Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

600665 .. 603387

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGCTACGCCCGTGTGCTTGCGCGTGTCGTAGAACCTTGACCTCAATCAACCATCCGGTTCTTCCCACACCTCCCAGCCTCAACCTGCAAACCAATACTCTTCTCGGCGAAGTAGCGGCCCTCGCCACGCGCGGCCAACTCAACGAAGCGCTCTCACTCTTCTACACTCTTCAACCGCCACCCTCTCACTGCAACCAAACCTATGCCACTCTCTTCCACGCATGTGCTCGCCACCACTCCCTCCAACAAGGCCTCTCTCTGCACCATTACATGCTTGCCCACAACCCCATTACTCCTCATCCCGACCTCTTTGTCTCCAACCACCTCATCAACATGTACGCCAAATTTGGCTACTTGGACCATGCCCGCCAGCTGTTCGATGAAATGCCTAGCAGAAACCTCGTCACCTGGACCGCTCTCATTTCCGGGTACGCACAGCGGGGTCGAGCTGACAATTGTTTTCGTTTATTTGCTGCCATGTTGGTGCATTACCTCCCGAATGAGTTTGCATTTGCCAGCGTGCTTAGTTCGTGTGCCGATAGTGATGGTGGACATGGCCGGCAGGTACACGCCCTCGCTTTGAAGATGTCTTTGGATGCTTGCCTTTACTTTGCGAATGCTCTCATTACCATGTATAGCAAGGTGTGTGATCATGGAGGTGTGTTTGATGTTAGTAGAGACGAGGCATGCAAGGTGTTTAGAAGCATGGAATCCCGGAATCTTATATCGTGGAATTCCATGATTGCAGGGTTTCAGTGTCGTGGACGTGTAGCTCAAGCTATTGATCTGTTTGTACAAATGCACCTTGATGGACTCGAGTTTGACCGTGCCACACTTCTCAGCGTCTTATCTTCCTTGAATGGAGTAAATGACATTGATGATGTTGTGGTTACTAAGTTTTGTTATCAATTGCATTGTCTGGTTATCAAAACCGGGTTTATATTAGGAATTGAAGTGGTCACTGCGCTAGTTAAAGCTTATTCAGATCTTGGAGGGGATGCTGCTGACTGTTACAGGCTCTTCTCTGAGACAAGCTGTCACCGGGATATTGTTGCGTGGACGGGCATTATGACAATATTTTCCGAGCGGGACCCTGAAGAAGCACTCTCCCTTTTTCGTCAATTACGCCGGGAGAATTTAGCTCCAGACAGGTATACCTTCTCCATTGTTTTAAAAGCCTACGCAAGCCTTGCAACCGAGCGCCATGCCTCAGCAGTTCATTCTCAAGTTATCAAAGGCGGGTTTGGGGGTGACACAGTCCTTGCAAACGCCTTGATCCATGCATATGCTCGGTGCGGCTCCATTTCCTTGTCTAAGCAAGTTTTTGATGGAATTGAGTTTCGTGATGTTGTTTCTTGGAACACAATGCTCAAGGCTTATGCCTTGTATGGACAAGCTGCAGAGGCACTGCAGCTTTTTTCACAAATGGACGTTAAACCTGATTCTGCTACATTTGTTTCTCTCCTCTGTGCTTGTAGTCATGCTGGACTGGTAGAAGAAGGAACCAGAATCTTTGACTCCATGCTTGAGAGATATGGCATTGTACCTCTATGTGATCATTATGCCTGCATGGTTGACACTCTTGGTCGAGCTGGACGAGTTGGTGAGGCTGAGAAGCTTGTAAGTAGAATGCCAATGGAGCCCGATTCTGTTGTTTGGAGTGCACTCCTTGGATCATGTAGGAAGCATGGAAATACACAGTTGGCCAAGTTAGCAGCTGATAGACTGAAGGAGTTGGCTCCAGAGGGTTCATTAGTTTATGTACAAATGTCAAATATATATAGCTCTGATGGTAACTTTGGTGAAGCGGGCCTGATTAGGAAGGAAATGAAAGGGTCTCGAGTGAAAAAGGAACCTGGATTAAGCTGGATTGAGATCAGAAATCAGGTGCATGAGTTCTCCTCTGGAGGCCGACGCCATCCGGAAAGGAATCTTATAAGCAGAAAACTAAAAGAACTGATTGGACAGTTAAGGGAAATTGGTTATGTTCCAGATACAAGCTCATCCTTGCATGATGTGGAAGAGGAGCACAAAGAGGAGCAATTGTACCATCATAGTGAGAAGCTAGCTTTAGTGTTTGCCATTATGAATGAAAGCAGTTTACATTGTGGTAGGACTGGTATAAAAATAATGAAGAATATCAGAGTATGCGTGGATTGCCATAACTTCATGAAGTTAGCATCAAATCTACTTCAAAAGGATATTGTTGTGAGAGACTCAAACCGTTTCCACCACTTTAAAGATGGCATATGTTCTTGCAATGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

