Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

1031372 .. 1035328

Gene Structure 3957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1002500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGTTACGCCCATGTGCTCTCACCCTCGCGTCTCGCATCTCTCATCGGACAACCTTCACCTCATCTTTCACCCTGCTCGACGTGCAAACCAATTATAATGATCTGCTCGGTCAGGTGCGGGTTCTCGCCACCCGCGGCCATCTCCAGGAAGCGCTCTCACTCTTCTACTCCCTTCATCCCCCACCACCTCACTGCCCCCAAACCTACGCCACTCTCTTCCACGTCTGTGTCCGCCACCGCCACCTCCAAGACGGCCTCTCTTTGCACCGCTACATGATCGCCCACAACCCCATCCACCCACCCGACCTCTTTGTCACCAACCACCTCATCAATATGTATGCCAAATTTGGTCACTTGGACTACGCCCACCAACTGTTTGATGGAATGCCCAGGAGAAACCTTGTCTCTTGGACCGCTCTCATTTCCGGGTACGCCCTATGCGGGCAACCCCAAAAGTGTTTGAGTTTATTTGCTGGCATGTTGGTTCACCACCGCCCCAACGAATTTTCTTTCACCAGCGTGCTCAGCTCGCTCGCGGAGAGTGACGGTGTTTATGGTCGGCAGATTTGTAATCCTGGAGGGTACCGGTATCTCGGACTTGGAGCTCAAGCTATTCATCTTTTCATACAAATGTACCGTGATGGAATTGGGTTTGATCGTGCCACACTTCTCAGCGTTCTCTCATCCTTATGCAGAAGCAATGGCCTTGATGATAATGTGGTTTCTAAGTTTTGTTTCCAATTGCACTGTCTCACGATCAGAACCGGGCTTATATTAAAAATTGAAGTTGCCACTGCGTTAGTTAAAGCTTATTCAGATCTTGGAGGAGATGTTGCGGACTGTTACAGGCTTTTCTTGGAGACAAGTTGTGATCGGGATATTGTTGCGTGGACTGGCATCATAACAACTTTTGCAGAGCGAGACCCTGAAGAAGCACTCTTCCTCTTTCGTCAATTGCATCGTGAGAACTTAGTTCCCGACAGGTATACTTTCTCAATTGTTTTGAAAGCTTATGCAAGCCTTGCAACCGAGCGCCACGCCTTGGCAGTTCATTCACAAGTGATCAAAGCTGGCTTTGAGTGTGACACAGTACTTGCAAATGCCTTGATCCATGCCTATGCTAGGTGTGGCTCTATTTCCTTGTCTAAGAAAGTGTTTGATGGAATTGAACTTCGTGATGTCATTTCGTGGAATACAATGATTAAGGCTTATGCCTTGTATGGACAAGCTACAGAGGCATTGCATCTCTTCTCACGTATGAACGTCCAACCTGATCCTGCCACCTTTGTTTCTCTCCTCTGTGCTTGTAGCCATGCTGGACTGGTAGAAGAAGGAACTCGCATCTTTGACTCCATGATTGAGGTATATGGTATTGTACCTCAACTTGATCATTACGCCTGCATGGTTGATATTCTTGGTCGAGCTGGACAAATTGTTGAGGCTGAGGAGCTTCTAAGTCGAATGCCAATGGAGCCTGATTCTGTAGTCTGGAGCGCACTCCTTGGTTCATGTAGAAAGCATGGAAGAACACTGTTGGCCAAGTTAGTAGCAGATCGACTGAAAGAGCTAGCGCCAGAGGATTCATTAGGTTATGTACAAATGTCAAACATGTATTGCTCTGACGGTAAATTTGGTGAAGCAGGCCTAATTAGGAAGGAAATGAAAGGGTCTAGAGTGAAAAAGGAACCTGGATTAAGCTGGATTGAGATTGGAAATCAGGTCCATGAGTTTTGCTCCGGAGGCCAACATCATCCAGAAAGGAACATTATCTTCAGGAATCTAGAAGAACTGATTGTGCGGTTAAGGGAAATGGGTTATGTTCCAGACACAAGCTTGTCAGTGCATGATGTGGAAGAGGAACACAAAGAGGAGCTGTTGTACCATCATAGTGAAAAGCTAGCTTTAGTGTTTGCTATTATGAATGAAGGTAGTTCAAATTGTGGTCGGACTGCTATAAAAATAATGAAGAACATAAGAATCTGCGTGGACTGCCATAACTTCATGAAGTTAGCATCAAATCTACTTCAGAAAGAGATTTTTGTGAGAGACTCAAACCGGTTCCACCACTTTAATGATGGAATATGCTCTTGCAATGACTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

702

Amino Acids

78.95

Weight (kDa)

6.58

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	293 - 339	3e-06	PPR repeat family
