Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

67963759 .. 67980658

Gene Structure 16900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0498000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGAGTTGGAGAGCATAGTGGCATACCTACGTAATAAGACCATTTTGATAACTGGAGCCACTGGTTTCCTTGGAATGGTACTCGTAGAGAAAATTTTGAGGGTTCAACCCGACGTCAAGAGGCTTTACCTTCTTGTAAGAGCAACTGATGCTGAATCTGCTGCATATCGAATGAAGAATGAGATCTTAGGGAAGGAGTTGTTCAAGGTTCTGAAAGAAACATGGGGTGAAGATTTTGACTCCTTTATATCTCAAAAAGTCGTTGCTATACCGGGAGACGTAAGTTTTGAAAACCTAGGAGTGAAGGATGTCATACTGATGGAAAATATGTGTACTGAGATACAAGTCATACTGAGTTCTGCAGCGAATACCAAGTTTGATGAGAGATATGATATATCCTTGAGCATCAATACATTTGGAGTTCTGCACATGTTGAGCTTTGTAAAGAAATGCCTAAAAATAGAGATGCTTCTCCACATATCAACTGCATATGTGTGTGGTGAAGAGGCCGGACTTATACTAGAAGACTCAACTTCAATGAATAAGAGGGTCAAGGAGATGAGCCTCCCTAATATTAATATAATAAAAAAGAACCTAGTGAATGAAAAATTGAATGACTTGAGAACACAAGATGCTTCAGAAGAAGTTATTACAAATACAATGAAGGATCTCGGCATTGAAAGGGCTAAACTACATGGATGGCCAAACACCTATGTATTTACAAAGGCGATGGGAGAAGTTCTCTTAAGTCATCACTCTAAAAACAATCTGCCTTTTGTCATTGTACGTCCAACTGTAGTTTCCAGCACATACAGTGAACCATTTCCAGGTTGGGTTCAAGGTTACAGAACTGTTGATAGCGTAATTGCTGGTTATTGTAAAGGAAAGCTGACATGCCTACATCTTGATCCTATGACAGTATGTGATATGATTCCTGTGGATATGGTGGTAAATTCAATGATAGCAGCGATCGTGGTGAATGCAAATAAATCATCCAACATCATTTACCATGTGGGAAGCTCACTAAGAAATCCAATAAAATTCAATGATATTCATAGTTTTGTAATGAAATACTTCACCAAATATCCATGGATTAACAAGGATGAAAAACCTGTCGTAGCGAGGAAGATCCGAATATTCAAGAGCATGGCTACTTTTCATATGTACATGAAAATTCGCTACTCACTTCCTTTGAAGGGATTAAAGTTGGTGAACAAAGTATCTGGCCGATGTTTCCAAGATATATATGTCATGTATAACCAGAAACTCAGATTGGTGATGCGCATGGTGGAGCTATACCGTCCCTATATGCTATTCAAGGGCATTTTTGACGACACCAACACAGAGGAGTTGCGAAAGATACAAGAGAAGGTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

459

Amino Acids

52.49

Weight (kDa)

