Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

66739472 .. 66740125

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCTTTGGATGCTTGCGTTTACGTTGCCAATGCTCTCATTACCATGTATAGCAAGGTGTGTGATCATGGAGGGTTTCAGTGTCGTCGACTTGGAGCTCAAGCTATTAATCTTTTTGTACAAATGCACGTTGATGGACTCGAGTTTGACCGTGCCACACTTCTCAGCGTTTTTTCTTCCTTGAATGCAGTAAATGACATTGATGATAGCGTGGTCACTAAATTTTGTTATCAACTGCATTGTCTAGTTATCAAAACCGGGTTTATAGTAGGAATTGAAGTGGTCACTGCACTAGTTAAAGCTTATTCAGATCTTGGAGGGGATGTTGCTGACTGTTACAGACTCTTCTCTGACACAAGCTGTCGCCGGGATATTGTTGCGTGGATAGGCATTATGACAATAGTTTCCGAGCGGGACCCTGAAGAAGCACTCTCTCTTTTTCGTCAATTACGCAGGGAGAGTTTAGCTCCATACAGATATACCTTCTCAATTGTTTTAAAAGCCTATGCAAGCCTTGCAACTGAGCGCCATGCCTCGGCAGTTCATTCGCAAGTCATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

188

Amino Acids

20.82

Weight (kDa)

