Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

6232089 .. 6234617

Gene Structure 2529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGCCACTCTCTTCCACGCATGTGCTCGCCACCACTCCCTCCAACAAGGCGTCTCTCTGCACCATTTCATGCTTGCCCACAACCTCAGCCCAAAAGAAACCTCGTCACCTGGACCGCTCTCATTTCTTGGTACGCCCAGCGGGGTCGGGCTGTATTAGTTTATTTGCTGCCATGTTGGCGCATTACCTCCCGAATGAGTTTGCATTTGCCAGCGTGCTAAGTTCGTGTGTCGATAGTGATGGTGGACATGGCCGGCAGGTACACGGCCTCGCTTTGAAAATGTCTTTGGATGCTTGCGTTTACGTTGCGAATGCTCTCATTACCATGTATAGCAAGCTGTGTGATCATGGAGGTGTGTTTGATGTTAGTAGGGACGAGGCATGGAAGGATTTCAGTGTCGTCGACTTGGAGCTCAAGCTATTGATCTGTTTGTACTTTGTACAAATGCACCTTGATGGACTCGAGTTTGACCGTGCCACACTTCTCAGCGTTTTTTCTTCCTTGAATGGAGTAAATGGCATTGATGATATGGTGGTCACTAGGTTTTGTTATCAACTGCATTGTCTAGTTATCAAAACGGGGTTTATATTAGGAACTGAAGTGGTCACTGCGTTAGTAAAAGCTTATTCAAATCTTGGAGGGAATGTTGCCGATTGTTACAGGCTTTTCTCTGAGACAAGCTGTCATCGAGATATTGTTGCGTGGACAGGTATTATGTCGATATTTTCCGAGCGGGACCCTGAAGAAGCACTTTCCCTTTTTCGTCAATTACGCAGGGAGAACTTAGCTCCAGACAGGTATACCTTCTCAATTGTTTTAAAAGCCTATGCAAGCCTTGCAACCGAGCCTCATGCCTCGGCAGTTCATTCTCAAGTTATCAAAGGCGGGTCTGGGGGTGACACAGTCCTTGCAAACGCCTTGATCCATGCATATGCTCGGTGTGGCTCCATTTCCTTGTCTAAGCAAGTTTTTGATGGAATTGAGTTTCATGATGTTGTTTCTTGGAACACAATGCTCAAGGCTTATGCCTTGTATGGACAAGCTGCAGAGGCGCTAGTTGGTGAGGCTGAGAAGCTTGTAAGTAGAATGCCAATGGAGCCTGATTCCGTAGTTTGGAGTGCGCTCCTTGGATCATGTAGGAAGCATGGAAATACACAGTTGGCCAAGTTAGCAGCTGATAGACTGAAGGAGTTGGCTCCAGAGGGTTCATTAGTTGATGTACAAATGTCAAATATATATAGCTCTGATGATAACTTTGGTGAAGCGGGCCTAATTAGGAAGGAAATGAAAGGGTCTCGAAAGCACAAAGAGGAGCAGTTGTACCATCATAGTGAGAAGCTAGCTTTAGTGTTTGCTATTATGAATGAAAGCTGTTTACATGGTGGTAATGCTGCTATAAAAATAATGAAGAATATCAGGGTATGGGTGGATTGCCATAACTTCATGAAGTTAGCATCAAATCTACTTCAAAAAATATTGTTGTCACTACTACAAAATGGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

501

Amino Acids

54.96

Weight (kDa)