757

Amino Acids

84.44

Weight (kDa)

6.81

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	133 - 179	8.3e-06	PPR repeat family
PPR_2	PF13041	349 - 395	7.3e-08	PPR repeat family
PPR_2	PF13041	448 - 493	8.9e-09	PPR repeat family
E_motif	PF20431	563 - 625	6.9e-15	E motif
DYW_deaminase	PF14432	661 - 757	4.9e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1937
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc36I	ACCTGC	2 cut(s)	93, 553
AccBSI	CCGCTC	2 cut(s)	416, 1087
AccI	GTMKAC	1 cut(s)	1154
AccII	CGCG	3 cut(s)	23, 130, 132
AccIII	TCCGGA	1 cut(s)	1921
AclWI	GGATC	2 cut(s)	1270, 1681
AcoI	YGGCCR	3 cut(s)	133, 556, 1704
AcsI	RAATTY	3 cut(s)	344, 733, 1135
AcuI	CTGAAG	2 cut(s)	1116, 1748
AcyI	GRCGYC	1 cut(s)	1915
AfaI	GTAC	7 cut(s)	338, 431, 567, 795, 1545, 1764, 2048
AfeI	AGCGCT	1 cut(s)	150
AflIII	ACRYGT	2 cut(s)	333, 766
AgsI	TTSAA	5 cut(s)	173, 583, 859, 953, 2195
AhdI	GACNNNNNGTC	1 cut(s)	1035
AjiI	CACGTC	1 cut(s)	767
AjnI	CCWGG	2 cut(s)	407, 1855
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AleI	CACNNNNGTG	1 cut(s)	222
Alw21I	GWGCWC	3 cut(s)	229, 1666, 2031
Alw26I	GTCTC	5 cut(s)	319, 672, 1022, 1842, 2208
Alw44I	GTGCAC	1 cut(s)	1662
AlwI	GGATC	2 cut(s)	1270, 1681
Ama87I	CYCGRG	2 cut(s)	815, 1839
Aor13HI	TCCGGA	1 cut(s)	1921
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	7 cut(s)	117, 133, 250, 556, 1704, 1810, 1909
ApaLI	GTGCAC	1 cut(s)	1662
ApeKI	GCWGC	5 cut(s)	473, 1001, 1397, 1411, 1715
ApoI	RAATTY	3 cut(s)	344, 733, 1135
AspLEI	GCGC	5 cut(s)	23, 132, 151, 967, 1203
AspS9I	GGNCC	5 cut(s)	118, 358, 411, 1090, 1810
AsuC2I	CCSGG	5 cut(s)	427, 715, 934, 1043, 1130
AsuHPI	GGTGA	5 cut(s)	397, 1031, 1262, 1616, 1814
AsuNHI	GCTAGC	1 cut(s)	2065
AvaI	CYCGRG	2 cut(s)	815, 1839
AvaII	GGWCC	3 cut(s)	358, 411, 1090
BaeGI	GKGCMC	1 cut(s)	1666
BalI	TGGCCA	1 cut(s)	1706
BanII	GRGCYC	1 cut(s)	1644
Bbv12I	GWGCWC	3 cut(s)	229, 1666, 2031
BbvCI	CCTCAGC	1 cut(s)	1210