6.18

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	88
AciI	CCGC	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	2 cut(s)	184, 278
AhlI	ACTAGT	1 cut(s)	292
AluBI	AGCT	5 cut(s)	98, 104, 302, 360, 467
AluI	AGCT	5 cut(s)	98, 104, 302, 360, 467
Alw21I	GWGCWC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	2 cut(s)	259, 368
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BccI	CCATC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BclI	TGATCA	1 cut(s)	64
BcnI	CCSGG	2 cut(s)	259, 368
BcuI	ACTAGT	1 cut(s)	292
BfaI	CTAG	2 cut(s)	245, 293
BfoI	RGCGCY	1 cut(s)	529
BglII	AGATCT	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	259, 368
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	416, 417
BmrFI	CCNGG	2 cut(s)	259, 368
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	259, 368
BsaJI	CCNNGG	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	2 cut(s)	16, 328
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	2 cut(s)	178, 513
BsgI	GTGCAG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	258, 367
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	64, 310
BspACI	CCGC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	177, 514
BspLI	GGNNCC	2 cut(s)	416, 417
BsrBI	CCGCTC	1 cut(s)	412
BsrGI	TGTACA	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	2 cut(s)	64, 310
Bst4CI	ACNGT	2 cut(s)	152, 335
Bst6I	CTCTTC	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstAUI	TGTACA	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	16, 511
BstDEI	CTNAG	2 cut(s)	164, 522
BstF5I	GGATG	2 cut(s)	16, 328
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	2 cut(s)	67, 313
BstMBI	GATC	2 cut(s)	64, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstSCI	CCNGG	2 cut(s)	257, 366
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	16, 328
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	86, 285
Cac8I	GCNNGC	2 cut(s)	16, 511
CfoI	GCGC	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	3 cut(s)	46, 68, 530
CviJI	RGCY	7 cut(s)	98, 104, 302, 360, 467, 503, 513
CviKI_1	RGCY	7 cut(s)	98, 104, 302, 360, 467, 503, 513
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	2 cut(s)	164, 522
DpnI	GATC	2 cut(s)	66, 312
DpnII	GATC	2 cut(s)	64, 310
DraI	TTTAAA	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Ecl136II	GAGCTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	3 cut(s)	49, 71, 533
FaiI	YATR	9 cut(s)	47, 51, 69, 266, 395, 472, 480, 507, 531
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	3 cut(s)	45, 67, 529
FauI	CCCGC	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	88
FokI	GGATG	2 cut(s)	23, 335
FriOI	GRGCYC	1 cut(s)	100
FspBI	CTAG	2 cut(s)	245, 293
GlaI	GCGC	1 cut(s)	527
HaeII	RGCGCY	1 cut(s)	529
HapII	CCGG	2 cut(s)	258, 367
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	3 cut(s)	49, 71, 533
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	2 cut(s)	138, 342
HpaII	CCGG	2 cut(s)	258, 367
Hpy166II	GTNNAC	2 cut(s)	22, 89
Hpy188I	TCNGA	3 cut(s)	310, 352, 409
Hpy8I	GTNNAC	2 cut(s)	22, 89
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	2 cut(s)	152, 335
HpyCH4IV	ACGT	2 cut(s)	24, 129
HpyCH4V	TGCA	6 cut(s)	127, 188, 238, 290, 509, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	2 cut(s)	164, 522
HpySE526I	ACGT	2 cut(s)	24, 129
Hsp92II	CATG	3 cut(s)	49, 71, 533
HspAI	GCGC	1 cut(s)	526
KflI	GGGWCCC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	64, 310
LmnI	GCTCC	2 cut(s)	95, 472
LpnPI	CCDG	4 cut(s)	271, 380, 432, 439
MaeI	CTAG	2 cut(s)	245, 293
MaeII	ACGT	2 cut(s)	24, 129
MaeIII	GTNAC	3 cut(s)	214, 283, 335
MalI	GATC	2 cut(s)	66, 312
MbiI	CCGCTC	1 cut(s)	412
MboI	GATC	2 cut(s)	64, 310
MboII	GAAGA	3 cut(s)	168, 337, 434
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	4 cut(s)	221, 273, 446, 489
MlyI	GAGTC	2 cut(s)	132, 336
MnlI	CCTC	3 cut(s)	65, 311, 544
MseI	TTAA	3 cut(s)	108, 297, 497
MslI	CAYNNNNRTG	2 cut(s)	44, 132
MspI	CCGG	2 cut(s)	258, 367
MspR9I	CCNGG	2 cut(s)	259, 368
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	515
NciI	CCSGG	2 cut(s)	259, 368
NdeII	GATC	2 cut(s)	64, 310
NlaIII	CATG	3 cut(s)	49, 71, 533
NlaIV	GGNNCC	2 cut(s)	416, 417
NmeAIII	GCCGAG	1 cut(s)	515
NmuCI	GTSAC	2 cut(s)	214, 283
PaeR7I	CTCGAG	1 cut(s)	140
PctI	GAATGC	1 cut(s)	190
PleI	GAGTC	2 cut(s)	132, 336
PpsI	GAGTC	2 cut(s)	132, 336
PpuMI	RGGWCCY	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	416, 417
PspPI	GGNCC	1 cut(s)	415
PspPPI	RGGWCCY	1 cut(s)	415
PspXI	VCTCGAGB	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	44, 132
SacI	GAGCTC	1 cut(s)	100
SalI	GTCGAC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	108, 297, 497
Sau3AI	GATC	2 cut(s)	64, 310
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	132, 336
ScrFI	CCNGG	2 cut(s)	259, 368
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	9 cut(s)	27, 60, 100, 106, 132, 304, 362, 469, 485
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	415
SlaI	CTCGAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	2 cut(s)	44, 132
SmlI	CTYRAG	2 cut(s)	99, 140
SmoI	CTYRAG	2 cut(s)	99, 140
SpeI	ACTAGT	1 cut(s)	292
Sse9I	AATT	4 cut(s)	221, 273, 446, 489
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	2 cut(s)	245, 293
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	2 cut(s)	257, 366
TaaI	ACNGT	2 cut(s)	152, 335
TaiI	ACGT	2 cut(s)	27, 132
TaqI	TCGA	2 cut(s)	88, 141
TasI	AATT	4 cut(s)	221, 273, 446, 489
TatI	WGTACW	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	108, 297, 497
Tru9I	TTAA	3 cut(s)	108, 297, 497
TscAI	CASTG	2 cut(s)	86, 292
TseFI	GTSAC	2 cut(s)	214, 283
Tsp45I	GTSAC	2 cut(s)	214, 283
TspDTI	ATGAA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	86, 292
VpaK11BI	GGWCC	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	2 cut(s)	245, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.