9.08

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	17 - 320	2.4e-70	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
Acc16I	TGCGCA	1 cut(s)	1283
AclWI	GGATC	3 cut(s)	675, 902, 1123
AcoI	YGGCCR	2 cut(s)	701, 1225
AcsI	RAATTY	4 cut(s)	93, 952, 1040, 1173
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	4 cut(s)	81, 334, 786, 1166
AfiI	CCNNNNNNNGG	3 cut(s)	76, 827, 1196
AflII	CTTAAG	1 cut(s)	745
AflIII	ACRYGT	1 cut(s)	429
AjnI	CCWGG	1 cut(s)	826
AjuI	GAANNNNNNNTTGG	4 cut(s)	784, 816, 1256, 1288
AluBI	AGCT	4 cut(s)	438, 889, 1020, 1294
AluI	AGCT	4 cut(s)	438, 889, 1020, 1294
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	3 cut(s)	675, 902, 1123
AoxI	GGCC	3 cut(s)	507, 701, 1225
ApeKI	GCWGC	3 cut(s)	161, 362, 965
ApoI	RAATTY	4 cut(s)	93, 952, 1040, 1173
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	2 cut(s)	822, 1073
AspA2I	CCTAGG	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	1284
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	6 cut(s)	239, 512, 988, 1069, 1222, 1288
AvrII	CCTAGG	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	148, 374, 977
BccI	CCATC	3 cut(s)	313, 693, 724
BciT130I	CCWGG	1 cut(s)	828
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	3 cut(s)	296, 521, 596
BfmI	CTRYAG	2 cut(s)	360, 795
BfrI	CTTAAG	1 cut(s)	745
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	3 cut(s)	162, 363, 966
BlnI	CCTAGG	1 cut(s)	295
BlsI	GCNGC	3 cut(s)	163, 364, 967
Bme1390I	CCNGG	2 cut(s)	273, 828
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	273, 828
BmsI	GCATC	5 cut(s)	139, 414, 456, 622, 1269
BpiI	GAAGAC	1 cut(s)	531
BplI	GAGNNNNNCTC	2 cut(s)	726, 758
BpmI	CTGGAG	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	421, 640
BpuMI	CCSGG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	70, 295, 1088
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 827, 1196
Bse1I	ACTGG	2 cut(s)	58, 67
BseBI	CCWGG	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	70, 295, 1088
BseGI	GGATG	4 cut(s)	313, 704, 992, 1108
BseLI	CCNNNNNNNGG	3 cut(s)	76, 827, 1196
BseMII	CTCAG	3 cut(s)	327, 344, 1282
BseNI	ACTGG	2 cut(s)	58, 67
BseRI	GAGGAG	1 cut(s)	1361
BseXI	GCAGC	3 cut(s)	148, 374, 977
BsgI	GTGCAG	1 cut(s)	410
Bsh1285I	CGRYCG	1 cut(s)	972
BshFI	GGCC	3 cut(s)	509, 703, 1227
BsiEI	CGRYCG	1 cut(s)	972
BsiSI	CCGG	2 cut(s)	272, 510
BslFI	GGGAC	1 cut(s)	1287
BslI	CCNNNNNNNGG	3 cut(s)	76, 827, 1196
BsmAI	GTCTC	1 cut(s)	270
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	1287
BsmI	GAATGC	1 cut(s)	985
BsnI	GGCC	3 cut(s)	509, 703, 1227
Bsp1407I	TGTACA	1 cut(s)	1164
Bsp143I	GATC	5 cut(s)	183, 667, 907, 969, 1128
Bsp19I	CCATGG	1 cut(s)	1088
BspANI	GGCC	3 cut(s)	509, 703, 1227
BspCNI	CTCAG	3 cut(s)	328, 345, 1281
BspLI	GGNNCC	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	3 cut(s)	675, 902, 1123
BspTI	CTTAAG	1 cut(s)	745
BsrGI	TGTACA	1 cut(s)	1164
BsrI	ACTGG	2 cut(s)	58, 67
BssECI	CCNNGG	3 cut(s)	70, 295, 1088
BssMI	GATC	5 cut(s)	183, 667, 907, 969, 1128
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	3 cut(s)	70, 295, 1088