BbvI	GCAGC	5 cut(s)	460, 988, 1384, 1423, 1727
BccI	CCATC	8 cut(s)	60, 539, 803, 1322, 1784, 1926, 2058, 2237
BcgI	CGANNNNNNTGC	4 cut(s)	382, 416, 1187, 1221
BciT130I	CCWGG	2 cut(s)	409, 1857
BclI	TGATCA	2 cut(s)	649, 1555
BcnI	CCSGG	5 cut(s)	427, 715, 934, 1043, 1130
BcoDI	GTCTC	5 cut(s)	319, 672, 1022, 1842, 2208
BfaI	CTAG	3 cut(s)	390, 968, 2066
BfmI	CTRYAG	2 cut(s)	1398, 1409
BfoI	RGCGCY	2 cut(s)	152, 1204
BfuAI	ACCTGC	2 cut(s)	93, 553
BglII	AGATCT	1 cut(s)	985
BisI	GCNGC	8 cut(s)	117, 133, 474, 1002, 1297, 1398, 1412, 1716
BlsI	GCNGC	8 cut(s)	118, 134, 475, 1003, 1298, 1399, 1413, 1717
Bme1390I	CCNGG	7 cut(s)	409, 427, 715, 934, 1043, 1130, 1857
Bme18I	GGWCC	3 cut(s)	358, 411, 1090
BmeRI	GACNNNNNGTC	1 cut(s)	1035
BmeT110I	CYCGRG	2 cut(s)	815, 1839
BmgBI	CACGTC	1 cut(s)	767
BmgT120I	GGNCC	5 cut(s)	118, 358, 411, 1090, 1810
BmiI	GGNNCC	7 cut(s)	1091, 1092, 1300, 1504, 1641, 1740, 1854
BmrFI	CCNGG	7 cut(s)	409, 427, 715, 934, 1043, 1130, 1857
BmsI	GCATC	3 cut(s)	586, 988, 2189
BmtI	GCTAGC	1 cut(s)	2069
BplI	GAGNNNNNCTC	2 cut(s)	1886, 1918
BpmI	CTGGAG	3 cut(s)	1128, 1725, 1926
Bpu10I	CCTNAGC	1 cut(s)	1210
BpuEI	CTTGAG	4 cut(s)	759, 1209, 1355, 1547
BpuMI	CCSGG	5 cut(s)	427, 715, 934, 1043, 1130
BsaBI	GATNNNNATC	1 cut(s)	1874
BsaHI	GRCGYC	1 cut(s)	1915
BsaI	GGTCTC	1 cut(s)	1842
BsaJI	CCNNGG	1 cut(s)	1669
BsaWI	WCCGGW	2 cut(s)	55, 1921
BsaXI	ACNNNNNCTCC	2 cut(s)	2030, 2060
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	3 cut(s)	1494, 2122, 2273
Bse3DI	GCAATG	1 cut(s)	2266
Bse8I	GATNNNNATC	1 cut(s)	1874
BseAI	TCCGGA	1 cut(s)	1921
BseBI	CCWGG	2 cut(s)	409, 1857
BseDI	CCNNGG	1 cut(s)	1669
BseGI	GGATG	6 cut(s)	52, 298, 601, 1003, 1918, 2003
BseJI	GATNNNNATC	1 cut(s)	1874
BseMI	GCAATG	1 cut(s)	2266
BseMII	CTCAG	4 cut(s)	853, 1017, 1224, 1602
BseNI	ACTGG	3 cut(s)	1494, 2122, 2273
BseRI	GAGGAG	5 cut(s)	285, 1454, 1891, 2039, 2051
BseSI	GKGCMC	1 cut(s)	1666
BseXI	GCAGC	5 cut(s)	460, 988, 1384, 1423, 1727
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	245
Bsh1236I	CGCG	3 cut(s)	23, 130, 132
BshFI	GGCC	7 cut(s)	119, 135, 252, 558, 1706, 1812, 1911
BsiHKAI	GWGCWC	3 cut(s)	229, 1666, 2031
BsiHKCI	CYCGRG	2 cut(s)	815, 1839
