Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

6029646 .. 6030035

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22461

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTTACCCACAACCCCATCACTCCTCATCCCGACCTTTTTGTCTCCAACCACCTCATCATCATGTACGCCAAATTTAGCTACCTAGACCATGCCCACCAACTGTTCGATGAAATGCCCAGGAGAAACCTCGTCACCTGGACCGCTCTCATTTCCGAGTACGCACAGCGGGGTCGATCTGAGGCTTGTTTTCGTTTATTTGCTGCCATGTTGGTGCATTACCTCCCGAATGAGTTTGCATTTTCCAGCGTGCTTAGTTCGTGTGCCGATAGTGATGGTGGATATGGCTGGCAGGTACACGCCCTCGCTTTGAAAATGTCTTTGGATGCTTGCCTTTGGATGTTGCCAATGCTCTCATTACCATGTACAGCAAGGTGTGTGATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

129

Amino Acids

14.68

Weight (kDa)

6.34

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	43 - 89	1.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	283
AccBSI	CCGCTC	1 cut(s)	146
AciI	CCGC	2 cut(s)	144, 169
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	4 cut(s)	68, 161, 297, 367
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	119, 137
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	26, 269
BciT130I	CCWGG	2 cut(s)	121, 139
BclI	TGATCA	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	2 cut(s)	121, 139
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	121, 139
BmsI	GCATC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	121, 139
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	3 cut(s)	28, 331, 345
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	49
Bsp1407I	TGTACA	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	176, 381
BspACI	CCGC	2 cut(s)	144, 169
BspCNI	CTCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	283
BsrBI	CCGCTC	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	2 cut(s)	176, 381
Bst2UI	CCWGG	2 cut(s)	121, 139
Bst4CI	ACNGT	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	251, 290, 331
BstDEI	CTNAG	2 cut(s)	180, 254
BstF5I	GGATG	3 cut(s)	28, 331, 345
BstKTI	GATC	2 cut(s)	179, 384
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	176, 381
BstNI	CCWGG	2 cut(s)	121, 139
BstSCI	CCNGG	2 cut(s)	119, 137
BstV1I	GCAGC	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	28, 331, 345
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	251, 290, 331
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	4 cut(s)	67, 160, 296, 366
CviAII	CATG	5 cut(s)	64, 92, 208, 363, 385
CviJI	RGCY	3 cut(s)	81, 185, 288
CviKI_1	RGCY	3 cut(s)	81, 185, 288
CviQI	GTAC	4 cut(s)	67, 160, 296, 366
DdeI	CTNAG	2 cut(s)	180, 254
DpnI	GATC	2 cut(s)	178, 383
DpnII	GATC	2 cut(s)	176, 381
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	119, 137
FaeI	CATG	5 cut(s)	67, 95, 211, 366, 388
FaiI	YATR	6 cut(s)	65, 93, 209, 285, 364, 386
FatI	CATG	5 cut(s)	63, 91, 207, 362, 384
FauI	CCCGC	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	3 cut(s)	15, 338, 352
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	204
Hin1II	CATG	5 cut(s)	67, 95, 211, 366, 388
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	157, 181
Hpy188III	TCNNGA	2 cut(s)	32, 226
Hpy8I	GTNNAC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	217, 239
HpyF3I	CTNAG	2 cut(s)	180, 254
Hsp92II	CATG	5 cut(s)	67, 95, 211, 366, 388
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	176, 381
LpnPI	CCDG	7 cut(s)	106, 124, 133, 151, 259, 274, 278
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	178, 383
MbiI	CCGCTC	1 cut(s)	146
MboI	GATC	2 cut(s)	176, 381
MluCI	AATT	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	36, 65, 140, 175, 233, 314
MslI	CAYNNNNRTG	3 cut(s)	62, 212, 361
MspA1I	CMGCKG	1 cut(s)	169
MspR9I	CCNGG	2 cut(s)	121, 139
MvaI	CCWGG	2 cut(s)	121, 139
NdeII	GATC	2 cut(s)	176, 381
NlaIII	CATG	5 cut(s)	67, 95, 211, 366, 388
NmuCI	GTSAC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	119, 137
PspGI	CCWGG	2 cut(s)	119, 137
PspPI	GGNCC	1 cut(s)	141
RsaI	GTAC	4 cut(s)	68, 161, 297, 367
RsaNI	GTAC	4 cut(s)	67, 160, 296, 366
RseI	CAYNNNNRTG	3 cut(s)	62, 212, 361
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	176, 381
Sau96I	GGNCC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	121, 139
SetI	ASST	9 cut(s)	39, 57, 83, 87, 132, 140, 225, 297, 377
SfaNI	GCATC	1 cut(s)	316
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	3 cut(s)	62, 212, 361
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	2 cut(s)	144, 169
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	119, 137
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	108, 175
TasI	AATT	1 cut(s)	74
TatI	WGTACW	1 cut(s)	365
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	1 cut(s)	74
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.