Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

595261 .. 599877

Gene Structure 4617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00560.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGGTGGCGAAGAAAGAGCGGAATATAAGTGGGCTGGGCCTAGTCGGGTTCGGGGCTCCACCATTTAAAAAAGAAATACGGACTAAATTAAAAAAGAAATACGGACTAAATCAATTAGTCGGGTTCGTGATGCTACGGCTATATTCTCGCGCGTATCGTAGAACCTTGAGCTCAATCAACCATCCACCTCCCCCCAGCCTCAACCTGCAAAACATTCTCGGCCAAGTAGGAGCCCTTGCCACGCGCGGCCAACTCAACGAGGCACTCTCACTCTTCTACGCTCTCCAACCGCCACCCTCTCTCATCCGCTGCAACCAAACCTACGCCACTCTCTTCCACGCATGTGCTCGCCACAATTCTCTCCGACAAGGCCTCTCTCTTCACCACTACATGCTTGCTCACAACCCGACCACCCCTCCCGACCTCTTCGTCTCCAACCACCTCATCAACATGTACTCCAAATTCGGCTGCTTAGACCACGCCCGCCACCTGTTCGATGAAATGCCCAGCAGAAACCTCGTCACCTGGACCGCTCTCATTTCCGGATACGCACAGCGTGGCCTTGCTGACAATTGTTTTCGTTTATTCGCTGCAATGTTGGCCCATCACCTCCCGAACGAGTTCGCATTTGCCAGCGTGCTCAGTTCGTGTGCCGCAGAAACTGTTCGTGGCCGGCAGGTGCACGCCCTCGCTTTGAAAATGTCCTTAGATGCTTCTACTTACGTTGCCAATGCTCTCATTACCATGTACAGCAAGGGAGGTGTTTGTGATGTTAGTCGACACGATGATGCATGGAAGGTGTTTACAACCATGGAATCAAGGAATCTTATATCCTGGAATTCCATGATTGCGGGGTTTCAGTGTCGTGGACTTGGAGCTCAAGCTATTCTTCTCTTTGTGCAAATGCACCTTGACGGACTTGAGTCTGACCGCGCCACGCTTCTCAGCGTGTTTTCTTCCTTGAACAGAGTAAATGGCATTGATGATATAGTGGCTGCTAAGTTTTGTTACCAACTTCATTGTCTGGTTGTCAAAACCGGGTTTATATTGGGGATTGAAGTGGTCACCGCAATAGTTAAAGCTTATTCGGATCTTGGAGGGGATGTTGCCGATTGTTACAGGCTCTTCTCTGAGACAAGCTGTCATCGGGATATTGTTGCTTGGACAGGCATTATGACAATATTTTCCCAGCGGGACCCTGAAGAGGTAATCTCTCTTTTTTGTCAATTACGCTGGGACAATTTAACTCCAGACAGGTATACATTCTCTATTGTTTTGAAAGCTTACGCAAGCCTTGCAACCGAGCGCCATGCCTCGGCTGTTCATTCTCAAGTGATCAAAGCTGGGTTTGGGGGTGACACAGTCCTTGCAAATGCTTTGATCCATGCCTATGCTCGGTGTGGCTCCATTTCCTTGTCGAAGAAAGTTTTTGATGGAATTAAGTTCCGTGATGTTGTTTCGTGGAATACAATGCTCAAGGCTTATGCCTTGTACGGACAAGCTGCAGATGCGCTGCAGTTATTTTCACAAATGGACATGAAACCTGATTCTGCTACCTTTGTTTCTCTCCTGTGCGCTTGTAGCCATGCTGGACTGGTAGAAGAAGGGACCAGAATCTTTGACTCCATGCTTGAGAGATATGGCGTTGTGCCTCTGTGTGATCATTATGCCTGCATGGTTGACATTCTTGGTCGAGCTGGACGAGTTTGTGAGGCTGAGAAGCTTGTAAGCAGAATGCCCATGGAGCCCGATTCTGTAGTTTGGAGTGCACTCCTTGGATCATGTAGGAAGCATGGGCATACACAGTTGGCCAAGTTAGCAGCTGATAGACTGAAGGAGTTGGCTCCAGAGGGTTCATTAGTTTATGTACAAATGTCAAACATATATAGCTCTGATGGTAACTTTGGTGAAGCTGGCCTAATTAGGAAGGAAATGAAAGGGTCTAGAGTGAAAAAGGAACCTGGTTTAAGCTGGATTGAGATTGGAAATCAGGTGCATGAGTTCTCCTCTGGAGGCCGACGCCATCCAGAAAGGAATCTTATAAGCAGAGAACTAAAAGAACTGGTTGGACGGTTGAGGGAAATTGGTTATGTTCCAGATACAAGCTCTTCCTTGCACGATGTGGAAGATGAGCACAAGGAGGAGCAGTTGTACCATCACAGTGAGAAGCTAGCTCTAGTGTTTGCTATTATGAATGAAAGCAGTTTACACTGTGGTAGAACTGCTATAAAAATAATGAAAAATATCAGAGTATGTGTGGATTGCCATAACTTCATGAAGTTAGCATCAGATCTGCTTCAAAAGGATATAGTTTTGAGAGACTCAAATCGTTTCCACCACTTCAAAGATGGCATATGTTCTTGCAAGGATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

793

Amino Acids

88.32

Weight (kDa)

8.65

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	483 - 528	4.5e-08	PPR repeat family
E_motif	PF20431	600 - 660	2.6e-14	E motif
DYW_deaminase	PF14432	696 - 792	3.1e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2042
AarI	CACCTGC	1 cut(s)	667
AasI	GACNNNNNNGTC	1 cut(s)	428
Acc36I	ACCTGC	2 cut(s)	213, 667
AccBSI	CCGCTC	2 cut(s)	19, 533
AccI	GTMKAC	2 cut(s)	778, 1259
AccII	CGCG	5 cut(s)	150, 152, 244, 246, 933
AccIII	TCCGGA	1 cut(s)	542
AclWI	GGATC	3 cut(s)	1098, 1375, 1786
AcoI	YGGCCR	4 cut(s)	220, 247, 670, 1809
AcsI	RAATTY	2 cut(s)	461, 838
AcuI	CTGAAG	2 cut(s)	1221, 1853
AcyI	GRCGYC	1 cut(s)	2020
AdeI	CACNNNGTG	2 cut(s)	557, 2122
AfaI	GTAC	5 cut(s)	455, 749, 1493, 1869, 2153
AfiI	CCNNNNNNNGG	3 cut(s)	1204, 1315, 1395
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	6 cut(s)	697, 964, 1058, 1279, 2300, 2344
AhdI	GACNNNNNGTC	1 cut(s)	1140
AjnI	CCWGG	3 cut(s)	524, 833, 1960
AleI	CACNNNNGTG	1 cut(s)	342
Alw21I	GWGCWC	7 cut(s)	173, 349, 642, 684, 880, 1771, 2136
Alw26I	GTCTC	3 cut(s)	436, 1127, 2313
Alw44I	GTGCAC	2 cut(s)	680, 1767
AlwI	GGATC	3 cut(s)	1098, 1375, 1786
AlwNI	CAGNNNCTG	1 cut(s)	662
Aor13HI	TCCGGA	1 cut(s)	542
ApaLI	GTGCAC	2 cut(s)	680, 1767
ApeKI	GCWGC	7 cut(s)	309, 468, 590, 995, 1502, 1513, 1820
ApoI	RAATTY	2 cut(s)	461, 838
Asp700I	GAANNNNTTC	2 cut(s)	620, 663
AspLEI	GCGC	6 cut(s)	152, 246, 935, 1308, 1513, 1577
AspS9I	GGNCC	5 cut(s)	37, 528, 601, 1195, 1608
AsuC2I	CCSGG	1 cut(s)	1039
AsuHPI	GGTGA	6 cut(s)	374, 514, 599, 1057, 1367, 1919
AsuNHI	GCTAGC	1 cut(s)	2170
AvaII	GGWCC	3 cut(s)	528, 1195, 1608
BaeGI	GKGCMC	2 cut(s)	684, 1771
BalI	TGGCCA	1 cut(s)	1811
BanII	GRGCYC	5 cut(s)	58, 173, 235, 880, 1749