BsiSI	CCGG	8 cut(s)	56, 426, 559, 715, 933, 1042, 1129, 1922
BslFI	GGGAC	1 cut(s)	1103
BsmAI	GTCTC	5 cut(s)	319, 672, 1022, 1842, 2208
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	1 cut(s)	1103
BsmI	GAATGC	2 cut(s)	622, 1635
BsnI	GGCC	7 cut(s)	119, 135, 252, 558, 1706, 1812, 1911
Bso31I	GGTCTC	1 cut(s)	1842
BsoBI	CYCGRG	2 cut(s)	815, 1839
Bsp1286I	GDGCHC	4 cut(s)	229, 1644, 1666, 2031
Bsp13I	TCCGGA	1 cut(s)	1921
Bsp1407I	TGTACA	2 cut(s)	793, 1762
Bsp143I	GATC	7 cut(s)	649, 784, 985, 1275, 1555, 1673, 1875
BspANI	GGCC	7 cut(s)	119, 135, 252, 558, 1706, 1812, 1911
BspCNI	CTCAG	4 cut(s)	852, 1018, 1223, 1603
BspEI	TCCGGA	1 cut(s)	1921
BspFNI	CGCG	3 cut(s)	23, 130, 132
BspHI	TCATGA	1 cut(s)	2169
BspLI	GGNNCC	7 cut(s)	1091, 1092, 1300, 1504, 1641, 1740, 1854
BspMAI	CTGCAG	2 cut(s)	1402, 1413
BspMI	ACCTGC	2 cut(s)	93, 553
BspOI	GCTAGC	1 cut(s)	2069
BspPI	GGATC	2 cut(s)	1270, 1681
BspQI	GCTCTTC	1 cut(s)	1025
BspTNI	GGTCTC	1 cut(s)	1842
BsrBI	CCGCTC	2 cut(s)	416, 1087
BsrDI	GCAATG	1 cut(s)	2266
BsrFI	RCCGGY	1 cut(s)	558
BsrGI	TGTACA	2 cut(s)	793, 1762
BsrI	ACTGG	3 cut(s)	1494, 2122, 2273
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	1669
BssMI	GATC	7 cut(s)	649, 784, 985, 1275, 1555, 1673, 1875
BssNAI	GTATAC	1 cut(s)	1155
BssNI	GRCGYC	1 cut(s)	1915
BssT1I	CCWWGG	1 cut(s)	1669
Bst1107I	GTATAC	1 cut(s)	1155
Bst2UI	CCWGG	2 cut(s)	409, 1857
Bst4CI	ACNGT	6 cut(s)	827, 1010, 1258, 1701, 1968, 2225
Bst6I	CTCTTC	6 cut(s)	105, 164, 174, 218, 1025, 2016
BstACI	GRCGYC	1 cut(s)	1915
BstAPI	GCANNNNNTGC	1 cut(s)	1190
BstAUI	TGTACA	2 cut(s)	793, 1762
BstDEI	CTNAG	7 cut(s)	524, 839, 894, 1026, 1210, 1314, 1611
BstF5I	GGATG	6 cut(s)	52, 298, 601, 1003, 1918, 2003
BstFNI	CGCG	3 cut(s)	23, 130, 132
BstH2I	RGCGCY	2 cut(s)	152, 1204
BstHHI	GCGC	5 cut(s)	23, 132, 151, 967, 1203
BstKTI	GATC	7 cut(s)	652, 787, 988, 1278, 1558, 1676, 1878
BstMAI	GTCTC	5 cut(s)	319, 672, 1022, 1842, 2208
BstMBI	GATC	7 cut(s)	649, 784, 985, 1275, 1555, 1673, 1875
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 1190, 1403, 1639, 1712, 2157
BstNI	CCWGG	2 cut(s)	409, 1857
BstNSI	RCATGY	4 cut(s)	225, 274, 337, 690
BstSCI	CCNGG	7 cut(s)	407, 425, 713, 932, 1041, 1128, 1855
BstSFI	CTRYAG	2 cut(s)	1398, 1409