PPR_2	PF13041	392 - 437	3.7e-07	PPR repeat family
E_motif	PF20431	512 - 569	1e-12	E motif
DYW_deaminase	PF14432	605 - 701	1.4e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc65I	GGTACC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	582
AccB7I	CCANNNNNTGG	1 cut(s)	1042
AccBSI	CCGCTC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	986
AccII	CGCG	3 cut(s)	29, 135, 536
AccIII	TCCGGA	1 cut(s)	1736
AclWI	GGATC	2 cut(s)	1102, 1268
AcoI	YGGCCR	2 cut(s)	136, 1536
AcsI	RAATTY	3 cut(s)	344, 503, 1628
AcuI	CTGAAG	3 cut(s)	948, 1756, 2009
AfaI	GTAC	7 cut(s)	431, 584, 635, 1092, 1377, 1596, 1880
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	4 cut(s)	145, 441, 1042, 1122
AflIII	ACRYGT	1 cut(s)	1608
AgeI	ACCGGT	2 cut(s)	585, 2055
AgsI	TTSAA	4 cut(s)	785, 1006, 1169, 1935
AjiI	CACGTC	2 cut(s)	82, 223
AjnI	CCWGG	4 cut(s)	144, 389, 574, 1687
AleI	CACNNNNGTG	2 cut(s)	225, 518
Alw21I	GWGCWC	3 cut(s)	19, 525, 607
Alw26I	GTCTC	6 cut(s)	36, 409, 755, 854, 915, 2040
AlwI	GGATC	2 cut(s)	1102, 1268
Aor13HI	TCCGGA	1 cut(s)	1736
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	6 cut(s)	136, 253, 703, 1536, 1642, 1741
ApoI	RAATTY	3 cut(s)	344, 503, 1628
ArsI	GACNNNNNNTTYG	2 cut(s)	1613, 1645
AsiGI	ACCGGT	2 cut(s)	585, 2055
Asp718I	GGTACC	1 cut(s)	582
AspLEI	GCGC	4 cut(s)	154, 1035, 1496, 1573
AspS9I	GGNCC	2 cut(s)	411, 1720
AsuC2I	CCSGG	2 cut(s)	427, 766
AsuHPI	GGTGA	7 cut(s)	13, 49, 61, 307, 479, 505, 1646
AsuNHI	GCTAGC	2 cut(s)	1567, 1897
AvaII	GGWCC	2 cut(s)	411, 1720
BaeI	ACNNNNGTAYC	2 cut(s)	617, 650
BalI	TGGCCA	1 cut(s)	1538
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	607
Bbv12I	GWGCWC	3 cut(s)	19, 525, 607
BbvCI	CCTCAGC	1 cut(s)	1443
BccI	CCATC	7 cut(s)	147, 299, 374, 635, 1154, 1890, 2069
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	4 cut(s)	146, 391, 576, 1689
BclI	TGATCA	2 cut(s)	1062, 1387
BcnI	CCSGG	2 cut(s)	427, 766
BcoDI	GTCTC	6 cut(s)	36, 409, 755, 854, 915, 2040
BfaI	CTAG	5 cut(s)	1122, 1568, 1671, 1781, 1898
BfmI	CTRYAG	2 cut(s)	1230, 1482
BfoI	RGCGCY	3 cut(s)	155, 1036, 1574
BglII	AGATCT	1 cut(s)	817
BisI	GCNGC	1 cut(s)	136
BlpI	GCTNAGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	137
BmcAI	AGTACT	1 cut(s)	1092
Bme1390I	CCNGG	6 cut(s)	146, 391, 427, 576, 766, 1689
Bme18I	GGWCC	2 cut(s)	411, 1720
BmgBI	CACGTC	2 cut(s)	82, 223
BmgT120I	GGNCC	2 cut(s)	411, 1720
BmiI	GGNNCC	4 cut(s)	584, 1473, 1686, 2060
BmrFI	CCNGG	6 cut(s)	146, 391, 427, 576, 766, 1689
BmsI	GCATC	6 cut(s)	45, 906, 967, 1252, 1350, 2021