Bbv12I	GWGCWC	7 cut(s)	173, 349, 642, 684, 880, 1771, 2136
BbvI	GCAGC	7 cut(s)	296, 455, 577, 982, 1489, 1500, 1832
BccI	CCATC	7 cut(s)	189, 612, 1427, 1889, 2031, 2163, 2342
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	4 cut(s)	499, 533, 1292, 1326
BciT130I	CCWGG	3 cut(s)	526, 835, 1962
BciVI	GTATCC	1 cut(s)	539
BclI	TGATCA	2 cut(s)	1335, 1660
BcnI	CCSGG	1 cut(s)	1039
BcoDI	GTCTC	3 cut(s)	436, 1127, 2313
BfaI	CTAG	4 cut(s)	41, 1944, 2171, 2177
BfmI	CTRYAG	3 cut(s)	1503, 1514, 1755
BfoI	RGCGCY	1 cut(s)	1309
BfuAI	ACCTGC	2 cut(s)	213, 667
BfuI	GTATCC	1 cut(s)	539
BglII	AGATCT	1 cut(s)	2290
BisI	GCNGC	9 cut(s)	247, 310, 469, 591, 654, 996, 1503, 1514, 1821
BlsI	GCNGC	9 cut(s)	248, 311, 470, 592, 655, 997, 1504, 1515, 1822
Bme1390I	CCNGG	4 cut(s)	526, 835, 1039, 1962
Bme18I	GGWCC	3 cut(s)	528, 1195, 1608
BmeRI	GACNNNNNGTC	1 cut(s)	1140
BmgT120I	GGNCC	5 cut(s)	37, 528, 601, 1195, 1608
BmiI	GGNNCC	9 cut(s)	57, 232, 1196, 1197, 1405, 1609, 1746, 1845, 1959
BmrFI	CCNGG	4 cut(s)	526, 835, 1039, 1962
BmsI	GCATC	5 cut(s)	120, 700, 778, 1498, 2294
BmtI	GCTAGC	1 cut(s)	2174
BoxI	GACNNNNGTC	1 cut(s)	922
BplI	GAGNNNNNCTC	6 cut(s)	251, 283, 1196, 1228, 1991, 2023
BpmI	CTGGAG	3 cut(s)	1233, 1830, 2031
BpuEI	CTTGAG	6 cut(s)	187, 864, 941, 1314, 1460, 1652
BpuMI	CCSGG	1 cut(s)	1039
BsaHI	GRCGYC	1 cut(s)	2020
BsaJI	CCNNGG	4 cut(s)	810, 1314, 1740, 1774
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	3 cut(s)	1204, 1315, 1395
Bse118I	RCCGGY	1 cut(s)	672
Bse1I	ACTGG	3 cut(s)	1599, 2067, 2378
Bse3DI	GCAATG	1 cut(s)	600
BseAI	TCCGGA	1 cut(s)	542
BseBI	CCWGG	3 cut(s)	526, 835, 1962
BseDI	CCNNGG	4 cut(s)	810, 1314, 1740, 1774
BseGI	GGATG	4 cut(s)	181, 303, 1108, 2023
BseLI	CCNNNNNNNGG	3 cut(s)	1204, 1315, 1395
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	4 cut(s)	655, 958, 1122, 1707
BseNI	ACTGG	3 cut(s)	1599, 2067, 2378
BseRI	GAGGAG	2 cut(s)	1996, 2156
BseSI	GKGCMC	2 cut(s)	684, 1771
BseXI	GCAGC	7 cut(s)	296, 455, 577, 982, 1489, 1500, 1832
BseYI	CCCAGC	6 cut(s)	34, 194, 506, 1188, 1233, 1343
Bsh1236I	CGCG	5 cut(s)	150, 152, 244, 246, 933
BsiHKAI	GWGCWC	7 cut(s)	173, 349, 642, 684, 880, 1771, 2136
BsiSI	CCGG	3 cut(s)	543, 673, 1038
BslFI	GGGAC	3 cut(s)	1208, 1250, 1621