BstSLI	GKGCMC	1 cut(s)	1666
BstUI	CGCG	3 cut(s)	23, 130, 132
BstV1I	GCAGC	5 cut(s)	460, 988, 1384, 1423, 1727
BstX2I	RGATCY	1 cut(s)	985
BstYI	RGATCY	1 cut(s)	985
BstZ17I	GTATAC	1 cut(s)	1155
BsuRI	GGCC	7 cut(s)	119, 135, 252, 558, 1706, 1812, 1911
BtrI	CACGTC	1 cut(s)	767
BtsCI	GGATG	6 cut(s)	52, 298, 601, 1003, 1918, 2003
BtsI	GCAGTG	3 cut(s)	187, 960, 1406
BtsIMutI	CAGTG	4 cut(s)	187, 761, 960, 1406
BveI	ACCTGC	2 cut(s)	93, 553
CciI	TCATGA	1 cut(s)	2169
CfoI	GCGC	5 cut(s)	23, 132, 151, 967, 1203
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	5 cut(s)	118, 358, 411, 1090, 1810
CseI	GACGC	2 cut(s)	832, 1923
Csp6I	GTAC	7 cut(s)	337, 430, 566, 794, 1544, 1763, 2047
CviQI	GTAC	7 cut(s)	337, 430, 566, 794, 1544, 1763, 2047
DdeI	CTNAG	7 cut(s)	524, 839, 894, 1026, 1210, 1314, 1611
DpnI	GATC	7 cut(s)	651, 786, 987, 1277, 1557, 1675, 1877
DpnII	GATC	7 cut(s)	649, 784, 985, 1275, 1555, 1673, 1875
DraI	TTTAAA	2 cut(s)	1173, 2239
DrdI	GACNNNNNNGTC	1 cut(s)	311
DriI	GACNNNNNGTC	1 cut(s)	1035
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	3 cut(s)	133, 556, 1704
Eam1104I	CTCTTC	6 cut(s)	105, 164, 174, 218, 1025, 2016
Eam1105I	GACNNNNNGTC	1 cut(s)	1035
EarI	CTCTTC	6 cut(s)	105, 164, 174, 218, 1025, 2016
Eco130I	CCWWGG	1 cut(s)	1669
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	1644
Eco31I	GGTCTC	1 cut(s)	1842
Eco47I	GGWCC	3 cut(s)	358, 411, 1090
Eco47III	AGCGCT	1 cut(s)	150
Eco57I	CTGAAG	2 cut(s)	1116, 1748
Eco88I	CYCGRG	2 cut(s)	815, 1839
EcoO109I	RGGNCCY	1 cut(s)	1090
EcoRI	GAATTC	1 cut(s)	733
EcoRII	CCWGG	2 cut(s)	407, 1855
EcoT14I	CCWWGG	1 cut(s)	1669
EcoT22I	ATGCAT	1 cut(s)	1285
EcoT38I	GRGCYC	1 cut(s)	1644
ErhI	CCWWGG	1 cut(s)	1669
Esp3I	CGTCTC	1 cut(s)	672
FaqI	GGGAC	1 cut(s)	1103
FauI	CCCGC	5 cut(s)	374, 432, 1080, 1232, 1801
FauNDI	CATATG	2 cut(s)	1285, 2249
FbaI	TGATCA	2 cut(s)	649, 1555
FblI	GTMKAC	1 cut(s)	1154
Fnu4HI	GCNGC	8 cut(s)	117, 133, 474, 1002, 1297, 1398, 1412, 1716
FokI	GGATG	6 cut(s)	39, 285, 608, 1010, 1905, 1990
FriOI	GRGCYC	1 cut(s)	1644
Fsp4HI	GCNGC	8 cut(s)	117, 133, 474, 1002, 1297, 1398, 1412, 1716
FspBI	CTAG	3 cut(s)	390, 968, 2066
GlaI	GCGC	5 cut(s)	22, 131, 150, 966, 1202