BmtI	GCTAGC	2 cut(s)	1571, 1901
BplI	GAGNNNNNCTC	2 cut(s)	1718, 1750
BpmI	CTGGAG	3 cut(s)	128, 597, 1510
Bpu10I	CCTNAGC	1 cut(s)	1443
Bpu1102I	GCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	591
BpuMI	CCSGG	2 cut(s)	427, 766
BsaAI	YACGTR	1 cut(s)	1256
BsaI	GGTCTC	1 cut(s)	915
BsaJI	CCNNGG	4 cut(s)	133, 389, 1041, 1501
BsaWI	WCCGGW	3 cut(s)	585, 1736, 2055
BsaXI	ACNNNNNCTCC	4 cut(s)	816, 846, 1862, 1892
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 441, 1042, 1122
Bse118I	RCCGGY	2 cut(s)	585, 2055
Bse1I	ACTGG	3 cut(s)	898, 1326, 2105
Bse3DI	GCAATG	3 cut(s)	706, 1238, 2098
BseAI	TCCGGA	1 cut(s)	1736
BseBI	CCWGG	4 cut(s)	146, 391, 576, 1689
BseDI	CCNNGG	4 cut(s)	133, 389, 1041, 1501
BseGI	GGATG	4 cut(s)	175, 291, 683, 1750
BseLI	CCNNNNNNNGG	4 cut(s)	145, 441, 1042, 1122
BseMI	GCAATG	3 cut(s)	706, 1238, 2098
BseMII	CTCAG	3 cut(s)	538, 685, 1434
BseNI	ACTGG	3 cut(s)	898, 1326, 2105
BseRI	GAGGAG	4 cut(s)	840, 1286, 1460, 1883
Bsh1236I	CGCG	3 cut(s)	29, 135, 536
BshFI	GGCC	6 cut(s)	138, 255, 705, 1538, 1644, 1743
BshNI	GGYRCC	1 cut(s)	582
BshTI	ACCGGT	2 cut(s)	585, 2055
BsiHKAI	GWGCWC	3 cut(s)	19, 525, 607
BsiSI	CCGG	5 cut(s)	426, 586, 765, 1737, 2056
BslI	CCNNNNNNNGG	4 cut(s)	145, 441, 1042, 1122
BsmAI	GTCTC	6 cut(s)	36, 409, 755, 854, 915, 2040
BsmBI	CGTCTC	1 cut(s)	36
BsmI	GAATGC	2 cut(s)	390, 1467
BsnI	GGCC	6 cut(s)	138, 255, 705, 1538, 1644, 1743
Bso31I	GGTCTC	1 cut(s)	915
Bsp1286I	GDGCHC	3 cut(s)	19, 525, 607
Bsp13I	TCCGGA	1 cut(s)	1736
Bsp1407I	TGTACA	1 cut(s)	1594
Bsp1720I	GCTNAGC	1 cut(s)	524
BspANI	GGCC	6 cut(s)	138, 255, 705, 1538, 1644, 1743
BspCNI	CTCAG	3 cut(s)	537, 684, 1435
BspEI	TCCGGA	1 cut(s)	1736
BspFNI	CGCG	3 cut(s)	29, 135, 536
BspHI	TCATGA	1 cut(s)	2001
BspLI	GGNNCC	4 cut(s)	584, 1473, 1686, 2060
BspOI	GCTAGC	2 cut(s)	1571, 1901
BspPI	GGATC	2 cut(s)	1102, 1268
BspT107I	GGYRCC	1 cut(s)	582
BspTNI	GGTCTC	1 cut(s)	915
BsrBI	CCGCTC	1 cut(s)	416
BsrDI	GCAATG	3 cut(s)	706, 1238, 2098
BsrFI	RCCGGY	2 cut(s)	585, 2055
BsrGI	TGTACA	1 cut(s)	1594
BsrI	ACTGG	3 cut(s)	898, 1326, 2105
BssAI	RCCGGY	2 cut(s)	585, 2055
BssECI	CCNNGG	4 cut(s)	133, 389, 1041, 1501
BssNAI	GTATAC	1 cut(s)	987
BssT1I	CCWWGG	2 cut(s)	1041, 1501
Bst1107I	GTATAC	1 cut(s)	987
Bst2UI	CCWGG	4 cut(s)	146, 391, 576, 1689
Bst4CI	ACNGT	8 cut(s)	375, 548, 638, 749, 842, 1090, 1533, 1625
Bst6I	CTCTTC	5 cut(s)	167, 221, 944, 1253, 1848
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstAUI	TGTACA	1 cut(s)	1594
BstBAI	YACGTR	1 cut(s)	1256
