Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037610.1

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

639 .. 1280

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037610.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgctacgccaatgtgctcgcgcgcgtcatagaaccttcacctcaatcaacaatccggttgttcccacacctcccagcctcaacctgcaaacgaacaatcttctcggcgaagtaggggccctggccacgcgcggccaactcaacgaagcactctcactcttctacactcttcaaccgccaccacctcaaactcactgcaaccaaacctacgccactctcttccacgcatgcgctcgccaccactccctccaacaaggcctctctctgcaccattacatgcttgcccacaaccccatcactcctccagacctctttgtctccaaccacctcatcaacatgtactccaaattcggctacctagaccacgcccgccaactgttcgatgaaatgcccagaagaaacctcgtcacctggaccgctctcatttccgggtacgcacagcggggtcgggctgtagcttgttttcgtttatttgctgccttgttggcgcattacctcccgaatgagtttgcatttaccagcgtgcttagttcgtgtgccgatagtgatggtggatatggccggcaggcacacgccctccgctttgaaaatgtctttggatgcttgcgtttacgttgcgactgctctcattaccatgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

213

Amino Acids

24.02

Weight (kDa)

9.01

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	419
AccII	CGCG	5 cut(s)	21, 23, 25, 130, 132
AciI	CCGC	6 cut(s)	132, 176, 370, 417, 442, 580
AcoI	YGGCCR	3 cut(s)	123, 133, 559
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	2 cut(s)	341, 434
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	173, 587
AjnI	CCWGG	2 cut(s)	120, 410
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	322
AoxI	GGCC	5 cut(s)	117, 123, 133, 256, 559
ApaI	GGGCCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	5 cut(s)	23, 25, 132, 233, 490
AspS9I	GGNCC	3 cut(s)	117, 118, 414
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	31, 400
AvaII	GGWCC	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	2 cut(s)	302, 542
BciT130I	CCWGG	2 cut(s)	122, 412
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	485
BisI	GCNGC	2 cut(s)	133, 477
BlsI	GCNGC	2 cut(s)	134, 478
Bme1390I	CCNGG	3 cut(s)	122, 412, 430
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	3 cut(s)	117, 118, 414
BmiI	GGNNCC	2 cut(s)	118, 119
BmrFI	CCNGG	3 cut(s)	122, 412, 430
BmsI	GCATC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	4 cut(s)	326, 356, 561, 591
Bse118I	RCCGGY	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	122, 412
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	605
BsePI	GCGCGC	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	5 cut(s)	21, 23, 25, 130, 132
BshFI	GGCC	5 cut(s)	119, 125, 135, 258, 561
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	56, 429, 562
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	5 cut(s)	119, 125, 135, 258, 561
Bsp120I	GGGCCC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	19, 121
BspACI	CCGC	6 cut(s)	132, 176, 370, 417, 442, 580
BspANI	GGCC	5 cut(s)	119, 125, 135, 258, 561
BspFNI	CGCG	5 cut(s)	21, 23, 25, 130, 132
BspLI	GGNNCC	2 cut(s)	118, 119
BspMI	ACCTGC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	561
BssECI	CCNNGG	1 cut(s)	120
BssHII	GCGCGC	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	122, 412
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	3 cut(s)	164, 174, 224
BstDEI	CTNAG	1 cut(s)	527
BstF5I	GGATG	1 cut(s)	605
BstFNI	CGCG	5 cut(s)	21, 23, 25, 130, 132
BstHHI	GCGC	5 cut(s)	23, 25, 132, 233, 490
BstMAI	GTCTC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	2 cut(s)	122, 412
BstNSI	RCATGY	3 cut(s)	231, 280, 340
BstSCI	CCNGG	3 cut(s)	120, 410, 428
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	121
BstUI	CGCG	5 cut(s)	21, 23, 25, 130, 132
BstV1I	GCAGC	1 cut(s)	463
BsuRI	GGCC	5 cut(s)	119, 125, 135, 258, 561
BtsCI	GGATG	1 cut(s)	605
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	93
CfoI	GCGC	5 cut(s)	23, 25, 132, 233, 490
Cfr10I	RCCGGY	1 cut(s)	561
Cfr13I	GGNCC	3 cut(s)	117, 118, 414
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	340, 433
CviAII	CATG	4 cut(s)	228, 277, 337, 635
CviJI	RGCY	9 cut(s)	78, 119, 125, 135, 258, 354, 452, 458, 561
