Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

568805 .. 571616

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00530.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCTACGGCTATATTCTCGCGCGTATCGTAGAACCTTGAGCTCAATCAACCATCCACCTCCTCCCAGCCTCAACCTGCAAACCATTCTCGGCCAAGTAGGAGCCCTCGCCACGCGCGGCCAACTCAACGAGGCACTCACACTCTTCTACACTCTCCAACCGCCACCCTCTCTCATCCGCTGCAACCAAACCTACGCCACTCTCTTCCACGCATGTGCTCGCCACAACTCTCTCCGACAAGGCCTCTCTCTTCACCACTACATGCTTGCCCACAACCCGACCACCCCTCCCGACCTCTTCGTCTCCAACCACCTCATCAACATTTACTCCAAATTCGGCTGCTTAGACCACGCCCGCCACCTGTTCGATGAAATGCCTACAAGAAACCTCGTCACCTGGACCGCTCTCATTTCCGGCTTCGCACAGCGTGGCCTTGCTGACAATTGTTTTCGTTTATTCGCTGCCATGTTGCCGCATCACCTCCCGAACGAGTTCACATTTGCCAGCGTGCTCAGTTCGTGCGCCGCCGCCGAAACTGTTCGTGGGCGGCAGGTGCACGCCCTCGCGTTGAAAATGTCTTTAGATGCTTGTACTTACGTTGCCAATGCTCTCATTACCATGTACTGCAAGGGAGGTGTGTGTGATGTTAGTCGAGACGATGATGCATGGAAGGTATTTACAACCATGGAATCGCGGAATCTTATATCCTGGAATTCCATGATTGCAGGGTTTCAGTGTCTTTGGATGGTGTGGAGCCTTCTAAAGCTCCTCCATATCTCCAAGCGGCCAAGTCTCGGCTCGGACAAGCTACCCCGTACGAGATGGCAGTTTTCGATTCTGTCAATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

284

Amino Acids

31.9

Weight (kDa)