6.7

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	231 - 277	3e-08	PPR repeat family
DYW_deaminase	PF14432	434 - 491	6.6e-11	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AccBSI	CCGCTC	2 cut(s)	117, 733
AccI	GTMKAC	2 cut(s)	402, 800
AciI	CCGC	5 cut(s)	115, 140, 733, 885, 1265
AclWI	GGATC	2 cut(s)	916, 1138
AcoI	YGGCCR	2 cut(s)	250, 1161
AcuI	CTGAAG	3 cut(s)	618, 762, 1205
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	6 cut(s)	132, 261, 434, 441, 1221, 1322
AfiI	CCNNNNNNNGG	1 cut(s)	1113
AgsI	TTSAA	4 cut(s)	277, 505, 630, 1469
AhdI	GACNNNNNGTC	1 cut(s)	681
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AleI	CACNNNNGTG	1 cut(s)	20
Alw21I	GWGCWC	2 cut(s)	27, 414
Alw26I	GTCTC	3 cut(s)	57, 668, 1299
AlwI	GGATC	2 cut(s)	916, 1138
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	4 cut(s)	250, 265, 1161, 1267
ApeKI	GCWGC	4 cut(s)	167, 1043, 1172, 1391
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	3 cut(s)	181, 1054, 1123
AspS9I	GGNCC	3 cut(s)	112, 736, 1267
AsuHPI	GGTGA	4 cut(s)	98, 908, 1073, 1271
AsuNHI	GCTAGC	1 cut(s)	1339
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	112, 736
BalI	TGGCCA	1 cut(s)	1163
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	27, 414
BbvCI	CCTCAGC	1 cut(s)	85
BbvI	GCAGC	4 cut(s)	154, 1030, 1184, 1378
BccI	CCATC	4 cut(s)	233, 449, 968, 1332
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	3 cut(s)	57, 668, 1299
BfaI	CTAG	4 cut(s)	540, 566, 1055, 1340
BfmI	CTRYAG	2 cut(s)	1044, 1502
BfoI	RGCGCY	1 cut(s)	1055
BfuAI	ACCTGC	1 cut(s)	247
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	4 cut(s)	168, 1044, 1173, 1392
BlsI	GCNGC	4 cut(s)	169, 1045, 1174, 1393
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	112, 736
BmeRI	GACNNNNNGTC	1 cut(s)	681
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	3 cut(s)	112, 736, 1267
BmiI	GGNNCC	5 cut(s)	737, 738, 946, 1098, 1197
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	280, 1463
BmtI	GCTAGC	1 cut(s)	1343
BpmI	CTGGAG	2 cut(s)	774, 1182
Bpu10I	CCTNAGC	1 cut(s)	85
BpuEI	CTTGAG	3 cut(s)	398, 855, 1001
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	1299
BsaJI	CCNNGG	2 cut(s)	855, 1126
BsaXI	ACNNNNNCTCC	4 cut(s)	630, 660, 1304, 1334
Bsc4I	CCNNNNNNNGG	1 cut(s)	1113
Bse118I	RCCGGY	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	855, 1126
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	1113
BseMII	CTCAG	4 cut(s)	99, 499, 663, 1059
BseRI	GAGGAG	1 cut(s)	1325
BseXI	GCAGC	4 cut(s)	154, 1030, 1184, 1378
BseYI	CCCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	4 cut(s)	252, 267, 1163, 1269
BsiHKAI	GWGCWC	2 cut(s)	27, 414
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	2 cut(s)	386, 749
BslI	CCNNNNNNNGG	1 cut(s)	1113
BsmAI	GTCTC	3 cut(s)	57, 668, 1299
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	386, 749
BsmI	GAATGC	2 cut(s)	316, 1092
BsnI	GGCC	4 cut(s)	252, 267, 1163, 1269
Bso31I	GGTCTC	1 cut(s)	1299
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	27, 414
Bsp1407I	TGTACA	2 cut(s)	439, 1219
Bsp143I	GATC	4 cut(s)	343, 423, 921, 1130
BspACI	CCGC	5 cut(s)	115, 140, 733, 885, 1265
BspANI	GGCC	4 cut(s)	252, 267, 1163, 1269
BspCNI	CTCAG	4 cut(s)	98, 498, 664, 1060
BspHI	TCATGA	2 cut(s)	988, 1443
BspLI	GGNNCC	5 cut(s)	737, 738, 946, 1098, 1197
BspMAI	CTGCAG	1 cut(s)	1048
BspMI	ACCTGC	1 cut(s)	247
BspOI	GCTAGC	1 cut(s)	1343
BspPI	GGATC	2 cut(s)	916, 1138
BspTNI	GGTCTC	1 cut(s)	1299
BsrBI	CCGCTC	2 cut(s)	117, 733
BsrFI	RCCGGY	1 cut(s)	252
BsrGI	TGTACA	2 cut(s)	439, 1219
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	855, 1126
BssMI	GATC	4 cut(s)	343, 423, 921, 1130
BssNAI	GTATAC	1 cut(s)	801
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	1126