BslI	CCNNNNNNNGG	3 cut(s)	1204, 1315, 1395
BsmAI	GTCTC	3 cut(s)	436, 1127, 2313
BsmBI	CGTCTC	1 cut(s)	436
BsmFI	GGGAC	3 cut(s)	1208, 1250, 1621
BsmI	GAATGC	1 cut(s)	1740
Bsp13I	TCCGGA	1 cut(s)	542
Bsp1407I	TGTACA	2 cut(s)	747, 1867
Bsp143I	GATC	6 cut(s)	1090, 1335, 1380, 1660, 1778, 2290
Bsp19I	CCATGG	2 cut(s)	810, 1740
BspCNI	CTCAG	4 cut(s)	654, 957, 1123, 1708
BspEI	TCCGGA	1 cut(s)	542
BspFNI	CGCG	5 cut(s)	150, 152, 244, 246, 933
BspHI	TCATGA	1 cut(s)	2274
BspLI	GGNNCC	9 cut(s)	57, 232, 1196, 1197, 1405, 1609, 1746, 1845, 1959
BspMAI	CTGCAG	2 cut(s)	1507, 1518
BspMI	ACCTGC	2 cut(s)	213, 667
BspOI	GCTAGC	1 cut(s)	2174
BspPI	GGATC	3 cut(s)	1098, 1375, 1786
BspQI	GCTCTTC	2 cut(s)	1130, 2113
BsrBI	CCGCTC	2 cut(s)	19, 533
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	672
BsrGI	TGTACA	2 cut(s)	747, 1867
BsrI	ACTGG	3 cut(s)	1599, 2067, 2378
BssAI	RCCGGY	1 cut(s)	672
BssECI	CCNNGG	4 cut(s)	810, 1314, 1740, 1774
BssMI	GATC	6 cut(s)	1090, 1335, 1380, 1660, 1778, 2290
BssNAI	GTATAC	1 cut(s)	1260
BssNI	GRCGYC	1 cut(s)	2020
BssT1I	CCWWGG	3 cut(s)	810, 1740, 1774
Bst1107I	GTATAC	1 cut(s)	1260
Bst2UI	CCWGG	3 cut(s)	526, 835, 1962
Bst4CI	ACNGT	6 cut(s)	664, 1363, 1806, 2073, 2162, 2213
Bst6I	CTCTTC	7 cut(s)	278, 338, 384, 431, 1130, 1197, 2113
BstACI	GRCGYC	1 cut(s)	2020
BstAPI	GCANNNNNTGC	1 cut(s)	1295
BstAUI	TGTACA	2 cut(s)	747, 1867
BstDEI	CTNAG	7 cut(s)	472, 641, 706, 944, 999, 1131, 1716
BstDSI	CCRYGG	2 cut(s)	810, 1740
BstEII	GGTNACC	1 cut(s)	1063
BstF5I	GGATG	4 cut(s)	181, 303, 1108, 2023
BstFNI	CGCG	5 cut(s)	150, 152, 244, 246, 933
BstH2I	RGCGCY	1 cut(s)	1309
BstHHI	GCGC	6 cut(s)	152, 246, 935, 1308, 1513, 1577
BstKTI	GATC	6 cut(s)	1093, 1338, 1383, 1663, 1781, 2293
BstMAI	GTCTC	3 cut(s)	436, 1127, 2313
BstMBI	GATC	6 cut(s)	1090, 1335, 1380, 1660, 1778, 2290
BstMWI	GCNNNNNNNGC	6 cut(s)	599, 1295, 1508, 1581, 1744, 1817
BstNI	CCWGG	3 cut(s)	526, 835, 1962
BstNSI	RCATGY	3 cut(s)	345, 394, 454
BstPAI	GACNNNNGTC	1 cut(s)	922
BstPI	GGTNACC	1 cut(s)	1063
BstSCI	CCNGG	4 cut(s)	524, 833, 1037, 1960
BstSFI	CTRYAG	3 cut(s)	1503, 1514, 1755
BstSLI	GKGCMC	2 cut(s)	684, 1771
BstUI	CGCG	5 cut(s)	150, 152, 244, 246, 933