Bst2UI	CCWGG	1 cut(s)	828
Bst4CI	ACNGT	5 cut(s)	796, 815, 853, 919, 1301
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	745
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	1164
BstBAI	YACGTR	1 cut(s)	32
BstDEI	CTNAG	5 cut(s)	187, 336, 353, 1025, 1268
BstDSI	CCRYGG	1 cut(s)	1088
BstF5I	GGATG	4 cut(s)	313, 704, 992, 1108
BstHHI	GCGC	1 cut(s)	1284
BstKTI	GATC	5 cut(s)	186, 670, 910, 972, 1131
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	5 cut(s)	183, 667, 907, 969, 1128
BstMCI	CGRYCG	1 cut(s)	972
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstNI	CCWGG	1 cut(s)	828
BstNSI	RCATGY	2 cut(s)	433, 897
BstSCI	CCNGG	2 cut(s)	271, 826
BstSFI	CTRYAG	2 cut(s)	360, 795
BstSNI	TACGTA	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	148, 374, 977
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	3 cut(s)	183, 667, 1128
BstYI	RGATCY	3 cut(s)	183, 667, 1128
BsuRI	GGCC	3 cut(s)	509, 703, 1227
BtgI	CCRYGG	1 cut(s)	1088
BtgZI	GCGATG	1 cut(s)	743
BtsCI	GGATG	4 cut(s)	313, 704, 992, 1108
BtsIMutI	CAGTG	2 cut(s)	60, 820
CfoI	GCGC	1 cut(s)	1284
Csp6I	GTAC	4 cut(s)	80, 333, 785, 1165
CviQI	GTAC	4 cut(s)	80, 333, 785, 1165
DdeI	CTNAG	5 cut(s)	187, 336, 353, 1025, 1268
DpnI	GATC	5 cut(s)	185, 669, 909, 971, 1130
DpnII	GATC	5 cut(s)	183, 667, 907, 969, 1128
EaeI	YGGCCR	2 cut(s)	701, 1225
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco105I	TACGTA	1 cut(s)	32
Eco130I	CCWWGG	3 cut(s)	70, 295, 1088
Eco57I	CTGAAG	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	826
EcoT14I	CCWWGG	3 cut(s)	70, 295, 1088
ErhI	CCWWGG	3 cut(s)	70, 295, 1088
Esp3I	CGTCTC	1 cut(s)	270
FaqI	GGGAC	1 cut(s)	1287
FauNDI	CATATG	2 cut(s)	490, 1161
Fnu4HI	GCNGC	3 cut(s)	162, 363, 966
FokI	GGATG	4 cut(s)	320, 711, 979, 1115
Fsp4HI	GCNGC	3 cut(s)	162, 363, 966
FspAI	RTGCGCAY	1 cut(s)	1283
FspBI	CTAG	3 cut(s)	296, 521, 596
FspI	TGCGCA	1 cut(s)	1283
GlaI	GCGC	1 cut(s)	1283
GluI	GCNGC	3 cut(s)	162, 363, 966
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	509, 703, 1227
HapII	CCGG	2 cut(s)	272, 510
HhaI	GCGC	1 cut(s)	1284
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	1282
HinP1I	GCGC	1 cut(s)	1282
HinfI	GANTC	4 cut(s)	155, 239, 527, 931
HpaII	CCGG	2 cut(s)	272, 510
HphI	GGTGA	6 cut(s)	239, 512, 988, 1069, 1222, 1288
Hpy166II	GTNNAC	3 cut(s)	333, 818, 1213
Hpy188I	TCNGA	4 cut(s)	213, 640, 1133, 1271
Hpy188III	TCNNGA	3 cut(s)	118, 905, 1141
Hpy8I	GTNNAC	3 cut(s)	333, 818, 1213
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	6 cut(s)	140, 187, 298, 658, 1189, 1363
HpyCH4III	ACNGT	5 cut(s)	796, 815, 853, 919, 1301
HpyCH4IV	ACGT	4 cut(s)	31, 114, 279, 787
HpyCH4V	TGCA	5 cut(s)	164, 362, 427, 488, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	5 cut(s)	187, 336, 353, 1025, 1268
HpySE526I	ACGT	4 cut(s)	31, 114, 279, 787
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	1 cut(s)	1282
Kzo9I	GATC	5 cut(s)	183, 667, 907, 969, 1128
LmnI	GCTCC	2 cut(s)	56, 1291
Lsp1109I	GCAGC	3 cut(s)	148, 374, 977
LweI	GCATC	5 cut(s)	139, 414, 456, 622, 1269
MaeI	CTAG	3 cut(s)	296, 521, 596
MaeII	ACGT	4 cut(s)	31, 114, 279, 787
