Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

6190559 .. 6193297

Gene Structure 2739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCTACGCCCATGTGGTCGCGCGTGTCGTAGAACCTTGACCTCAATCAACCTTCCGCAAACGAACAATCCTCCACTCAACCCATGTGGTCGCGCGCGGCCAACTCAACGAAGCACTCTCACTCAAACTCACTGCAACCAAACCTACGCCACTCTCTTCCACGCATGCGCTCGCCAGCACTTCCTCCAACAGGGCCTCTCTCTGCACCATTACATGCTTGCCCACAACCCCATCACTCCTCATCCCGACCTTTTTGTCTCCAACCACCTCATCATCATGTACGCCAAATTTGGCTACCTAGACCATGCCCACCACCTGTTCGATGAAATGCCCAGGAGAAACCTCGTCACCTGGACCGCTCTCATTTCCGAGTACGCACAGCGGGGTCGATCTGAGGCTTGTTTTCCTTTATTTGCTGCCATGTTGGTGCATTACCTCCCGAATGAGTTTGCATTTTCCAGCGTGGTTAGTTCGTGTGCCGATAGTGATGGTGGATATGGCCGGCAGGTACACGCCCTCGCTTTGAAAATGTCTTTGGATGTTGCCAATGCTCTCATTACCATGTACAGCAAGGTGTGTGATCATGGAGGTGTGTTTGTTTTATATCGTGGAATTCCATGCTCTTATCACCCTAGTGGTCACCAAGTTTTGTTATCAACTGCATTGTCACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

224

Amino Acids

25.1

Weight (kDa)