BstV1I	GCAGC	7 cut(s)	296, 455, 577, 982, 1489, 1500, 1832
BstX2I	RGATCY	2 cut(s)	1090, 2290
BstYI	RGATCY	2 cut(s)	1090, 2290
BstZ17I	GTATAC	1 cut(s)	1260
BsuI	GTATCC	1 cut(s)	539
BtgI	CCRYGG	2 cut(s)	810, 1740
BtsCI	GGATG	4 cut(s)	181, 303, 1108, 2023
BtsIMutI	CAGTG	3 cut(s)	866, 2167, 2209
BveI	ACCTGC	2 cut(s)	213, 667
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	1 cut(s)	2274
CfoI	GCGC	6 cut(s)	152, 246, 935, 1308, 1513, 1577
Cfr10I	RCCGGY	1 cut(s)	672
Cfr13I	GGNCC	5 cut(s)	37, 528, 601, 1195, 1608
CseI	GACGC	1 cut(s)	2028
CsiI	ACCWGGT	1 cut(s)	1960
Csp6I	GTAC	5 cut(s)	454, 748, 1492, 1868, 2152
CviQI	GTAC	5 cut(s)	454, 748, 1492, 1868, 2152
DdeI	CTNAG	7 cut(s)	472, 641, 706, 944, 999, 1131, 1716
DpnI	GATC	6 cut(s)	1092, 1337, 1382, 1662, 1780, 2292
DpnII	GATC	6 cut(s)	1090, 1335, 1380, 1660, 1778, 2290
DraI	TTTAAA	1 cut(s)	67
DraIII	CACNNNGTG	2 cut(s)	557, 2122
DrdI	GACNNNNNNGTC	1 cut(s)	428
DriI	GACNNNNNGTC	1 cut(s)	1140
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	4 cut(s)	220, 247, 670, 1809
Eam1104I	CTCTTC	7 cut(s)	278, 338, 384, 431, 1130, 1197, 2113
Eam1105I	GACNNNNNGTC	1 cut(s)	1140
EarI	CTCTTC	7 cut(s)	278, 338, 384, 431, 1130, 1197, 2113
Ecl136II	GAGCTC	2 cut(s)	171, 878
Eco130I	CCWWGG	3 cut(s)	810, 1740, 1774
Eco147I	AGGCCT	1 cut(s)	372
Eco24I	GRGCYC	5 cut(s)	58, 173, 235, 880, 1749
Eco47I	GGWCC	3 cut(s)	528, 1195, 1608
Eco53kI	GAGCTC	2 cut(s)	171, 878
Eco57I	CTGAAG	2 cut(s)	1221, 1853
Eco91I	GGTNACC	1 cut(s)	1063
EcoICRI	GAGCTC	2 cut(s)	171, 878
EcoO109I	RGGNCCY	1 cut(s)	1195
EcoO65I	GGTNACC	1 cut(s)	1063
EcoRI	GAATTC	1 cut(s)	838
EcoRII	CCWGG	3 cut(s)	524, 833, 1960
EcoT14I	CCWWGG	3 cut(s)	810, 1740, 1774
EcoT22I	ATGCAT	1 cut(s)	793
EcoT38I	GRGCYC	5 cut(s)	58, 173, 235, 880, 1749
ErhI	CCWWGG	3 cut(s)	810, 1740, 1774
Esp3I	CGTCTC	1 cut(s)	436
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	3 cut(s)	1208, 1250, 1621
FauI	CCCGC	3 cut(s)	491, 844, 1185
FauNDI	CATATG	1 cut(s)	2354
FbaI	TGATCA	2 cut(s)	1335, 1660
FblI	GTMKAC	2 cut(s)	778, 1259
Fnu4HI	GCNGC	9 cut(s)	247, 310, 469, 591, 654, 996, 1503, 1514, 1821
FokI	GGATG	4 cut(s)	168, 290, 1115, 2010
FriOI	GRGCYC	5 cut(s)	58, 173, 235, 880, 1749
Fsp4HI	GCNGC	9 cut(s)	247, 310, 469, 591, 654, 996, 1503, 1514, 1821
