Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026821.1

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

9585 .. 10365

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026821.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 781 bp

atgctacgcccgtgtgcttgcgcgtgtcgtagaaccttgacctcaatcaaccatccggttcttcccacacctcccagcctcaacctgcaaaccaatactcttctcggcgaagtagcggccctcgccacgcgcggccaacttaacgaagcgctctcactcttctacactcttcaaccgccaccaactcaaactcactgcaaccaaacctatgccactctcttccacgcatgtgctcgccaccactccctccaacaaggcctctccttgcaccattacatggtcgcccacaaccccattactcctcatcccgacctctttgtctccaaccacctcatcaacatgtacgccaaatttggctacttagaccgtgcccaccgactgttcgatgaaatgcccagaagaaacctcgtcacctggaccgctctcatttccgggtacgcacagcggggtcgagctgacaattgttttcgtttattttcttccatgttgacgcattacctcccgaatgagtttgcttttgccagcgtgctaagttcgtgtgccgatagcgatggtggacgtggccggcaggtacacgccctcgctttgaaaatgtctttggatgcttgcctttacgttgcgaatgctctcattactatgtatagcaaggtgtgtgatcatggaggtgtgtttgatgttagtagagacgaggcatgcaaggtgtttagaagcatggaatcccggaatcttatatcgtggaattccatgattgcagggtttcagtgtcgtggacgtggagctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

260

Amino Acids

29.02

Weight (kDa)

