Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

6062217 .. 6063177

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTACGCCAATGTGCTCGCGCGCGTCATAGAACCTTCACCTCAATCAACAATCCGGTTGTTCCCACACCTCCCAGCCTCAACATGCAAAGGAACAATCTTCTCGGCGAAGTAGAGGCCCTGGCCACGCGCGGCCAACTCAACGAAGCGCTCTCACTCTTCTACACTCTTCAACCGCCACCAACTCAAACTCACTCCAACCAAACCTACGCCACTCTCTTCCACGCATGCGCTCGCCACCACTGCCTTCAACAAGGCCTCTCTCTGCACCATTACATGCTTGCCCACAACCCCATCACTCCTCCAGACCTCTTTGTCTCCAACCACCTCATCAACATGTACTCCAAATTCGGCTACCTAGACCACGCCCGCCAACTGTTCGTTGAAATGCCCAGAAGAAACCTCGTCACCTGGACCGCTCTCATTTCCGGGTACGCACAGCGGGGTCGGGCTGTAGCTTGTTTTCGTTTATTTGCTGCCATGTTGGCGCATTACCTCCCGAATGAGTTTGCATTTACCAGCGTGCTTAGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

178

Amino Acids

20.23

Weight (kDa)

9.69

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	134 - 177	2.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	419
AccII	CGCG	5 cut(s)	21, 23, 25, 130, 132
AciI	CCGC	5 cut(s)	132, 176, 370, 417, 442
AcoI	YGGCCR	2 cut(s)	123, 133
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	2 cut(s)	341, 434
AfeI	AGCGCT	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	3 cut(s)	173, 251, 386
AjnI	CCWGG	2 cut(s)	120, 410
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	322
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	4 cut(s)	117, 123, 133, 256
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	6 cut(s)	23, 25, 132, 151, 233, 490
AspS9I	GGNCC	2 cut(s)	118, 414
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	31, 400
AvaII	GGWCC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	122, 412
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	485
BisI	GCNGC	2 cut(s)	133, 477
BlsI	GCNGC	2 cut(s)	134, 478
Bme1390I	CCNGG	3 cut(s)	122, 412, 430
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	118, 414
BmrFI	CCNGG	3 cut(s)	122, 412, 430
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
BseBI	CCWGG	2 cut(s)	122, 412
BseDI	CCNNGG	1 cut(s)	120
BsePI	GCGCGC	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	5 cut(s)	21, 23, 25, 130, 132
BshFI	GGCC	4 cut(s)	119, 125, 135, 258
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	56, 429
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	119, 125, 135, 258
Bsp1286I	GDGCHC	1 cut(s)	19
BspACI	CCGC	5 cut(s)	132, 176, 370, 417, 442
BspANI	GGCC	4 cut(s)	119, 125, 135, 258
BspFNI	CGCG	5 cut(s)	21, 23, 25, 130, 132
BsrBI	CCGCTC	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	120
BssHII	GCGCGC	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	122, 412
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	3 cut(s)	164, 174, 224
BstC8I	GCNNGC	7 cut(s)	19, 23, 229, 235, 282, 370, 524
BstDEI	CTNAG	1 cut(s)	527
BstFNI	CGCG	5 cut(s)	21, 23, 25, 130, 132
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	6 cut(s)	23, 25, 132, 151, 233, 490
BstMAI	GTCTC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 485
BstNI	CCWGG	2 cut(s)	122, 412
BstNSI	RCATGY	4 cut(s)	88, 231, 280, 340
BstSCI	CCNGG	3 cut(s)	120, 410, 428
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	5 cut(s)	21, 23, 25, 130, 132
BstV1I	GCAGC	1 cut(s)	463
BsuRI	GGCC	4 cut(s)	119, 125, 135, 258
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	7 cut(s)	19, 23, 229, 235, 282, 370, 524
CfoI	GCGC	6 cut(s)	23, 25, 132, 151, 233, 490
Cfr13I	GGNCC	2 cut(s)	118, 414
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	340, 433