FspBI	CTAG	4 cut(s)	41, 1944, 2171, 2177
GlaI	GCGC	6 cut(s)	151, 245, 934, 1307, 1512, 1576
GluI	GCNGC	9 cut(s)	247, 310, 469, 591, 654, 996, 1503, 1514, 1821
GsaI	CCCAGC	6 cut(s)	38, 198, 510, 1192, 1237, 1347
GsuI	CTGGAG	3 cut(s)	1233, 1830, 2031
HaeII	RGCGCY	1 cut(s)	1309
HapII	CCGG	3 cut(s)	543, 673, 1038
HgaI	GACGC	1 cut(s)	2028
HhaI	GCGC	6 cut(s)	152, 246, 935, 1308, 1513, 1577
Hin1I	GRCGYC	1 cut(s)	2020
Hin6I	GCGC	6 cut(s)	150, 244, 933, 1306, 1511, 1575
HinP1I	GCGC	6 cut(s)	150, 244, 933, 1306, 1511, 1575
HincII	GTYRAC	2 cut(s)	779, 1681
HindII	GTYRAC	2 cut(s)	779, 1681
HindIII	AAGCTT	3 cut(s)	1080, 1281, 1721
HinfI	GANTC	9 cut(s)	815, 823, 923, 1547, 1614, 1622, 1751, 2035, 2321
HpaII	CCGG	3 cut(s)	543, 673, 1038
HphI	GGTGA	6 cut(s)	374, 514, 599, 1057, 1367, 1919
Hpy166II	GTNNAC	8 cut(s)	682, 779, 804, 869, 1260, 1681, 1769, 2207
Hpy188I	TCNGA	7 cut(s)	365, 928, 1090, 1132, 1894, 2249, 2290
Hpy8I	GTNNAC	8 cut(s)	682, 779, 804, 869, 1260, 1681, 1769, 2207
Hpy99I	CGWCG	1 cut(s)	2022
HpyAV	CCTTC	4 cut(s)	790, 1598, 1828, 1921
HpyCH4III	ACNGT	6 cut(s)	664, 1363, 1806, 2073, 2162, 2213
HpyCH4IV	ACGT	1 cut(s)	723
HpyF10VI	GCNNNNNNNGC	6 cut(s)	599, 1295, 1508, 1581, 1744, 1817
HpyF3I	CTNAG	7 cut(s)	472, 641, 706, 944, 999, 1131, 1716
HpySE526I	ACGT	1 cut(s)	723
Hsp92I	GRCGYC	1 cut(s)	2020
HspAI	GCGC	6 cut(s)	150, 244, 933, 1306, 1511, 1575
KflI	GGGWCCC	1 cut(s)	1195
Kpn2I	TCCGGA	1 cut(s)	542
KroI	GCCGGC	1 cut(s)	672
KroNI	GCCGGC	1 cut(s)	674
Ksp22I	TGATCA	2 cut(s)	1335, 1660
Kzo9I	GATC	6 cut(s)	1090, 1335, 1380, 1660, 1778, 2290
LguI	GCTCTTC	2 cut(s)	1130, 2113
LmnI	GCTCC	7 cut(s)	61, 230, 875, 1409, 1744, 1849, 2143
Lsp1109I	GCAGC	7 cut(s)	296, 455, 577, 982, 1489, 1500, 1832
LweI	GCATC	5 cut(s)	120, 700, 778, 1498, 2294
MabI	ACCWGGT	1 cut(s)	1960
MaeI	CTAG	4 cut(s)	41, 1944, 2171, 2177
MaeII	ACGT	1 cut(s)	723
MaeIII	GTNAC	6 cut(s)	520, 1007, 1063, 1115, 1355, 1898
MalI	GATC	6 cut(s)	1092, 1337, 1382, 1662, 1780, 2292
MbiI	CCGCTC	2 cut(s)	19, 533
MboI	GATC	6 cut(s)	1090, 1335, 1380, 1660, 1778, 2290
MfeI	CAATTG	1 cut(s)	571
MflI	RGATCY	2 cut(s)	1090, 2290
MlsI	TGGCCA	1 cut(s)	1811
MluNI	TGGCCA	1 cut(s)	1811