MaeIII	GTNAC	2 cut(s)	842, 1372
MalI	GATC	5 cut(s)	185, 669, 909, 971, 1130
MboI	GATC	5 cut(s)	183, 667, 907, 969, 1128
MboII	GAAGA	6 cut(s)	187, 242, 515, 536, 653, 1138
MflI	RGATCY	3 cut(s)	183, 667, 1128
MlsI	TGGCCA	1 cut(s)	703
MluCI	AATT	6 cut(s)	93, 608, 864, 952, 1040, 1173
MluNI	TGGCCA	1 cut(s)	703
MlyI	GAGTC	2 cut(s)	233, 521
MmeI	TCCRAC	2 cut(s)	815, 1020
MnlI	CCTC	7 cut(s)	93, 114, 499, 540, 575, 1116, 1339
Mox20I	TGGCCA	1 cut(s)	703
MroXI	GAANNNNTTC	2 cut(s)	822, 1073
MscI	TGGCCA	1 cut(s)	703
MseI	TTAA	4 cut(s)	576, 746, 1095, 1202
MslI	CAYNNNNRTG	2 cut(s)	317, 493
Msp20I	TGGCCA	1 cut(s)	703
MspCI	CTTAAG	1 cut(s)	745
MspI	CCGG	2 cut(s)	272, 510
MspR9I	CCNGG	2 cut(s)	273, 828
Mva1269I	GAATGC	1 cut(s)	985
MvaI	CCWGG	1 cut(s)	828
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NciI	CCSGG	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	1088
NdeI	CATATG	2 cut(s)	490, 1161
NdeII	GATC	5 cut(s)	183, 667, 907, 969, 1128
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	651
NsbI	TGCGCA	1 cut(s)	1283
NspI	RCATGY	2 cut(s)	433, 897
PciI	ACATGT	1 cut(s)	429
PctI	GAATGC	1 cut(s)	985
PdmI	GAANNNNTTC	2 cut(s)	822, 1073
PfeI	GAWTC	2 cut(s)	155, 931
PkrI	GCNGC	3 cut(s)	163, 364, 967
Ple19I	CGATCG	1 cut(s)	972
PleI	GAGTC	2 cut(s)	233, 521
PpsI	GAGTC	2 cut(s)	233, 521
Ppu21I	YACGTR	1 cut(s)	32
PscI	ACATGT	1 cut(s)	429
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	826
PspGI	CCWGG	1 cut(s)	826
PspN4I	GGNNCC	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	3 cut(s)	183, 667, 1128
PvuI	CGATCG	1 cut(s)	972
RsaI	GTAC	4 cut(s)	81, 334, 786, 1166
RsaNI	GTAC	4 cut(s)	80, 333, 785, 1165
RseI	CAYNNNNRTG	2 cut(s)	317, 493
SaqAI	TTAA	4 cut(s)	576, 746, 1095, 1202
SatI	GCNGC	3 cut(s)	162, 363, 966
Sau3AI	GATC	5 cut(s)	183, 667, 907, 969, 1128
SchI	GAGTC	2 cut(s)	233, 521
ScrFI	CCNGG	2 cut(s)	273, 828
SfaNI	GCATC	5 cut(s)	139, 414, 456, 622, 1269
SfcI	CTRYAG	2 cut(s)	360, 795
SmiMI	CAYNNNNRTG	2 cut(s)	317, 493
SmlI	CTYRAG	3 cut(s)	400, 619, 745
SmoI	CTYRAG	3 cut(s)	400, 619, 745
SnaBI	TACGTA	1 cut(s)	32
Sse9I	AATT	6 cut(s)	93, 608, 864, 952, 1040, 1173
SspI	AATATT	2 cut(s)	574, 1137
SspMI	CTAG	3 cut(s)	296, 521, 596
StyD4I	CCNGG	2 cut(s)	271, 826
StyI	CCWWGG	3 cut(s)	70, 295, 1088
TaaI	ACNGT	5 cut(s)	796, 815, 853, 919, 1301
TaiI	ACGT	4 cut(s)	34, 117, 282, 790
TaqI	TCGA	1 cut(s)	169
TasI	AATT	6 cut(s)	93, 608, 864, 952, 1040, 1173
TatI	WGTACW	2 cut(s)	332, 1164
TfiI	GAWTC	2 cut(s)	155, 931
Tru1I	TTAA	4 cut(s)	576, 746, 1095, 1202
Tru9I	TTAA	4 cut(s)	576, 746, 1095, 1202
TscAI	CASTG	2 cut(s)	67, 820
TseI	GCWGC	3 cut(s)	161, 362, 965
TspDTI	ATGAA	9 cut(s)	188, 554, 618, 677, 1043, 1082, 1119, 1148, 1184
TspRI	CASTG	2 cut(s)	67, 820
Vha464I	CTTAAG	1 cut(s)	745
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	4 cut(s)	93, 952, 1040, 1173
XceI	RCATGY	2 cut(s)	433, 897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	828
XmaJI	CCTAGG	1 cut(s)	295
XmnI	GAANNNNTTC	2 cut(s)	822, 1073
XspI	CTAG	3 cut(s)	296, 521, 596
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.