8.92

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
Acc36I	ACCTGC	2 cut(s)	93, 559
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	422
AccII	CGCG	3 cut(s)	23, 130, 132
AciI	CCGC	5 cut(s)	116, 132, 176, 420, 445
AcoI	YGGCCR	2 cut(s)	133, 562
AcsI	RAATTY	2 cut(s)	350, 739
AfaI	GTAC	3 cut(s)	344, 437, 573
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	173, 589
AjiI	CACGTC	2 cut(s)	560, 773
AjnI	CCWGG	1 cut(s)	413
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	455, 779
AluI	AGCT	2 cut(s)	455, 779
Alw21I	GWGCWC	2 cut(s)	235, 781
Alw26I	GTCTC	2 cut(s)	325, 678
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	4 cut(s)	117, 133, 256, 562
ApoI	RAATTY	2 cut(s)	350, 739
AspLEI	GCGC	3 cut(s)	23, 132, 151
AspS9I	GGNCC	2 cut(s)	118, 417
AsuC2I	CCSGG	2 cut(s)	433, 721
AsuHPI	GGTGA	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	781
Bbv12I	GWGCWC	2 cut(s)	235, 781
BccI	CCATC	2 cut(s)	60, 545
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	2 cut(s)	433, 721
BcoDI	GTCTC	2 cut(s)	325, 678
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	2 cut(s)	93, 559
BisI	GCNGC	2 cut(s)	117, 133
BlsI	GCNGC	2 cut(s)	118, 134
Bme1390I	CCNGG	3 cut(s)	415, 433, 721
Bme18I	GGWCC	1 cut(s)	417
BmgBI	CACGTC	2 cut(s)	560, 773
BmgT120I	GGNCC	2 cut(s)	118, 417
BmrFI	CCNGG	3 cut(s)	415, 433, 721
BmsI	GCATC	1 cut(s)	592
BpuMI	CCSGG	2 cut(s)	433, 721
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	415
BseGI	GGATG	3 cut(s)	52, 304, 607
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	3 cut(s)	23, 130, 132
BshFI	GGCC	4 cut(s)	119, 135, 258, 564
BsiHKAI	GWGCWC	2 cut(s)	235, 781
BsiSI	CCGG	4 cut(s)	56, 432, 565, 721
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	325, 678
BsmBI	CGTCTC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	4 cut(s)	119, 135, 258, 564
Bsp1286I	GDGCHC	3 cut(s)	235, 373, 781
Bsp143I	GATC	1 cut(s)	655
BspACI	CCGC	5 cut(s)	116, 132, 176, 420, 445
BspANI	GGCC	4 cut(s)	119, 135, 258, 564
BspFNI	CGCG	3 cut(s)	23, 130, 132
BspMI	ACCTGC	2 cut(s)	93, 559
BsrBI	CCGCTC	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	564
BssMI	GATC	1 cut(s)	655
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	368, 381
Bst6I	CTCTTC	4 cut(s)	105, 164, 174, 224
BstC8I	GCNNGC	7 cut(s)	19, 235, 523, 527, 566, 607, 694
BstDEI	CTNAG	2 cut(s)	361, 530
BstF5I	GGATG	3 cut(s)	52, 304, 607
BstFNI	CGCG	3 cut(s)	23, 130, 132
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	3 cut(s)	23, 132, 151
BstKTI	GATC	1 cut(s)	658
BstMAI	GTCTC	2 cut(s)	325, 678
BstMBI	GATC	1 cut(s)	655
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	3 cut(s)	231, 343, 696
BstSCI	CCNGG	3 cut(s)	413, 431, 719
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	3 cut(s)	23, 130, 132
BsuRI	GGCC	4 cut(s)	119, 135, 258, 564
BtgZI	GCGATG	1 cut(s)	564
BtrI	CACGTC	2 cut(s)	560, 773
BtsCI	GGATG	3 cut(s)	52, 304, 607
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	193, 767
BveI	ACCTGC	2 cut(s)	93, 559
Cac8I	GCNNGC	7 cut(s)	19, 235, 523, 527, 566, 607, 694
CfoI	GCGC	3 cut(s)	23, 132, 151
Cfr10I	RCCGGY	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	118, 417
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	3 cut(s)	343, 436, 572
CviAII	CATG	8 cut(s)	228, 277, 340, 484, 659, 693, 712, 745
CviJI	RGCY	8 cut(s)	78, 119, 135, 258, 357, 455, 564, 779
CviKI_1	RGCY	8 cut(s)	78, 119, 135, 258, 357, 455, 564, 779
CviQI	GTAC	3 cut(s)	343, 436, 572
DdeI	CTNAG	2 cut(s)	361, 530
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	133, 562
Eam1104I	CTCTTC	4 cut(s)	105, 164, 174, 224
EarI	CTCTTC	4 cut(s)	105, 164, 174, 224
Ecl136II	GAGCTC	1 cut(s)	779
Eco147I	AGGCCT	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	417
Eco47III	AGCGCT	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	413
EcoT38I	GRGCYC	1 cut(s)	781
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	8 cut(s)	231, 280, 343, 487, 662, 696, 715, 748
FatI	CATG	8 cut(s)	227, 276, 339, 483, 658, 692, 711, 744
