Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

68100136 .. 68100853

Gene Structure 718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0499400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGTCTCCTCGGAATTGCTTCTGATACTTATACTCTAACCATTGTCATCAATTGCTACTGCCATTTGGATCAAATGGGGTTTAGTTTGTCTGTCTTGGGCCAATTCTTCAAATCGGGTCTTCAACCAAATGTTGCAACCTTCAACACTCTGATCAAATGTTGCACCTCGGTAGCTTGTATTATTATTGAAGGTTTGTGCAAAGCTGGGAAAATGGATTCCGCCATAGAGGTCTTCTCTGGTTTGTCATTGAAAGGAGTACAACCTAATGTGAGGACGTACACTATAATGATCCATGGATTTTGTAAAGCGGGCTTATTAAATGAAGCAGATAAGTTACTGAGAGAAATGAGAGAGAAAGGCTGCTCTCCAGATGGTTGGACCTATAACATCATTATCCGAGGGTTGTTAAATAACAATGACGCATCAAGGGCTATGAGACTTATTCAAGAAATGGTAGAGTCAGGTTTCTCTGCAGATGCATCAACTGTGGAATTGATAGCTGGTTTATTGTCTAAGGATATAGTAGATCCAGCTTTGTTGCCATTGTTAAACAAATCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

188

Amino Acids

20.36

Weight (kDa)

6.1

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	9 - 55	3.3e-07	PPR repeat family
PPR_long	PF17177	30 - 158	9.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	61 - 103	1.4e-14	PPR repeat family
PPR_1	PF12854	61 - 79	9.6e-06	PPR repeat
TPR_24	PF23276	68 - 167	1.8e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	82 - 134	2.2e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	85 - 118	3.1e-15	PPR repeat
PPR	PF01535	93 - 122	5e-11	PPR repeat
PPR_2	PF13041	96 - 137	4.3e-15	PPR repeat family
PPR_1	PF12854	120 - 153	7.7e-07	PPR repeat
PPR_2	PF13041	128 - 164	2.1e-07	PPR repeat family
PPR	PF01535	128 - 157	9.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	565
AciI	CCGC	2 cut(s)	222, 311
AclWI	GGATC	3 cut(s)	78, 286, 524
AfaI	GTAC	2 cut(s)	261, 281
AgsI	TTSAA	6 cut(s)	112, 125, 145, 191, 253, 449
AluBI	AGCT	4 cut(s)	176, 206, 503, 536
AluI	AGCT	4 cut(s)	176, 206, 503, 536
Alw26I	GTCTC	2 cut(s)	11, 433
AlwI	GGATC	3 cut(s)	78, 286, 524
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	100, 381
AvaII	GGWCC	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	113, 226
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	1 cut(s)	368
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	11, 433
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	100, 381
BmsI	GCATC	3 cut(s)	434, 469, 491
BpiI	GAAGAC	2 cut(s)	113, 226
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	4 cut(s)	10, 168, 295, 400
BseDI	CCNNGG	4 cut(s)	10, 168, 295, 400
BseMII	CTCAG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	350
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	11, 433
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	70, 153, 291, 529
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	2 cut(s)	222, 311
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	3 cut(s)	78, 286, 524
BspTNI	GGTCTC	1 cut(s)	11
BssECI	CCNNGG	4 cut(s)	10, 168, 295, 400
BssMI	GATC	4 cut(s)	70, 153, 291, 529
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	341, 516
BstDSI	CCRYGG	1 cut(s)	295
BstKTI	GATC	4 cut(s)	73, 156, 294, 532
BstMAI	GTCTC	2 cut(s)	11, 433
BstMBI	GATC	4 cut(s)	70, 153, 291, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	2 cut(s)	113, 226
BstX2I	RGATCY	1 cut(s)	529
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	100, 381
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	260, 280
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	8 cut(s)	102, 176, 206, 315, 363, 434, 503, 536
CviKI_1	RGCY	8 cut(s)	102, 176, 206, 315, 363, 434, 503, 536
CviQI	GTAC	2 cut(s)	260, 280
DdeI	CTNAG	2 cut(s)	341, 516
DpnI	GATC	4 cut(s)	72, 155, 293, 531
DpnII	GATC	4 cut(s)	70, 153, 291, 529
EciI	GGCGGA	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	295
EcoT22I	ATGCAT	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	299
FaiI	YATR	8 cut(s)	33, 227, 287, 297, 387, 437, 524, 565
FatI	CATG	1 cut(s)	295
FauI	CCCGC	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	364
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	299
HinfI	GANTC	2 cut(s)	218, 461
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	4 cut(s)	14, 25, 153, 401
Hpy188III	TCNNGA	2 cut(s)	371, 449
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	2 cut(s)	151, 185
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	5 cut(s)	137, 165, 201, 476, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	2 cut(s)	341, 516
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	4 cut(s)	70, 153, 291, 529
LpnPI	CCDG	6 cut(s)	192, 225, 384, 450, 489, 546
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	3 cut(s)	434, 469, 491
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	4 cut(s)	72, 155, 293, 531
MboI	GATC	4 cut(s)	70, 153, 291, 529
MboII	GAAGA	3 cut(s)	100, 113, 226
MfeI	CAATTG	1 cut(s)	52
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	4 cut(s)	15, 52, 104, 494
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	5 cut(s)	20, 178, 223, 267, 395
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	19
MseI	TTAA	3 cut(s)	320, 410, 551
MslI	CAYNNNNRTG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	4 cut(s)	70, 153, 291, 529
NlaIII	CATG	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PsiI	TTATAA	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	100, 381
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	2 cut(s)	261, 281
RsaNI	GTAC	2 cut(s)	260, 280
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	320, 410, 551
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	4 cut(s)	70, 153, 291, 529
Sau96I	GGNCC	2 cut(s)	100, 381
SchI	GAGTC	1 cut(s)	470
SfaNI	GCATC	3 cut(s)	434, 469, 491
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	4 cut(s)	15, 52, 104, 494
SsiI	CCGC	2 cut(s)	222, 311
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	1 cut(s)	281
TasI	AATT	4 cut(s)	15, 52, 104, 494
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	320, 410, 551
Tru9I	TTAA	3 cut(s)	320, 410, 551
TseI	GCWGC	1 cut(s)	363
TspDTI	ATGAA	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	19
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.