8.91

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	114 - 160	8.8e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	496
AccBSI	CCGCTC	1 cut(s)	359
AccII	CGCG	5 cut(s)	21, 23, 93, 95, 97
AciI	CCGC	4 cut(s)	56, 97, 357, 382
AcoI	YGGCCR	2 cut(s)	98, 499
AcsI	RAATTY	2 cut(s)	287, 612
AfaI	GTAC	4 cut(s)	281, 374, 510, 566
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	526
AjnI	CCWGG	2 cut(s)	332, 350
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AleI	CACNNNNGTG	1 cut(s)	633
Alw26I	GTCTC	1 cut(s)	262
AoxI	GGCC	3 cut(s)	98, 193, 499
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	2 cut(s)	287, 612
AspLEI	GCGC	4 cut(s)	23, 95, 97, 170
AspS9I	GGNCC	2 cut(s)	193, 354
AsuHPI	GGTGA	3 cut(s)	340, 620, 632
AvaII	GGWCC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	2 cut(s)	239, 482
BciT130I	CCWGG	2 cut(s)	334, 352
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	299, 633
BfuAI	ACCTGC	1 cut(s)	496
BisI	GCNGC	2 cut(s)	98, 417
BlsI	GCNGC	2 cut(s)	99, 418
Bme1390I	CCNGG	2 cut(s)	334, 352
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	193, 354
BmrFI	CCNGG	2 cut(s)	334, 352
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	334, 352
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	2 cut(s)	241, 544
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	384
BsePI	GCGCGC	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	5 cut(s)	21, 23, 93, 95, 97
BshFI	GGCC	3 cut(s)	100, 195, 501
BsiSI	CCGG	1 cut(s)	502
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	100, 195, 501
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	2 cut(s)	389, 580
BspACI	CCGC	4 cut(s)	56, 97, 357, 382
BspANI	GGCC	3 cut(s)	100, 195, 501
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	5 cut(s)	21, 23, 93, 95, 97
BspMI	ACCTGC	1 cut(s)	496
BsrBI	CCGCTC	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	501
BsrGI	TGTACA	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	501
BssECI	CCNNGG	1 cut(s)	332
BssHII	GCGCGC	1 cut(s)	93
BssMI	GATC	2 cut(s)	389, 580
Bst2UI	CCWGG	2 cut(s)	334, 352
Bst6I	CTCTTC	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	6 cut(s)	95, 166, 172, 176, 219, 503
BstDEI	CTNAG	1 cut(s)	393
BstEII	GGTNACC	1 cut(s)	638
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	241, 544
BstFNI	CGCG	5 cut(s)	21, 23, 93, 95, 97
BstHHI	GCGC	4 cut(s)	23, 95, 97, 170
BstKTI	GATC	2 cut(s)	392, 583
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	2 cut(s)	389, 580
BstNI	CCWGG	2 cut(s)	334, 352
BstNSI	RCATGY	2 cut(s)	168, 217
BstPI	GGTNACC	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	332, 350
BstUI	CGCG	5 cut(s)	21, 23, 93, 95, 97
BstV1I	GCAGC	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	100, 195, 501
BtsCI	GGATG	2 cut(s)	241, 544
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	6 cut(s)	95, 166, 172, 176, 219, 503
CfoI	GCGC	4 cut(s)	23, 95, 97, 170
Cfr10I	RCCGGY	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	193, 354
Csp6I	GTAC	4 cut(s)	280, 373, 509, 565
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviJI	RGCY	5 cut(s)	100, 195, 294, 398, 501
CviKI_1	RGCY	5 cut(s)	100, 195, 294, 398, 501
CviQI	GTAC	4 cut(s)	280, 373, 509, 565
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	391, 582
DpnII	GATC	2 cut(s)	389, 580
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	2 cut(s)	98, 499
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	638
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	612
EcoRII	CCWGG	2 cut(s)	332, 350
FauI	CCCGC	1 cut(s)	375
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	2 cut(s)	98, 417
FokI	GGATG	2 cut(s)	228, 551
Fsp4HI	GCNGC	2 cut(s)	98, 417
FspBI	CTAG	2 cut(s)	299, 633
GlaI	GCGC	4 cut(s)	22, 94, 96, 169
GluI	GCNGC	2 cut(s)	98, 417
HaeIII	GGCC	3 cut(s)	100, 195, 501
HapII	CCGG	1 cut(s)	502
HhaI	GCGC	4 cut(s)	23, 95, 97, 170
Hin6I	GCGC	4 cut(s)	21, 93, 95, 168
HinP1I	GCGC	4 cut(s)	21, 93, 95, 168
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	3 cut(s)	340, 620, 632
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	370, 394
Hpy188III	TCNNGA	2 cut(s)	245, 439
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	5 cut(s)	135, 205, 430, 452, 662
HpyF3I	CTNAG	1 cut(s)	393
HspAI	GCGC	4 cut(s)	21, 93, 95, 168
KroI	GCCGGC	1 cut(s)	501
KroNI	GCCGGC	1 cut(s)	503
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	389, 580
Lsp1109I	GCAGC	1 cut(s)	403
MaeI	CTAG	2 cut(s)	299, 633
MaeIII	GTNAC	3 cut(s)	346, 638, 666
MalI	GATC	2 cut(s)	391, 582
MauBI	CGCGCGCG	1 cut(s)	93
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	2 cut(s)	389, 580
MboII	GAAGA	1 cut(s)	148
MluCI	AATT	2 cut(s)	287, 612
MmeI	TCCRAC	2 cut(s)	211, 285
MroNI	GCCGGC	1 cut(s)	501
MslI	CAYNNNNRTG	5 cut(s)	275, 425, 560, 588, 633
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	334, 352
MvaI	CCWGG	2 cut(s)	334, 352
MvnI	CGCG	5 cut(s)	21, 23, 93, 95, 97
NaeI	GCCGGC	1 cut(s)	503
NdeII	GATC	2 cut(s)	389, 580
NgoMIV	GCCGGC	1 cut(s)	501
NmuCI	GTSAC	3 cut(s)	346, 638, 666
NspI	RCATGY	2 cut(s)	168, 217
OliI	CACNNNNGTG	1 cut(s)	633
PaeI	GCATGC	1 cut(s)	168
PauI	GCGCGC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PdiI	GCCGGC	1 cut(s)	503
PkrI	GCNGC	2 cut(s)	99, 418
Psp6I	CCWGG	2 cut(s)	332, 350
PspEI	GGTNACC	1 cut(s)	638
PspGI	CCWGG	2 cut(s)	332, 350
PspPI	GGNCC	2 cut(s)	193, 354
PteI	GCGCGC	1 cut(s)	93
RsaI	GTAC	4 cut(s)	281, 374, 510, 566
RsaNI	GTAC	4 cut(s)	280, 373, 509, 565
RseI	CAYNNNNRTG	5 cut(s)	275, 425, 560, 588, 633
SatI	GCNGC	2 cut(s)	98, 417
Sau3AI	GATC	2 cut(s)	389, 580
Sau96I	GGNCC	2 cut(s)	193, 354
ScrFI	CCNGG	2 cut(s)	334, 352
SinI	GGWCC	1 cut(s)	354
SmiMI	CAYNNNNRTG	5 cut(s)	275, 425, 560, 588, 633
SphI	GCATGC	1 cut(s)	168
Sse9I	AATT	2 cut(s)	287, 612
SsiI	CCGC	4 cut(s)	56, 97, 357, 382
SspMI	CTAG	2 cut(s)	299, 633
StyD4I	CCNGG	2 cut(s)	332, 350
TaqI	TCGA	2 cut(s)	321, 388
TasI	AATT	2 cut(s)	287, 612
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	1 cut(s)	100
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	3 cut(s)	346, 638, 666
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	3 cut(s)	346, 638, 666
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	287, 612
XceI	RCATGY	2 cut(s)	168, 217
XspI	CTAG	2 cut(s)	299, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.