Bst1107I	GTATAC	1 cut(s)	801
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	473, 904, 1158
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstAUI	TGTACA	2 cut(s)	439, 1219
BstDEI	CTNAG	7 cut(s)	85, 218, 485, 672, 784, 960, 1068
BstF5I	GGATG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	1055
BstHHI	GCGC	3 cut(s)	181, 1054, 1123
BstKTI	GATC	4 cut(s)	346, 426, 924, 1133
BstMAI	GTCTC	3 cut(s)	57, 668, 1299
BstMBI	GATC	4 cut(s)	343, 423, 921, 1130
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 836, 1049, 1096, 1169
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	2 cut(s)	1044, 1502
BstV1I	GCAGC	4 cut(s)	154, 1030, 1184, 1378
BstZ17I	GTATAC	1 cut(s)	801
BsuRI	GGCC	4 cut(s)	252, 267, 1163, 1269
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	400, 606
BveI	ACCTGC	1 cut(s)	247
CciI	TCATGA	2 cut(s)	988, 1443
CfoI	GCGC	3 cut(s)	181, 1054, 1123
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	3 cut(s)	112, 736, 1267
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	6 cut(s)	131, 260, 433, 440, 1220, 1321
CviQI	GTAC	6 cut(s)	131, 260, 433, 440, 1220, 1321
DdeI	CTNAG	7 cut(s)	85, 218, 485, 672, 784, 960, 1068
DpnI	GATC	4 cut(s)	345, 425, 923, 1132
DpnII	GATC	4 cut(s)	343, 423, 921, 1130
DraI	TTTAAA	1 cut(s)	819
DriI	GACNNNNNGTC	1 cut(s)	681
EaeI	YGGCCR	2 cut(s)	250, 1161
Eam1104I	CTCTTC	1 cut(s)	16
Eam1105I	GACNNNNNGTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	1126
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	1299
Eco47I	GGWCC	2 cut(s)	112, 736
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	3 cut(s)	618, 762, 1205
Eco88I	CYCGRG	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	736
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	1126
EcoT22I	ATGCAT	1 cut(s)	931
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	1126
Esp3I	CGTCTC	1 cut(s)	57
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FaqI	GGGAC	2 cut(s)	386, 749
FauI	CCCGC	4 cut(s)	133, 726, 878, 1258
FauNDI	CATATG	1 cut(s)	931
FbaI	TGATCA	1 cut(s)	343
FblI	GTMKAC	2 cut(s)	402, 800
Fnu4HI	GCNGC	4 cut(s)	168, 1044, 1173, 1392
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	4 cut(s)	168, 1044, 1173, 1392
FspBI	CTAG	4 cut(s)	540, 566, 1055, 1340
GlaI	GCGC	3 cut(s)	180, 1053, 1122
GluI	GCNGC	4 cut(s)	168, 1044, 1173, 1392
GsaI	CCCAGC	1 cut(s)	140
GsuI	CTGGAG	2 cut(s)	774, 1182
HaeII	RGCGCY	1 cut(s)	1055
HaeIII	GGCC	4 cut(s)	252, 267, 1163, 1269
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	3 cut(s)	181, 1054, 1123
Hin1I	GRCGYC	1 cut(s)	50
Hin6I	GCGC	3 cut(s)	179, 1052, 1121
HinP1I	GCGC	3 cut(s)	179, 1052, 1121
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	2 cut(s)	621, 1073
HinfI	GANTC	2 cut(s)	459, 1103
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	4 cut(s)	98, 908, 1073, 1271
Hpy166II	GTNNAC	7 cut(s)	245, 262, 301, 403, 705, 801, 1376
Hpy188I	TCNGA	3 cut(s)	673, 730, 1246
Hpy188III	TCNNGA	7 cut(s)	190, 689, 791, 989, 1199, 1296, 1444
Hpy8I	GTNNAC	7 cut(s)	245, 262, 301, 403, 705, 801, 1376
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	4 cut(s)	379, 814, 1180, 1273
HpyCH4III	ACNGT	3 cut(s)	473, 904, 1158
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	9 cut(s)	60, 203, 448, 559, 830, 839, 911, 929, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 836, 1049, 1096, 1169
HpyF3I	CTNAG	7 cut(s)	85, 218, 485, 672, 784, 960, 1068
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	50
HspAI	GCGC	3 cut(s)	179, 1052, 1121
KflI	GGGWCCC	1 cut(s)	736
KroI	GCCGGC	1 cut(s)	252
KroNI	GCCGGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	343, 423, 921, 1130
LmnI	GCTCC	7 cut(s)	409, 793, 950, 1096, 1128, 1201, 1312
Lsp1109I	GCAGC	4 cut(s)	154, 1030, 1184, 1378