GluI	GCNGC	8 cut(s)	117, 133, 474, 1002, 1297, 1398, 1412, 1716
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	3 cut(s)	1128, 1725, 1926
HaeII	RGCGCY	2 cut(s)	152, 1204
HaeIII	GGCC	7 cut(s)	119, 135, 252, 558, 1706, 1812, 1911
HapII	CCGG	8 cut(s)	56, 426, 559, 715, 933, 1042, 1129, 1922
HgaI	GACGC	2 cut(s)	832, 1923
HhaI	GCGC	5 cut(s)	23, 132, 151, 967, 1203
Hin1I	GRCGYC	1 cut(s)	1915
Hin6I	GCGC	5 cut(s)	21, 130, 149, 965, 1201
HinP1I	GCGC	5 cut(s)	21, 130, 149, 965, 1201
HincII	GTYRAC	1 cut(s)	1576
HindII	GTYRAC	1 cut(s)	1576
HindIII	AAGCTT	2 cut(s)	975, 1616
HinfI	GANTC	9 cut(s)	710, 718, 813, 1442, 1509, 1517, 1646, 1930, 2216
HpaII	CCGG	8 cut(s)	56, 426, 559, 715, 933, 1042, 1129, 1922
HphI	GGTGA	5 cut(s)	397, 1031, 1262, 1616, 1814
Hpy166II	GTNNAC	8 cut(s)	551, 568, 764, 1059, 1155, 1576, 1664, 2102
Hpy188I	TCNGA	6 cut(s)	985, 1027, 1084, 1789, 1880, 2144
Hpy8I	GTNNAC	8 cut(s)	551, 568, 764, 1059, 1155, 1576, 1664, 2102
Hpy99I	CGWCG	1 cut(s)	1917
HpyAV	CCTTC	4 cut(s)	1168, 1493, 1723, 1816
HpyCH4III	ACNGT	6 cut(s)	827, 1010, 1258, 1701, 1968, 2225
HpyCH4IV	ACGT	2 cut(s)	766, 1431
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 1190, 1403, 1639, 1712, 2157
HpyF3I	CTNAG	7 cut(s)	524, 839, 894, 1026, 1210, 1314, 1611
HpySE526I	ACGT	2 cut(s)	766, 1431
Hsp92I	GRCGYC	1 cut(s)	1915
HspAI	GCGC	5 cut(s)	21, 130, 149, 965, 1201
KflI	GGGWCCC	1 cut(s)	1090
Kpn2I	TCCGGA	1 cut(s)	1921
KroI	GCCGGC	1 cut(s)	558
KroNI	GCCGGC	1 cut(s)	560
Ksp22I	TGATCA	2 cut(s)	649, 1555
Kzo9I	GATC	7 cut(s)	649, 784, 985, 1275, 1555, 1673, 1875
LguI	GCTCTTC	1 cut(s)	1025
LmnI	GCTCC	6 cut(s)	1147, 1304, 1639, 1744, 2026, 2038
Lsp1109I	GCAGC	5 cut(s)	460, 988, 1384, 1423, 1727
LweI	GCATC	3 cut(s)	586, 988, 2189
MaeI	CTAG	3 cut(s)	390, 968, 2066
MaeII	ACGT	2 cut(s)	766, 1431
MaeIII	GTNAC	7 cut(s)	403, 889, 958, 1010, 1037, 1250, 1793
MalI	GATC	7 cut(s)	651, 786, 987, 1277, 1557, 1675, 1877
MbiI	CCGCTC	2 cut(s)	416, 1087
MboI	GATC	7 cut(s)	649, 784, 985, 1275, 1555, 1673, 1875
MfeI	CAATTG	3 cut(s)	454, 908, 2042
MflI	RGATCY	1 cut(s)	985
MhlI	GDGCHC	4 cut(s)	229, 1644, 1666, 2031
MlsI	TGGCCA	1 cut(s)	1706
MluNI	TGGCCA	1 cut(s)	1706
MlyI	GAGTC	3 cut(s)	807, 1511, 2210