9.45

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	129 - 175	1.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	541
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc36I	ACCTGC	2 cut(s)	84, 541
AccBSI	CCGCTC	1 cut(s)	404
AccII	CGCG	6 cut(s)	21, 23, 115, 117, 566, 694
AcoI	YGGCCR	3 cut(s)	91, 118, 785
AcsI	RAATTY	2 cut(s)	332, 712
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	3 cut(s)	592, 623, 817
AfiI	CCNNNNNNNGG	1 cut(s)	794
AgsI	TTSAA	1 cut(s)	571
AjnI	CCWGG	2 cut(s)	395, 707
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	42, 766, 808
AluI	AGCT	3 cut(s)	42, 766, 808
Alw21I	GWGCWC	4 cut(s)	44, 220, 513, 558
Alw26I	GTCTC	3 cut(s)	307, 648, 797
Alw44I	GTGCAC	1 cut(s)	554
AoxI	GGCC	5 cut(s)	91, 118, 241, 430, 785
ApaLI	GTGCAC	1 cut(s)	554
ApeKI	GCWGC	3 cut(s)	180, 339, 461
ApoI	RAATTY	2 cut(s)	332, 712
Asp700I	GAANNNNTTC	2 cut(s)	491, 537
AspLEI	GCGC	3 cut(s)	23, 117, 524
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	3 cut(s)	245, 385, 470
AvaII	GGWCC	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	558
BanII	GRGCYC	2 cut(s)	44, 106
Bbv12I	GWGCWC	4 cut(s)	44, 220, 513, 558
BbvI	GCAGC	3 cut(s)	167, 326, 448
BccI	CCATC	3 cut(s)	60, 739, 816
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	397, 709
BcoDI	GTCTC	3 cut(s)	307, 648, 797
BfuAI	ACCTGC	2 cut(s)	84, 541
BisI	GCNGC	9 cut(s)	118, 181, 340, 462, 473, 525, 528, 548, 785
BlsI	GCNGC	9 cut(s)	119, 182, 341, 463, 474, 526, 529, 549, 786
Bme1390I	CCNGG	2 cut(s)	397, 709
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	103, 755
BmrFI	CCNGG	2 cut(s)	397, 709
BmsI	GCATC	3 cut(s)	484, 574, 652
BpuEI	CTTGAG	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	684
BsaXI	ACNNNNNCTCC	4 cut(s)	271, 301, 311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
BseBI	CCWGG	2 cut(s)	397, 709
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	3 cut(s)	52, 174, 750
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMII	CTCAG	1 cut(s)	526
BseRI	GAGGAG	2 cut(s)	51, 758
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	3 cut(s)	167, 326, 448
BseYI	CCCAGC	1 cut(s)	65
Bsh1236I	CGCG	6 cut(s)	21, 23, 115, 117, 566, 694
BshFI	GGCC	5 cut(s)	93, 120, 243, 432, 787
BsiHKAI	GWGCWC	4 cut(s)	44, 220, 513, 558
BsiSI	CCGG	1 cut(s)	414
BsiWI	CGTACG	1 cut(s)	815
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	3 cut(s)	307, 648, 797
BsmBI	CGTCTC	2 cut(s)	307, 648
BsnI	GGCC	5 cut(s)	93, 120, 243, 432, 787
Bsp1286I	GDGCHC	5 cut(s)	44, 106, 220, 513, 558
Bsp19I	CCATGG	1 cut(s)	684
BspANI	GGCC	5 cut(s)	93, 120, 243, 432, 787
BspCNI	CTCAG	1 cut(s)	525
BspFNI	CGCG	6 cut(s)	21, 23, 115, 117, 566, 694
BspLI	GGNNCC	2 cut(s)	103, 755
BspMI	ACCTGC	2 cut(s)	84, 541
BsrBI	CCGCTC	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	2 cut(s)	397, 709
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	4 cut(s)	149, 209, 255, 302
BstC8I	GCNNGC	6 cut(s)	220, 267, 355, 505, 509, 558
BstDEI	CTNAG	2 cut(s)	343, 512
BstDSI	CCRYGG	1 cut(s)	684
BstF5I	GGATG	3 cut(s)	52, 174, 750
BstFNI	CGCG	6 cut(s)	21, 23, 115, 117, 566, 694
BstHHI	GCGC	3 cut(s)	23, 117, 524
BstMAI	GTCTC	3 cut(s)	307, 648, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	2 cut(s)	397, 709
BstNSI	RCATGY	2 cut(s)	216, 265
BstSCI	CCNGG	2 cut(s)	395, 707
BstSLI	GKGCMC	1 cut(s)	558
BstUI	CGCG	6 cut(s)	21, 23, 115, 117, 566, 694
BstV1I	GCAGC	3 cut(s)	167, 326, 448
BsuRI	GGCC	5 cut(s)	93, 120, 243, 432, 787
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	3 cut(s)	52, 174, 750
BtsIMutI	CAGTG	1 cut(s)	740
BveI	ACCTGC	2 cut(s)	84, 541
Cac8I	GCNNGC	6 cut(s)	220, 267, 355, 505, 509, 558
CfoI	GCGC	3 cut(s)	23, 117, 524
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	3 cut(s)	591, 622, 816
CviAII	CATG	7 cut(s)	213, 262, 466, 619, 666, 685, 718
CviQI	GTAC	3 cut(s)	591, 622, 816
DdeI	CTNAG	2 cut(s)	343, 512
DraIII	CACNNNGTG	1 cut(s)	428
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	3 cut(s)	91, 118, 785
Eam1104I	CTCTTC	4 cut(s)	149, 209, 255, 302
EarI	CTCTTC	4 cut(s)	149, 209, 255, 302
Ecl136II	GAGCTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	684