CviKI_1	RGCY	9 cut(s)	78, 119, 125, 135, 258, 354, 452, 458, 561
CviQI	GTAC	2 cut(s)	340, 433
DdeI	CTNAG	1 cut(s)	527
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	3 cut(s)	123, 133, 559
Eam1104I	CTCTTC	3 cut(s)	164, 174, 224
EarI	CTCTTC	3 cut(s)	164, 174, 224
Eco147I	AGGCCT	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	414
EcoO109I	RGGNCCY	2 cut(s)	117, 118
EcoRII	CCWGG	2 cut(s)	120, 410
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	4 cut(s)	231, 280, 340, 638
FaiI	YATR	7 cut(s)	30, 229, 278, 338, 558, 636, 640
FatI	CATG	4 cut(s)	227, 276, 336, 634
FauI	CCCGC	2 cut(s)	377, 435
Fnu4HI	GCNGC	2 cut(s)	133, 477
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	133, 477
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	5 cut(s)	22, 24, 131, 232, 489
GluI	GCNGC	2 cut(s)	133, 477
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	119, 125, 135, 258, 561
HapII	CCGG	3 cut(s)	56, 429, 562
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	5 cut(s)	23, 25, 132, 233, 490
Hin1II	CATG	4 cut(s)	231, 280, 340, 638
Hin6I	GCGC	5 cut(s)	21, 23, 130, 231, 488
HinP1I	GCGC	5 cut(s)	21, 23, 130, 231, 488
HpaII	CCGG	3 cut(s)	56, 429, 562
HphI	GGTGA	2 cut(s)	31, 400
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188III	TCNNGA	2 cut(s)	305, 499
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	4 cut(s)	88, 198, 268, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	1 cut(s)	527
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	4 cut(s)	231, 280, 340, 638
HspAI	GCGC	5 cut(s)	21, 23, 130, 231, 488
KroI	GCCGGC	1 cut(s)	561
KroNI	GCCGGC	1 cut(s)	563
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	1 cut(s)	406
MauBI	CGCGCGCG	1 cut(s)	21
MbiI	CCGCTC	1 cut(s)	419
MboII	GAAGA	5 cut(s)	92, 151, 161, 211, 408
MhlI	GDGCHC	2 cut(s)	19, 121
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	347
MluNI	TGGCCA	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	274, 345
Mox20I	TGGCCA	1 cut(s)	125
MroNI	GCCGGC	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	125
MslI	CAYNNNNRTG	2 cut(s)	335, 633
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	3 cut(s)	56, 429, 562
MspR9I	CCNGG	3 cut(s)	122, 412, 430
MvaI	CCWGG	2 cut(s)	122, 412
MvnI	CGCG	5 cut(s)	21, 23, 25, 130, 132
MwoI	GCNNNNNNNGC	1 cut(s)	485
NaeI	GCCGGC	1 cut(s)	563
NciI	CCSGG	1 cut(s)	430
NgoMIV	GCCGGC	1 cut(s)	561
NlaIII	CATG	4 cut(s)	231, 280, 340, 638
NlaIV	GGNNCC	2 cut(s)	118, 119
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	406
NspI	RCATGY	3 cut(s)	231, 280, 340
PaeI	GCATGC	1 cut(s)	231
PauI	GCGCGC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	258
PciI	ACATGT	1 cut(s)	336
PdiI	GCCGGC	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	134, 478
PscI	ACATGT	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	120, 410
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	120, 410
PspN4I	GGNNCC	2 cut(s)	118, 119
PspOMI	GGGCCC	1 cut(s)	117
PspPI	GGNCC	3 cut(s)	117, 118, 414
PteI	GCGCGC	1 cut(s)	21
RsaI	GTAC	2 cut(s)	341, 434
RsaNI	GTAC	2 cut(s)	340, 433
RseI	CAYNNNNRTG	2 cut(s)	335, 633
SatI	GCNGC	2 cut(s)	133, 477
Sau96I	GGNCC	3 cut(s)	117, 118, 414
ScrFI	CCNGG	3 cut(s)	122, 412, 430
SduI	GDGCHC	2 cut(s)	19, 121
SfaNI	GCATC	1 cut(s)	590
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	414
SmiMI	CAYNNNNRTG	2 cut(s)	335, 633
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	1 cut(s)	347
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	6 cut(s)	132, 176, 370, 417, 442, 580
SspMI	CTAG	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	120, 410, 428
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	1 cut(s)	381
TasI	AATT	1 cut(s)	347
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	135
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	3 cut(s)	231, 280, 340
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.