MmeI	TCCRAC	2 cut(s)	268, 342
Mox20I	TGGCCA	1 cut(s)	1706
Mph1103I	ATGCAT	1 cut(s)	1285
MroI	TCCGGA	1 cut(s)	1921
MroNI	GCCGGC	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	1706
MseI	TTAA	6 cut(s)	972, 1172, 1434, 1862, 1970, 2238
MslI	CAYNNNNRTG	8 cut(s)	222, 332, 482, 629, 657, 807, 1284, 2055
Msp20I	TGGCCA	1 cut(s)	1706
MspA1I	CMGCKG	3 cut(s)	373, 439, 1718
MspI	CCGG	8 cut(s)	56, 426, 559, 715, 933, 1042, 1129, 1922
MspR9I	CCNGG	7 cut(s)	409, 427, 715, 934, 1043, 1130, 1857
MunI	CAATTG	3 cut(s)	454, 908, 2042
Mva1269I	GAATGC	2 cut(s)	622, 1635
MvaI	CCWGG	2 cut(s)	409, 1857
MvnI	CGCG	3 cut(s)	23, 130, 132
MwoI	GCNNNNNNNGC	6 cut(s)	122, 1190, 1403, 1639, 1712, 2157
NaeI	GCCGGC	1 cut(s)	560
NciI	CCSGG	5 cut(s)	427, 715, 934, 1043, 1130
NdeI	CATATG	2 cut(s)	1285, 2249
NdeII	GATC	7 cut(s)	649, 784, 985, 1275, 1555, 1673, 1875
NgoMIV	GCCGGC	1 cut(s)	558
NheI	GCTAGC	1 cut(s)	2065
NlaIV	GGNNCC	7 cut(s)	1091, 1092, 1300, 1504, 1641, 1740, 1854
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	4 cut(s)	403, 958, 1037, 1250
NsiI	ATGCAT	1 cut(s)	1285
NspI	RCATGY	4 cut(s)	225, 274, 337, 690
OliI	CACNNNNGTG	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	690
PaeR7I	CTCGAG	2 cut(s)	815, 1839
PagI	TCATGA	1 cut(s)	2169
PceI	AGGCCT	1 cut(s)	252
PciI	ACATGT	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	1025
PcsI	WCGNNNNNNNCGW	1 cut(s)	1594
PctI	GAATGC	2 cut(s)	622, 1635
PdiI	GCCGGC	1 cut(s)	560
PfeI	GAWTC	6 cut(s)	710, 718, 1442, 1509, 1646, 1930
PflFI	GACNNNGTC	1 cut(s)	1256
PfoI	TCCNGGA	1 cut(s)	713
PkrI	GCNGC	8 cut(s)	118, 134, 475, 1003, 1298, 1399, 1413, 1717
PleI	GAGTC	3 cut(s)	807, 1511, 2210
PpsI	GAGTC	3 cut(s)	807, 1511, 2210
PpuMI	RGGWCCY	1 cut(s)	1090
PscI	ACATGT	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	1937
Psp5II	RGGWCCY	1 cut(s)	1090
Psp6I	CCWGG	2 cut(s)	407, 1855
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	407, 1855
PspN4I	GGNNCC	7 cut(s)	1091, 1092, 1300, 1504, 1641, 1740, 1854
PspPI	GGNCC	5 cut(s)	118, 358, 411, 1090, 1810
PspPPI	RGGWCCY	1 cut(s)	1090
PspXI	VCTCGAGB	1 cut(s)	815
PstI	CTGCAG	2 cut(s)	1402, 1413
PsuI	RGATCY	1 cut(s)	985
PsyI	GACNNNGTC	1 cut(s)	1256
PvuII	CAGCTG	2 cut(s)	373, 1718
