369
NlaIV GGNNCC 1 cut(s) 230
NspI RCATGY 1 cut(s) 356
PagI TCATGA 1 cut(s) 28
PkrI GCNGC 5 cut(s) 11, 61, 334, 364, 547
Ppu21I YACGTR 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 230
PstI CTGCAG 2 cut(s) 337, 550
PsuI RGATCY 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 3 cut(s) 191, 230, 424
RsaNI GTAC 3 cut(s) 190, 229, 423
SaqAI TTAA 3 cut(s) 96, 416, 595
SatI GCNGC 5 cut(s) 10, 60, 333, 363, 546
Sau3AI GATC 5 cut(s) 31, 120, 172, 195, 223
ScaI AGTACT 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 309
SetI ASST 7 cut(s) 48, 102, 169, 255, 267, 326, 547
SfcI CTRYAG 2 cut(s) 333, 546
SfiI GGCCNNNNNGGCC 1 cut(s) 137
SnaBI TACGTA 1 cut(s) 265
Sse9I AATT 2 cut(s) 146, 290
SsiI CCGC 4 cut(s) 81, 362, 428, 489
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 132
TaiI ACGT 1 cut(s) 267
TaqI TCGA 3 cut(s) 111, 150, 443
TasI AATT 2 cut(s) 146, 290
TatI WGTACW 1 cut(s) 422
TauI GCSGC 1 cut(s) 365
Tru1I TTAA 3 cut(s) 96, 416, 595
Tru9I TTAA 3 cut(s) 96, 416, 595
TseI GCWGC 4 cut(s) 9, 59, 332, 545
TspDTI ATGAA 1 cut(s) 169
VneI GTGCAC 1 cut(s) 305
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 356
XspI CTAG 1 cut(s) 185
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.