CviAII	CATG	5 cut(s)	85, 228, 277, 337, 481
CviJI	RGCY	8 cut(s)	78, 119, 125, 135, 258, 354, 452, 458
CviKI_1	RGCY	8 cut(s)	78, 119, 125, 135, 258, 354, 452, 458
CviQI	GTAC	2 cut(s)	340, 433
DdeI	CTNAG	1 cut(s)	527
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	2 cut(s)	123, 133
Eam1104I	CTCTTC	3 cut(s)	164, 174, 224
EarI	CTCTTC	3 cut(s)	164, 174, 224
Eco147I	AGGCCT	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	414
Eco47III	AGCGCT	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	120, 410
FaeI	CATG	5 cut(s)	88, 231, 280, 340, 484
FaiI	YATR	6 cut(s)	30, 86, 229, 278, 338, 482
FatI	CATG	5 cut(s)	84, 227, 276, 336, 480
FauI	CCCGC	2 cut(s)	377, 435
Fnu4HI	GCNGC	2 cut(s)	133, 477
Fsp4HI	GCNGC	2 cut(s)	133, 477
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	6 cut(s)	22, 24, 131, 150, 232, 489
GluI	GCNGC	2 cut(s)	133, 477
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	119, 125, 135, 258
HapII	CCGG	2 cut(s)	56, 429
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	6 cut(s)	23, 25, 132, 151, 233, 490
Hin1II	CATG	5 cut(s)	88, 231, 280, 340, 484
Hin6I	GCGC	6 cut(s)	21, 23, 130, 149, 231, 488
HinP1I	GCGC	6 cut(s)	21, 23, 130, 149, 231, 488
HpaII	CCGG	2 cut(s)	56, 429
HphI	GGTGA	2 cut(s)	31, 400
Hpy188III	TCNNGA	3 cut(s)	305, 499, 534
HpyAV	CCTTC	2 cut(s)	46, 257
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	88, 268, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 485
HpyF3I	CTNAG	1 cut(s)	527
Hsp92II	CATG	5 cut(s)	88, 231, 280, 340, 484
HspAI	GCGC	6 cut(s)	21, 23, 130, 149, 231, 488
Lsp1109I	GCAGC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	406
MauBI	CGCGCGCG	1 cut(s)	21
MbiI	CCGCTC	1 cut(s)	419
MboII	GAAGA	5 cut(s)	92, 151, 161, 211, 408
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	347
MluNI	TGGCCA	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	222, 345
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	2 cut(s)	56, 429
MspR9I	CCNGG	3 cut(s)	122, 412, 430
MvaI	CCWGG	2 cut(s)	122, 412
MvnI	CGCG	5 cut(s)	21, 23, 25, 130, 132
MwoI	GCNNNNNNNGC	2 cut(s)	243, 485
NciI	CCSGG	1 cut(s)	430
NlaIII	CATG	5 cut(s)	88, 231, 280, 340, 484
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	406
NspI	RCATGY	4 cut(s)	88, 231, 280, 340
PaeI	GCATGC	1 cut(s)	231
PauI	GCGCGC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	258
PciI	ACATGT	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	134, 478
PscI	ACATGT	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	120, 410
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	120, 410
PspPI	GGNCC	2 cut(s)	118, 414
PteI	GCGCGC	1 cut(s)	21
RsaI	GTAC	2 cut(s)	341, 434
RsaNI	GTAC	2 cut(s)	340, 433
RseI	CAYNNNNRTG	1 cut(s)	335
SatI	GCNGC	2 cut(s)	133, 477
Sau96I	GGNCC	2 cut(s)	118, 414
ScrFI	CCNGG	3 cut(s)	122, 412, 430
SduI	GDGCHC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	414
SmiMI	CAYNNNNRTG	1 cut(s)	335
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	1 cut(s)	347
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	5 cut(s)	132, 176, 370, 417, 442
SspMI	CTAG	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	120, 410, 428
TaaI	ACNGT	1 cut(s)	378
TasI	AATT	1 cut(s)	347
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	135
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	406
TspRI	CASTG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	4 cut(s)	88, 231, 280, 340
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.