Eco147I	AGGCCT	1 cut(s)	243
Eco24I	GRGCYC	2 cut(s)	44, 106
Eco47I	GGWCC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	395, 707
EcoT14I	CCWWGG	1 cut(s)	684
EcoT22I	ATGCAT	1 cut(s)	667
EcoT38I	GRGCYC	2 cut(s)	44, 106
ErhI	CCWWGG	1 cut(s)	684
Esp3I	CGTCTC	2 cut(s)	307, 648
FaeI	CATG	7 cut(s)	216, 265, 469, 622, 669, 688, 721
FatI	CATG	7 cut(s)	212, 261, 465, 618, 665, 684, 717
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	9 cut(s)	118, 181, 340, 462, 473, 525, 528, 548, 785
FokI	GGATG	3 cut(s)	39, 161, 757
FriOI	GRGCYC	2 cut(s)	44, 106
Fsp4HI	GCNGC	9 cut(s)	118, 181, 340, 462, 473, 525, 528, 548, 785
GlaI	GCGC	3 cut(s)	22, 116, 523
GluI	GCNGC	9 cut(s)	118, 181, 340, 462, 473, 525, 528, 548, 785
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	5 cut(s)	93, 120, 243, 432, 787
HapII	CCGG	1 cut(s)	414
HhaI	GCGC	3 cut(s)	23, 117, 524
Hin1II	CATG	7 cut(s)	216, 265, 469, 622, 669, 688, 721
Hin6I	GCGC	3 cut(s)	21, 115, 522
HinP1I	GCGC	3 cut(s)	21, 115, 522
HinfI	GANTC	3 cut(s)	689, 697, 835
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	3 cut(s)	245, 385, 470
Hpy166II	GTNNAC	2 cut(s)	495, 556
Hpy188I	TCNGA	2 cut(s)	236, 802
Hpy188III	TCNNGA	3 cut(s)	290, 484, 653
Hpy8I	GTNNAC	2 cut(s)	495, 556
HpyAV	CCTTC	2 cut(s)	664, 767
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	6 cut(s)	79, 183, 556, 627, 665, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	2 cut(s)	343, 512
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	7 cut(s)	216, 265, 469, 622, 669, 688, 721
HspAI	GCGC	3 cut(s)	21, 115, 522
LmnI	GCTCC	3 cut(s)	101, 753, 771
Lsp1109I	GCAGC	3 cut(s)	167, 326, 448
LweI	GCATC	3 cut(s)	484, 574, 652
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	1 cut(s)	391
MbiI	CCGCTC	1 cut(s)	404
MboII	GAAGA	4 cut(s)	136, 196, 242, 289
MfeI	CAATTG	2 cut(s)	442, 843
MhlI	GDGCHC	5 cut(s)	44, 106, 220, 513, 558
MluCI	AATT	4 cut(s)	332, 442, 712, 843
MmeI	TCCRAC	3 cut(s)	181, 259, 330
Mph1103I	ATGCAT	1 cut(s)	667
MroXI	GAANNNNTTC	2 cut(s)	491, 537
MslI	CAYNNNNRTG	2 cut(s)	213, 617
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	2 cut(s)	397, 709
MunI	CAATTG	2 cut(s)	442, 843
MvaI	CCWGG	2 cut(s)	397, 709
MvnI	CGCG	6 cut(s)	21, 23, 115, 117, 566, 694
MwoI	GCNNNNNNNGC	1 cut(s)	553
NcoI	CCATGG	1 cut(s)	684
NlaIII	CATG	7 cut(s)	216, 265, 469, 622, 669, 688, 721
NlaIV	GGNNCC	2 cut(s)	103, 755
NmeAIII	GCCGAG	2 cut(s)	69, 774
NmuCI	GTSAC	1 cut(s)	391
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	2 cut(s)	216, 265
OliI	CACNNNNGTG	1 cut(s)	213
PaqCI	CACCTGC	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PdmI	GAANNNNTTC	2 cut(s)	491, 537
PfeI	GAWTC	3 cut(s)	689, 697, 835
Pfl23II	CGTACG	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	707
PkrI	GCNGC	9 cut(s)	119, 182, 341, 463, 474, 526, 529, 549, 786
Psp124BI	GAGCTC	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	395, 707
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	395, 707
PspLI	CGTACG	1 cut(s)	815
PspN4I	GGNNCC	2 cut(s)	103, 755
PspPI	GGNCC	1 cut(s)	399
RsaI	GTAC	3 cut(s)	592, 623, 817
RsaNI	GTAC	3 cut(s)	591, 622, 816
RseI	CAYNNNNRTG	2 cut(s)	213, 617
SacI	GAGCTC	1 cut(s)	44
SatI	GCNGC	9 cut(s)	118, 181, 340, 462, 473, 525, 528, 548, 785
Sau96I	GGNCC	1 cut(s)	399
ScrFI	CCNGG	2 cut(s)	397, 709
SduI	GDGCHC	5 cut(s)	44, 106, 220, 513, 558
SfaNI	GCATC	3 cut(s)	484, 574, 652
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	2 cut(s)	213, 617
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	4 cut(s)	332, 442, 712, 843
SseBI	AGGCCT	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	395, 707
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	3 cut(s)	366, 652, 833
TasI	AATT	4 cut(s)	332, 442, 712, 843
TatI	WGTACW	2 cut(s)	590, 621
TauI	GCSGC	6 cut(s)	120, 475, 527, 530, 550, 787
TfiI	GAWTC	3 cut(s)	689, 697, 835
TscAI	CASTG	1 cut(s)	740
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	3 cut(s)	180, 339, 461
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	399
XapI	RAATTY	2 cut(s)	332, 712
XceI	RCATGY	2 cut(s)	216, 265
XmnI	GAANNNNTTC	2 cut(s)	491, 537
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.