MlyI	GAGTC	3 cut(s)	932, 1616, 2315
MmeI	TCCRAC	4 cut(s)	310, 388, 459, 2047
Mox20I	TGGCCA	1 cut(s)	1811
Mph1103I	ATGCAT	1 cut(s)	793
MroI	TCCGGA	1 cut(s)	542
MroNI	GCCGGC	1 cut(s)	672
MroXI	GAANNNNTTC	2 cut(s)	620, 663
MscI	TGGCCA	1 cut(s)	1811
MseI	TTAA	6 cut(s)	66, 89, 1077, 1244, 1440, 1967
MslI	CAYNNNNRTG	6 cut(s)	342, 449, 743, 786, 1389, 2160
Msp20I	TGGCCA	1 cut(s)	1811
MspA1I	CMGCKG	3 cut(s)	309, 1192, 1823
MspI	CCGG	3 cut(s)	543, 673, 1038
MspR9I	CCNGG	4 cut(s)	526, 835, 1039, 1962
MunI	CAATTG	1 cut(s)	571
Mva1269I	GAATGC	1 cut(s)	1740
MvaI	CCWGG	3 cut(s)	526, 835, 1962
MvnI	CGCG	5 cut(s)	150, 152, 244, 246, 933
MwoI	GCNNNNNNNGC	6 cut(s)	599, 1295, 1508, 1581, 1744, 1817
NaeI	GCCGGC	1 cut(s)	674
NciI	CCSGG	1 cut(s)	1039
NcoI	CCATGG	2 cut(s)	810, 1740
NdeI	CATATG	1 cut(s)	2354
NdeII	GATC	6 cut(s)	1090, 1335, 1380, 1660, 1778, 2290
NgoMIV	GCCGGC	1 cut(s)	672
NheI	GCTAGC	1 cut(s)	2170
NlaIV	GGNNCC	9 cut(s)	57, 232, 1196, 1197, 1405, 1609, 1746, 1845, 1959
NmeAIII	GCCGAG	2 cut(s)	198, 1295
NmuCI	GTSAC	3 cut(s)	520, 1063, 1355
NsiI	ATGCAT	1 cut(s)	793
NspI	RCATGY	3 cut(s)	345, 394, 454
OliI	CACNNNNGTG	1 cut(s)	342
PagI	TCATGA	1 cut(s)	2274
PaqCI	CACCTGC	1 cut(s)	667
PceI	AGGCCT	1 cut(s)	372
PciI	ACATGT	1 cut(s)	450
PciSI	GCTCTTC	2 cut(s)	1130, 2113
PcsI	WCGNNNNNNNCGW	2 cut(s)	154, 1699
PctI	GAATGC	1 cut(s)	1740
PdiI	GCCGGC	1 cut(s)	674
PdmI	GAANNNNTTC	2 cut(s)	620, 663
PfeI	GAWTC	6 cut(s)	815, 823, 1547, 1614, 1751, 2035
PflFI	GACNNNGTC	1 cut(s)	1361
PfoI	TCCNGGA	1 cut(s)	833
PkrI	GCNGC	9 cut(s)	248, 311, 470, 592, 655, 997, 1504, 1515, 1822
PleI	GAGTC	3 cut(s)	931, 1616, 2315
PpsI	GAGTC	3 cut(s)	931, 1616, 2315
PpuMI	RGGWCCY	1 cut(s)	1195
PscI	ACATGT	1 cut(s)	450
PshAI	GACNNNNGTC	1 cut(s)	922
PsiI	TTATAA	1 cut(s)	2042
Psp124BI	GAGCTC	2 cut(s)	173, 880
Psp5II	RGGWCCY	1 cut(s)	1195
Psp6I	CCWGG	3 cut(s)	524, 833, 1960
PspEI	GGTNACC	1 cut(s)	1063
PspFI	CCCAGC	6 cut(s)	34, 194, 506, 1188, 1233, 1343
PspGI	CCWGG	3 cut(s)	524, 833, 1960
PspN4I	GGNNCC	9 cut(s)	57, 232, 1196, 1197, 1405, 1609, 1746, 1845, 1959
PspPI	GGNCC	5 cut(s)	37, 528, 601, 1195, 1608
PspPPI	RGGWCCY	1 cut(s)	1195
PstI	CTGCAG	2 cut(s)	1507, 1518
