Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

66720159 .. 66723293

Gene Structure 3135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCTCAAGGCTTATGCCTTGTATGGACAAGCTGCAGTTGCCTTGCATGGACAAGCTGCAGAGGCAGTGCAGCTTTTTTCACAAATGAACATTAAACCTGATTCTGCTACCTTTGTTTCTCTCCTCTGTGCTTGTAGTCATGCTGGACTGGTCGAAGAAGGAACCAGAATCTTTGACTCCATGCTTGAGAGATATGAAATTGTACCTCTATGTGATCATTATGCATGCATGGTTGACATTCTTGGTCGAGCAGGACGAGTTGGTGAGGCTGAGAAGCTTGTGAGTAGAATGCCAATGAAGCCCGATTCCGTGGTTTGGAGTGCACTCCTTGGATCGTGTAGGAAGCATGGAAATACACAGTTGGCCAAGTTAGCAGCTGATAGACTGAAGGAGTTGGCTCCAGAGGATACAACCTCATCCTTGCATGATGTGGAAGAGGAGCACAAAGAGGAGCAGCTGTACCATCATTGTGAGAAGCTAGCCTTAGTGTTTGCTATTATGAATGAAAGCAGTTTACATTGTGGTAGGACTGCTGTAAAAATAATGAAGAATATCAGAGTATGCGTGGATTGCCATAACTTCATGAAGTTAGCATCAAATCTACTTCAAAAGGATATTGTTGTGAGAGACTCAAACCGCTTCCACCACTTTAAAGATGGCATATGTTCTTGCAATGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

229

Amino Acids

25.53

Weight (kDa)