BstDEI	CTNAG	7 cut(s)	524, 671, 726, 970, 1146, 1443, 1454
BstDSI	CCRYGG	1 cut(s)	133
BstENI	CCTNNNNNAGG	1 cut(s)	1120
BstF5I	GGATG	4 cut(s)	175, 291, 683, 1750
BstFNI	CGCG	3 cut(s)	29, 135, 536
BstH2I	RGCGCY	3 cut(s)	155, 1036, 1574
BstHHI	GCGC	4 cut(s)	154, 1035, 1496, 1573
BstMAI	GTCTC	6 cut(s)	36, 409, 755, 854, 915, 2040
BstMWI	GCNNNNNNNGC	8 cut(s)	82, 525, 529, 1022, 1235, 1471, 1740, 1989
BstNI	CCWGG	4 cut(s)	146, 391, 576, 1689
BstNSI	RCATGY	2 cut(s)	481, 1612
BstSCI	CCNGG	6 cut(s)	144, 389, 425, 574, 764, 1687
BstSFI	CTRYAG	2 cut(s)	1230, 1482
BstUI	CGCG	3 cut(s)	29, 135, 536
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BstZ17I	GTATAC	1 cut(s)	987
BsuRI	GGCC	6 cut(s)	138, 255, 705, 1538, 1644, 1743
BtgI	CCRYGG	1 cut(s)	133
BtrI	CACGTC	2 cut(s)	82, 223
BtsCI	GGATG	4 cut(s)	175, 291, 683, 1750
BtsI	GCAGTG	2 cut(s)	190, 792
BtsIMutI	CAGTG	5 cut(s)	190, 745, 792, 1529, 1845
CciI	TCATGA	1 cut(s)	2001
CfoI	GCGC	4 cut(s)	154, 1035, 1496, 1573
Cfr10I	RCCGGY	2 cut(s)	585, 2055
Cfr13I	GGNCC	2 cut(s)	411, 1720
Cfr42I	CCGCGG	1 cut(s)	136
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	7 cut(s)	430, 583, 634, 1091, 1376, 1595, 1879
CspAI	ACCGGT	2 cut(s)	585, 2055
CviQI	GTAC	7 cut(s)	430, 583, 634, 1091, 1376, 1595, 1879
DdeI	CTNAG	7 cut(s)	524, 671, 726, 970, 1146, 1443, 1454
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	2 cut(s)	136, 1536
Eam1104I	CTCTTC	5 cut(s)	167, 221, 944, 1253, 1848
EarI	CTCTTC	5 cut(s)	167, 221, 944, 1253, 1848
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	1041, 1501
Eco147I	AGGCCT	1 cut(s)	1644
Eco24I	GRGCYC	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	915
Eco47I	GGWCC	2 cut(s)	411, 1720
Eco47III	AGCGCT	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	3 cut(s)	948, 1756, 2009
EcoICRI	GAGCTC	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	1120
EcoRII	CCWGG	4 cut(s)	144, 389, 574, 1687
EcoT14I	CCWWGG	2 cut(s)	1041, 1501
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	2 cut(s)	1041, 1501
Esp3I	CGTCTC	1 cut(s)	36
FauI	CCCGC	3 cut(s)	111, 140, 434
FbaI	TGATCA	2 cut(s)	1062, 1387
FblI	GTMKAC	1 cut(s)	986
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	4 cut(s)	162, 278, 670, 1737
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	5 cut(s)	1122, 1568, 1671, 1781, 1898
GlaI	GCGC	4 cut(s)	153, 1034, 1495, 1572
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	3 cut(s)	128, 597, 1510
HaeII	RGCGCY	3 cut(s)	155, 1036, 1574
HaeIII	GGCC	6 cut(s)	138, 255, 705, 1538, 1644, 1743