LweI	GCATC	2 cut(s)	280, 1463
MaeI	CTAG	4 cut(s)	540, 566, 1055, 1340
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	6 cut(s)	104, 535, 604, 656, 896, 1482
MalI	GATC	4 cut(s)	345, 425, 923, 1132
MbiI	CCGCTC	2 cut(s)	117, 733
MboI	GATC	4 cut(s)	343, 423, 921, 1130
MboII	GAAGA	4 cut(s)	3, 489, 755, 1420
MfeI	CAATTG	1 cut(s)	810
MhlI	GDGCHC	2 cut(s)	27, 414
MlsI	TGGCCA	1 cut(s)	1163
MluCI	AATT	4 cut(s)	767, 810, 978, 1272
MluNI	TGGCCA	1 cut(s)	1163
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	66
Mox20I	TGGCCA	1 cut(s)	1163
Mph1103I	ATGCAT	1 cut(s)	931
MroNI	GCCGGC	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	1163
MseI	TTAA	1 cut(s)	818
MslI	CAYNNNNRTG	6 cut(s)	20, 323, 351, 453, 930, 1329
Msp20I	TGGCCA	1 cut(s)	1163
MspA1I	CMGCKG	2 cut(s)	140, 1175
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	2 cut(s)	316, 1092
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	5 cut(s)	176, 836, 1049, 1096, 1169
NaeI	GCCGGC	1 cut(s)	254
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	4 cut(s)	343, 423, 921, 1130
NgoMIV	GCCGGC	1 cut(s)	252
NheI	GCTAGC	1 cut(s)	1339
NlaIV	GGNNCC	5 cut(s)	737, 738, 946, 1098, 1197
NmeAIII	GCCGAG	1 cut(s)	836
NmuCI	GTSAC	5 cut(s)	104, 535, 604, 896, 1482
NsiI	ATGCAT	1 cut(s)	931
NspI	RCATGY	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	461
PagI	TCATGA	2 cut(s)	988, 1443
PctI	GAATGC	2 cut(s)	316, 1092
PdiI	GCCGGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	1103
PflFI	GACNNNGTC	1 cut(s)	902
PkrI	GCNGC	4 cut(s)	169, 1045, 1174, 1393
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PpuMI	RGGWCCY	1 cut(s)	736
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	5 cut(s)	737, 738, 946, 1098, 1197
PspPI	GGNCC	3 cut(s)	112, 736, 1267
PspPPI	RGGWCCY	1 cut(s)	736
PspXI	VCTCGAGB	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	1048
PsyI	GACNNNGTC	1 cut(s)	902
PvuII	CAGCTG	1 cut(s)	1175
RsaI	GTAC	6 cut(s)	132, 261, 434, 441, 1221, 1322
RsaNI	GTAC	6 cut(s)	131, 260, 433, 440, 1220, 1321
RseI	CAYNNNNRTG	6 cut(s)	20, 323, 351, 453, 930, 1329
SacI	GAGCTC	1 cut(s)	414
SalI	GTCGAC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	818
SatI	GCNGC	4 cut(s)	168, 1044, 1173, 1392
Sau3AI	GATC	4 cut(s)	343, 423, 921, 1130
Sau96I	GGNCC	3 cut(s)	112, 736, 1267
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	27, 414
SfaNI	GCATC	2 cut(s)	280, 1463
SfcI	CTRYAG	2 cut(s)	1044, 1502
Sfr274I	CTCGAG	1 cut(s)	461
SinI	GGWCC	2 cut(s)	112, 736
SlaI	CTCGAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	6 cut(s)	20, 323, 351, 453, 930, 1329
SmlI	CTYRAG	4 cut(s)	413, 461, 870, 1016
SmoI	CTYRAG	4 cut(s)	413, 461, 870, 1016
Sse9I	AATT	4 cut(s)	767, 810, 978, 1272
SsiI	CCGC	5 cut(s)	115, 140, 733, 885, 1265
SspI	AATATT	1 cut(s)	1476
SspMI	CTAG	4 cut(s)	540, 566, 1055, 1340
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	1126
TaaI	ACNGT	3 cut(s)	473, 904, 1158
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	6 cut(s)	231, 402, 462, 688, 719, 1297
TasI	AATT	4 cut(s)	767, 810, 978, 1272
TatI	WGTACW	3 cut(s)	432, 439, 1219
TfiI	GAWTC	1 cut(s)	1103
Tru1I	TTAA	1 cut(s)	818
Tru9I	TTAA	1 cut(s)	818
TscAI	CASTG	2 cut(s)	400, 613
TseFI	GTSAC	5 cut(s)	104, 535, 604, 896, 1482
TseI	GCWGC	4 cut(s)	167, 1043, 1172, 1391
Tsp45I	GTSAC	5 cut(s)	104, 535, 604, 896, 1482
TspGWI	ACGGA	1 cut(s)	1096
TspRI	CASTG	2 cut(s)	400, 613
Tth111I	GACNNNGTC	1 cut(s)	902
VpaK11BI	GGWCC	2 cut(s)	112, 736
XceI	RCATGY	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	461
XmiI	GTMKAC	2 cut(s)	402, 800
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	4 cut(s)	540, 566, 1055, 1340
Zsp2I	ATGCAT	1 cut(s)	931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.