6.3

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	136 - 228	2.8e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	637
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	204, 461
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	608
AluBI	AGCT	7 cut(s)	32, 56, 73, 277, 377, 457, 478
AluI	AGCT	7 cut(s)	32, 56, 73, 277, 377, 457, 478
Alw21I	GWGCWC	2 cut(s)	325, 444
Alw26I	GTCTC	1 cut(s)	621
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	363
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	5 cut(s)	32, 56, 70, 374, 454
AsuHPI	GGTGA	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	365
Bbv12I	GWGCWC	2 cut(s)	325, 444
BbvI	GCAGC	5 cut(s)	19, 43, 82, 386, 466
BccI	CCATC	2 cut(s)	471, 650
BciVI	GTATCC	1 cut(s)	400
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	33, 57
BfuI	GTATCC	1 cut(s)	400
BisI	GCNGC	5 cut(s)	33, 57, 71, 375, 455
BlsI	GCNGC	5 cut(s)	34, 58, 72, 376, 456
BmiI	GGNNCC	2 cut(s)	163, 399
BmsI	GCATC	1 cut(s)	602
BmtI	GCTAGC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	309, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	2 cut(s)	153, 686
Bse3DI	GCAATG	1 cut(s)	679
BseDI	CCNNGG	2 cut(s)	309, 328
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	153, 686
BseRI	GAGGAG	3 cut(s)	113, 452, 464
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	5 cut(s)	19, 43, 82, 386, 466
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	365
BsiHKAI	GWGCWC	2 cut(s)	325, 444
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	621
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	325, 444
Bsp143I	GATC	2 cut(s)	214, 332
BspACI	CCGC	1 cut(s)	637
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	582
BspLI	GGNNCC	2 cut(s)	163, 399
BspMAI	CTGCAG	2 cut(s)	37, 61
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	679
BsrI	ACTGG	2 cut(s)	153, 686
BssECI	CCNNGG	2 cut(s)	309, 328
BssMI	GATC	2 cut(s)	214, 332
BssT1I	CCWWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	226, 480
BstDEI	CTNAG	2 cut(s)	270, 484
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	2 cut(s)	217, 335
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	2 cut(s)	214, 332
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 62, 298, 371, 570
BstNSI	RCATGY	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	33, 57
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	5 cut(s)	19, 43, 82, 386, 466
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	226, 480
CciI	TCATGA	1 cut(s)	582
Csp6I	GTAC	2 cut(s)	203, 460
CviAII	CATG	8 cut(s)	47, 140, 181, 225, 229, 347, 425, 583
CviQI	GTAC	2 cut(s)	203, 460
DdeI	CTNAG	2 cut(s)	270, 484
DpnI	GATC	2 cut(s)	216, 334
DpnII	GATC	2 cut(s)	214, 332
DraI	TTTAAA	1 cut(s)	652
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	328
EcoT22I	ATGCAT	2 cut(s)	226, 230
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	8 cut(s)	50, 143, 184, 228, 232, 350, 428, 586
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FatI	CATG	8 cut(s)	46, 139, 180, 224, 228, 346, 424, 582
FauNDI	CATATG	1 cut(s)	662
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	5 cut(s)	33, 57, 71, 375, 455
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	5 cut(s)	33, 57, 71, 375, 455
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	5 cut(s)	33, 57, 71, 375, 455
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	365
Hin1II	CATG	8 cut(s)	50, 143, 184, 228, 232, 350, 428, 586
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	5 cut(s)	101, 168, 176, 305, 629
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	3 cut(s)	235, 323, 515
Hpy188I	TCNGA	1 cut(s)	557
Hpy188III	TCNNGA	2 cut(s)	401, 583
Hpy8I	GTNNAC	3 cut(s)	235, 323, 515
HpyAV	CCTTC	2 cut(s)	152, 382
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	9 cut(s)	35, 46, 59, 70, 224, 228, 323, 424, 672
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 62, 298, 371, 570
HpyF3I	CTNAG	2 cut(s)	270, 484
Hsp92II	CATG	8 cut(s)	50, 143, 184, 228, 232, 350, 428, 586
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	214, 332
LmnI	GCTCC	3 cut(s)	403, 439, 451
LpnPI	CCDG	7 cut(s)	111, 129, 134, 178, 237, 414, 667
Lsp1109I	GCAGC	5 cut(s)	19, 43, 82, 386, 466
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	1 cut(s)	479
MalI	GATC	2 cut(s)	216, 334
MboI	GATC	2 cut(s)	214, 332
MboII	GAAGA	3 cut(s)	167, 446, 559
MhlI	GDGCHC	2 cut(s)	325, 444
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	1 cut(s)	198
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	2 cut(s)	170, 623
MnlI	CCTC	8 cut(s)	55, 134, 216, 259, 397, 424, 430, 442
Mox20I	TGGCCA	1 cut(s)	365
Mph1103I	ATGCAT	2 cut(s)	226, 230
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	2 cut(s)	93, 651
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	377, 457
Mva1269I	GAATGC	1 cut(s)	294
MwoI	GCNNNNNNNGC	5 cut(s)	38, 62, 298, 371, 570
NdeI	CATATG	1 cut(s)	662
NdeII	GATC	2 cut(s)	214, 332
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	8 cut(s)	50, 143, 184, 228, 232, 350, 428, 586
NlaIV	GGNNCC	2 cut(s)	163, 399
NsiI	ATGCAT	2 cut(s)	226, 230
NspI	RCATGY	1 cut(s)	228
PaeI	GCATGC	1 cut(s)	228
PagI	TCATGA	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PctI	GAATGC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	101, 168, 305
PkrI	GCNGC	5 cut(s)	34, 58, 72, 376, 456
PleI	GAGTC	2 cut(s)	170, 623
PpsI	GAGTC	2 cut(s)	170, 623
PspN4I	GGNNCC	2 cut(s)	163, 399
PstI	CTGCAG	2 cut(s)	37, 61
PvuII	CAGCTG	2 cut(s)	377, 457
RsaI	GTAC	2 cut(s)	204, 461
RsaNI	GTAC	2 cut(s)	203, 460
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	93, 651
SatI	GCNGC	5 cut(s)	33, 57, 71, 375, 455
Sau3AI	GATC	2 cut(s)	214, 332
SchI	GAGTC	2 cut(s)	170, 623
SduI	GDGCHC	2 cut(s)	325, 444
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	2 cut(s)	33, 57
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	5, 185
SmoI	CTYRAG	2 cut(s)	5, 185
SphI	GCATGC	1 cut(s)	228
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	1 cut(s)	637
SspMI	CTAG	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	153, 247
TasI	AATT	1 cut(s)	198
TfiI	GAWTC	3 cut(s)	101, 168, 305
Tru1I	TTAA	2 cut(s)	93, 651
Tru9I	TTAA	2 cut(s)	93, 651
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	5 cut(s)	32, 56, 70, 374, 454
TspDTI	ATGAA	8 cut(s)	101, 210, 311, 515, 519, 560, 571, 599
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	321
XceI	RCATGY	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XspI	CTAG	1 cut(s)	479
Zsp2I	ATGCAT	2 cut(s)	226, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.