HapII	CCGG	5 cut(s)	426, 586, 765, 1737, 2056
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	4 cut(s)	154, 1035, 1496, 1573
Hin6I	GCGC	4 cut(s)	152, 1033, 1494, 1571
HinP1I	GCGC	4 cut(s)	152, 1033, 1494, 1571
HindIII	AAGCTT	3 cut(s)	807, 1008, 1831
HinfI	GANTC	6 cut(s)	1349, 1478, 1580, 1777, 1977, 2048
HpaII	CCGG	5 cut(s)	426, 586, 765, 1737, 2056
HphI	GGTGA	7 cut(s)	13, 49, 61, 307, 479, 505, 1646
Hpy166II	GTNNAC	4 cut(s)	487, 891, 987, 1987
Hpy188I	TCNGA	7 cut(s)	48, 596, 761, 817, 1621, 1947, 2028
Hpy8I	GTNNAC	4 cut(s)	487, 891, 987, 1987
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	5 cut(s)	64, 182, 1325, 1648, 1919
HpyCH4III	ACNGT	8 cut(s)	375, 548, 638, 749, 842, 1090, 1533, 1625
HpyCH4IV	ACGT	4 cut(s)	81, 222, 1255, 1263
HpyF10VI	GCNNNNNNNGC	8 cut(s)	82, 525, 529, 1022, 1235, 1471, 1740, 1989
HpyF3I	CTNAG	7 cut(s)	524, 671, 726, 970, 1146, 1443, 1454
HpySE526I	ACGT	4 cut(s)	81, 222, 1255, 1263
HspAI	GCGC	4 cut(s)	152, 1033, 1494, 1571
Kpn2I	TCCGGA	1 cut(s)	1736
KpnI	GGTACC	1 cut(s)	586
Ksp22I	TGATCA	2 cut(s)	1062, 1387
KspI	CCGCGG	1 cut(s)	136
LmnI	GCTCC	6 cut(s)	602, 1447, 1471, 1491, 1739, 1870
LweI	GCATC	6 cut(s)	45, 906, 967, 1252, 1350, 2021
MaeI	CTAG	5 cut(s)	1122, 1568, 1671, 1781, 1898
MaeII	ACGT	4 cut(s)	81, 222, 1255, 1263
MaeIII	GTNAC	6 cut(s)	3, 313, 350, 542, 842, 1082
MbiI	CCGCTC	1 cut(s)	416
MfeI	CAATTG	3 cut(s)	740, 953, 996
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	3 cut(s)	19, 525, 607
MlsI	TGGCCA	1 cut(s)	1538
MluNI	TGGCCA	1 cut(s)	1538
MlyI	GAGTC	2 cut(s)	1343, 2042
MmeI	TCCRAC	2 cut(s)	1291, 1925
Mox20I	TGGCCA	1 cut(s)	1538
MroI	TCCGGA	1 cut(s)	1736
MscI	TGGCCA	1 cut(s)	1538
MseI	TTAA	6 cut(s)	776, 804, 1203, 1694, 1802, 2070
MslI	CAYNNNNRTG	8 cut(s)	225, 332, 518, 629, 688, 1116, 1887, 2070
Msp20I	TGGCCA	1 cut(s)	1538
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	5 cut(s)	426, 586, 765, 1737, 2056
MspR9I	CCNGG	6 cut(s)	146, 391, 427, 576, 766, 1689
MunI	CAATTG	3 cut(s)	740, 953, 996
Mva1269I	GAATGC	2 cut(s)	390, 1467
MvaI	CCWGG	4 cut(s)	146, 391, 576, 1689
MvnI	CGCG	3 cut(s)	29, 135, 536
MwoI	GCNNNNNNNGC	8 cut(s)	82, 525, 529, 1022, 1235, 1471, 1740, 1989
NciI	CCSGG	2 cut(s)	427, 766
NheI	GCTAGC	2 cut(s)	1567, 1897
NlaIV	GGNNCC	4 cut(s)	584, 1473, 1686, 2060
NmuCI	GTSAC	4 cut(s)	313, 350, 542, 1082
NspI	RCATGY	2 cut(s)	481, 1612
OliI	CACNNNNGTG	2 cut(s)	225, 518
PagI	TCATGA	1 cut(s)	2001
PceI	AGGCCT	1 cut(s)	1644
PciI	ACATGT	1 cut(s)	1608
PctI	GAATGC	2 cut(s)	390, 1467