FauI	CCCGC	1 cut(s)	438
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	117, 133
FokI	GGATG	3 cut(s)	39, 291, 614
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	2 cut(s)	117, 133
GlaI	GCGC	3 cut(s)	22, 131, 150
GluI	GCNGC	2 cut(s)	117, 133
GsaI	CCCAGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	119, 135, 258, 564
HapII	CCGG	4 cut(s)	56, 432, 565, 721
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	3 cut(s)	23, 132, 151
Hin1II	CATG	8 cut(s)	231, 280, 343, 487, 662, 696, 715, 748
Hin6I	GCGC	3 cut(s)	21, 130, 149
HinP1I	GCGC	3 cut(s)	21, 130, 149
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	2 cut(s)	716, 724
HpaII	CCGG	4 cut(s)	56, 432, 565, 721
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	4 cut(s)	489, 557, 574, 770
Hpy188III	TCNNGA	2 cut(s)	308, 502
Hpy8I	GTNNAC	4 cut(s)	489, 557, 574, 770
HpyCH4III	ACNGT	2 cut(s)	368, 381
HpyCH4IV	ACGT	3 cut(s)	559, 615, 772
HpyCH4V	TGCA	5 cut(s)	88, 198, 268, 696, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	2 cut(s)	361, 530
HpySE526I	ACGT	3 cut(s)	559, 615, 772
Hsp92II	CATG	8 cut(s)	231, 280, 343, 487, 662, 696, 715, 748
HspAI	GCGC	3 cut(s)	21, 130, 149
KroI	GCCGGC	1 cut(s)	564
KroNI	GCCGGC	1 cut(s)	566
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	1 cut(s)	655
LmnI	GCTCC	1 cut(s)	776
LweI	GCATC	1 cut(s)	592
MaeII	ACGT	3 cut(s)	559, 615, 772
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	1 cut(s)	657
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	1 cut(s)	655
MboII	GAAGA	7 cut(s)	53, 92, 151, 161, 211, 411, 471
MfeI	CAATTG	1 cut(s)	460
MhlI	GDGCHC	3 cut(s)	235, 373, 781
MluCI	AATT	3 cut(s)	350, 460, 739
MmeI	TCCRAC	2 cut(s)	274, 348
MroNI	GCCGGC	1 cut(s)	564
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	4 cut(s)	228, 338, 635, 663
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	4 cut(s)	56, 432, 565, 721
MspR9I	CCNGG	3 cut(s)	415, 433, 721
MunI	CAATTG	1 cut(s)	460
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	3 cut(s)	23, 130, 132
MwoI	GCNNNNNNNGC	1 cut(s)	122
NaeI	GCCGGC	1 cut(s)	566
NciI	CCSGG	2 cut(s)	433, 721
NdeII	GATC	1 cut(s)	655
NgoMIV	GCCGGC	1 cut(s)	564
NlaIII	CATG	8 cut(s)	231, 280, 343, 487, 662, 696, 715, 748
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	3 cut(s)	231, 343, 696
OliI	CACNNNNGTG	1 cut(s)	228
PaeI	GCATGC	1 cut(s)	696
PceI	AGGCCT	1 cut(s)	258
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	628
PdiI	GCCGGC	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	716, 724
PflMI	CCANNNNNTGG	1 cut(s)	277
PfoI	TCCNGGA	1 cut(s)	719
PkrI	GCNGC	2 cut(s)	118, 134
PscI	ACATGT	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	781
Psp6I	CCWGG	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	413
PspPI	GGNCC	2 cut(s)	118, 417
RsaI	GTAC	3 cut(s)	344, 437, 573
RsaNI	GTAC	3 cut(s)	343, 436, 572
RseI	CAYNNNNRTG	4 cut(s)	228, 338, 635, 663
SacI	GAGCTC	1 cut(s)	781
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	117, 133
Sau3AI	GATC	1 cut(s)	655
Sau96I	GGNCC	2 cut(s)	118, 417
ScrFI	CCNGG	3 cut(s)	415, 433, 721
SduI	GDGCHC	3 cut(s)	235, 373, 781
SfaNI	GCATC	1 cut(s)	592
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	4 cut(s)	228, 338, 635, 663
SphI	GCATGC	1 cut(s)	696
Sse9I	AATT	3 cut(s)	350, 460, 739
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	5 cut(s)	116, 132, 176, 420, 445
SstI	GAGCTC	1 cut(s)	781
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	413, 431, 719
TaaI	ACNGT	2 cut(s)	368, 381
TaiI	ACGT	3 cut(s)	562, 618, 775
TaqI	TCGA	2 cut(s)	384, 451
TasI	AATT	3 cut(s)	350, 460, 739
TauI	GCSGC	2 cut(s)	119, 135
TfiI	GAWTC	2 cut(s)	716, 724
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	2 cut(s)	200, 767
TseFI	GTSAC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	200, 767
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	417
XapI	RAATTY	2 cut(s)	350, 739
XceI	RCATGY	3 cut(s)	231, 343, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.