RsaI	GTAC	7 cut(s)	338, 431, 567, 795, 1545, 1764, 2048
RsaNI	GTAC	7 cut(s)	337, 430, 566, 794, 1544, 1763, 2047
RseI	CAYNNNNRTG	8 cut(s)	222, 332, 482, 629, 657, 807, 1284, 2055
SapI	GCTCTTC	1 cut(s)	1025
SaqAI	TTAA	6 cut(s)	972, 1172, 1434, 1862, 1970, 2238
SatI	GCNGC	8 cut(s)	117, 133, 474, 1002, 1297, 1398, 1412, 1716
Sau3AI	GATC	7 cut(s)	649, 784, 985, 1275, 1555, 1673, 1875
Sau96I	GGNCC	5 cut(s)	118, 358, 411, 1090, 1810
SchI	GAGTC	3 cut(s)	807, 1511, 2210
ScrFI	CCNGG	7 cut(s)	409, 427, 715, 934, 1043, 1130, 1857
SduI	GDGCHC	4 cut(s)	229, 1644, 1666, 2031
SfaNI	GCATC	3 cut(s)	586, 988, 2189
SfcI	CTRYAG	2 cut(s)	1398, 1409
Sfr274I	CTCGAG	2 cut(s)	815, 1839
SinI	GGWCC	3 cut(s)	358, 411, 1090
SlaI	CTCGAG	2 cut(s)	815, 1839
SmiMI	CAYNNNNRTG	8 cut(s)	222, 332, 482, 629, 657, 807, 1284, 2055
SmlI	CTYRAG	6 cut(s)	774, 815, 1224, 1370, 1526, 1839
SmoI	CTYRAG	6 cut(s)	774, 815, 1224, 1370, 1526, 1839
SphI	GCATGC	1 cut(s)	690
SseBI	AGGCCT	1 cut(s)	252
SspI	AATATT	1 cut(s)	1077
SspMI	CTAG	3 cut(s)	390, 968, 2066
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	7 cut(s)	407, 425, 713, 932, 1041, 1128, 1855
StyI	CCWWGG	1 cut(s)	1669
TaaI	ACNGT	6 cut(s)	827, 1010, 1258, 1701, 1968, 2225
TaiI	ACGT	2 cut(s)	769, 1434
TaqI	TCGA	5 cut(s)	378, 445, 816, 1588, 1840
TatI	WGTACW	2 cut(s)	793, 1762
TauI	GCSGC	3 cut(s)	119, 135, 1299
TfiI	GAWTC	6 cut(s)	710, 718, 1442, 1509, 1646, 1930
Tru1I	TTAA	6 cut(s)	972, 1172, 1434, 1862, 1970, 2238
Tru9I	TTAA	6 cut(s)	972, 1172, 1434, 1862, 1970, 2238
TscAI	CASTG	4 cut(s)	194, 761, 967, 1413
TseFI	GTSAC	4 cut(s)	403, 958, 1037, 1250
TseI	GCWGC	5 cut(s)	473, 1001, 1397, 1411, 1715
Tsp45I	GTSAC	4 cut(s)	403, 958, 1037, 1250
TspDTI	ATGAA	9 cut(s)	396, 1208, 1740, 1844, 2102, 2106, 2147, 2158, 2186
TspRI	CASTG	4 cut(s)	194, 761, 967, 1413
Tth111I	GACNNNGTC	1 cut(s)	1256
VneI	GTGCAC	1 cut(s)	1662
VpaK11BI	GGWCC	3 cut(s)	358, 411, 1090
XapI	RAATTY	3 cut(s)	344, 733, 1135
XceI	RCATGY	4 cut(s)	225, 274, 337, 690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2240
XhoI	CTCGAG	2 cut(s)	815, 1839
XmiI	GTMKAC	1 cut(s)	1154
XspI	CTAG	3 cut(s)	390, 968, 2066
Zsp2I	ATGCAT	1 cut(s)	1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.