PfeI	GAWTC	4 cut(s)	1478, 1580, 1777, 1977
PflMI	CCANNNNNTGG	1 cut(s)	1042
PfoI	TCCNGGA	2 cut(s)	144, 574
PinAI	ACCGGT	2 cut(s)	585, 2055
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	2 cut(s)	1343, 2042
PpsI	GAGTC	2 cut(s)	1343, 2042
Ppu21I	YACGTR	1 cut(s)	1256
PscI	ACATGT	1 cut(s)	1608
PsiI	TTATAA	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	4 cut(s)	144, 389, 574, 1687
PspGI	CCWGG	4 cut(s)	144, 389, 574, 1687
PspN4I	GGNNCC	4 cut(s)	584, 1473, 1686, 2060
PspPI	GGNCC	2 cut(s)	411, 1720
PsuI	RGATCY	1 cut(s)	817
RsaI	GTAC	7 cut(s)	431, 584, 635, 1092, 1377, 1596, 1880
RsaNI	GTAC	7 cut(s)	430, 583, 634, 1091, 1376, 1595, 1879
RseI	CAYNNNNRTG	8 cut(s)	225, 332, 518, 629, 688, 1116, 1887, 2070
SacI	GAGCTC	1 cut(s)	607
SacII	CCGCGG	1 cut(s)	136
SaqAI	TTAA	6 cut(s)	776, 804, 1203, 1694, 1802, 2070
SatI	GCNGC	1 cut(s)	136
Sau96I	GGNCC	2 cut(s)	411, 1720
ScaI	AGTACT	1 cut(s)	1092
SchI	GAGTC	2 cut(s)	1343, 2042
ScrFI	CCNGG	6 cut(s)	146, 391, 427, 576, 766, 1689
SduI	GDGCHC	3 cut(s)	19, 525, 607
SfaNI	GCATC	6 cut(s)	45, 906, 967, 1252, 1350, 2021
SfcI	CTRYAG	2 cut(s)	1230, 1482
Sfr303I	CCGCGG	1 cut(s)	136
SgrBI	CCGCGG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	411, 1720
SmiMI	CAYNNNNRTG	8 cut(s)	225, 332, 518, 629, 688, 1116, 1887, 2070
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
SseBI	AGGCCT	1 cut(s)	1644
SspMI	CTAG	5 cut(s)	1122, 1568, 1671, 1781, 1898
SstI	GAGCTC	1 cut(s)	607
StuI	AGGCCT	1 cut(s)	1644
StyD4I	CCNGG	6 cut(s)	144, 389, 425, 574, 764, 1687
StyI	CCWWGG	2 cut(s)	1041, 1501
TaaI	ACNGT	8 cut(s)	375, 548, 638, 749, 842, 1090, 1533, 1625
TaiI	ACGT	4 cut(s)	84, 225, 1258, 1266
TaqI	TCGA	4 cut(s)	78, 1420, 1459, 1555
TaqII	GACCGA	1 cut(s)	98
TatI	WGTACW	2 cut(s)	1090, 1594
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	4 cut(s)	1478, 1580, 1777, 1977
Tru1I	TTAA	6 cut(s)	776, 804, 1203, 1694, 1802, 2070
Tru9I	TTAA	6 cut(s)	776, 804, 1203, 1694, 1802, 2070
TscAI	CASTG	5 cut(s)	197, 752, 799, 1536, 1845
TseFI	GTSAC	4 cut(s)	313, 350, 542, 1082
Tsp45I	GTSAC	4 cut(s)	313, 350, 542, 1082
TspRI	CASTG	5 cut(s)	197, 752, 799, 1536, 1845
Van91I	CCANNNNNTGG	1 cut(s)	1042
VpaK11BI	GGWCC	2 cut(s)	411, 1720
XagI	CCTNNNNNAGG	1 cut(s)	1120
XapI	RAATTY	3 cut(s)	344, 503, 1628
XbaI	TCTAGA	2 cut(s)	1670, 1780
XceI	RCATGY	2 cut(s)	481, 1612
XcmI	CCANNNNNNNNNTGG	2 cut(s)	377, 2072
XmiI	GTMKAC	1 cut(s)	986
XspI	CTAG	5 cut(s)	1122, 1568, 1671, 1781, 1898
ZrmI	AGTACT	1 cut(s)	1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.