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	2 cut(s)	1090, 2290
PsyI	GACNNNGTC	1 cut(s)	1361
PvuII	CAGCTG	1 cut(s)	1823
RsaI	GTAC	5 cut(s)	455, 749, 1493, 1869, 2153
RsaNI	GTAC	5 cut(s)	454, 748, 1492, 1868, 2152
RseI	CAYNNNNRTG	6 cut(s)	342, 449, 743, 786, 1389, 2160
SacI	GAGCTC	2 cut(s)	173, 880
SalI	GTCGAC	1 cut(s)	777
SapI	GCTCTTC	2 cut(s)	1130, 2113
SaqAI	TTAA	6 cut(s)	66, 89, 1077, 1244, 1440, 1967
SatI	GCNGC	9 cut(s)	247, 310, 469, 591, 654, 996, 1503, 1514, 1821
Sau3AI	GATC	6 cut(s)	1090, 1335, 1380, 1660, 1778, 2290
Sau96I	GGNCC	5 cut(s)	37, 528, 601, 1195, 1608
SchI	GAGTC	3 cut(s)	932, 1616, 2315
ScrFI	CCNGG	4 cut(s)	526, 835, 1039, 1962
SexAI	ACCWGGT	1 cut(s)	1960
SfaNI	GCATC	5 cut(s)	120, 700, 778, 1498, 2294
SfcI	CTRYAG	3 cut(s)	1503, 1514, 1755
SinI	GGWCC	3 cut(s)	528, 1195, 1608
SmiMI	CAYNNNNRTG	6 cut(s)	342, 449, 743, 786, 1389, 2160
SmlI	CTYRAG	6 cut(s)	166, 879, 920, 1329, 1475, 1631
SmoI	CTYRAG	6 cut(s)	166, 879, 920, 1329, 1475, 1631
SseBI	AGGCCT	1 cut(s)	372
SspI	AATATT	1 cut(s)	1182
SspMI	CTAG	4 cut(s)	41, 1944, 2171, 2177
SstI	GAGCTC	2 cut(s)	173, 880
StuI	AGGCCT	1 cut(s)	372
StyD4I	CCNGG	4 cut(s)	524, 833, 1037, 1960
StyI	CCWWGG	3 cut(s)	810, 1740, 1774
TaaI	ACNGT	6 cut(s)	664, 1363, 1806, 2073, 2162, 2213
TaiI	ACGT	1 cut(s)	726
TaqI	TCGA	4 cut(s)	495, 778, 1418, 1693
TatI	WGTACW	3 cut(s)	453, 747, 1867
TauI	GCSGC	2 cut(s)	249, 656
TfiI	GAWTC	6 cut(s)	815, 823, 1547, 1614, 1751, 2035
Tru1I	TTAA	6 cut(s)	66, 89, 1077, 1244, 1440, 1967
Tru9I	TTAA	6 cut(s)	66, 89, 1077, 1244, 1440, 1967
TscAI	CASTG	3 cut(s)	866, 2167, 2216
TseFI	GTSAC	3 cut(s)	520, 1063, 1355
TseI	GCWGC	7 cut(s)	309, 468, 590, 995, 1502, 1513, 1820
Tsp45I	GTSAC	3 cut(s)	520, 1063, 1355
TspGWI	ACGGA	5 cut(s)	94, 117, 930, 1436, 1509
TspRI	CASTG	3 cut(s)	866, 2167, 2216
Tth111I	GACNNNGTC	1 cut(s)	1361
VneI	GTGCAC	2 cut(s)	680, 1767
VpaK11BI	GGWCC	3 cut(s)	528, 1195, 1608
XapI	RAATTY	2 cut(s)	461, 838
XbaI	TCTAGA	1 cut(s)	1943
XceI	RCATGY	3 cut(s)	345, 394, 454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2345
XmiI	GTMKAC	2 cut(s)	778, 1259
XmnI	GAANNNNTTC	2 cut(s)	620, 663
XspI	CTAG	4 cut(s)	41, 1944, 2171, 2177
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.