Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DYW_deaminase | PF14432 | 19 - 115 | 5.4e-37 | DYW family of nucleic acid deaminases |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 11 |
| AfaI | GTAC | 1 cut(s) | 122 |
| AgsI | TTSAA | 1 cut(s) | 269 |
| AluBI | AGCT | 3 cut(s) | 75, 139, 143 |
| AluI | AGCT | 3 cut(s) | 75, 139, 143 |
| Alw21I | GWGCWC | 1 cut(s) | 105 |
| Alw26I | GTCTC | 1 cut(s) | 282 |
| AsuNHI | GCTAGC | 1 cut(s) | 139 |
| Bbv12I | GWGCWC | 1 cut(s) | 105 |
| BccI | CCATC | 2 cut(s) | 132, 311 |
| BceAI | ACGGC | 1 cut(s) | 168 |
| BcoDI | GTCTC | 1 cut(s) | 282 |
| BfaI | CTAG | 1 cut(s) | 140 |
| BmsI | GCATC | 1 cut(s) | 263 |
| BmtI | GCTAGC | 1 cut(s) | 143 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 104, 134 |
| Bse1I | ACTGG | 2 cut(s) | 196, 347 |
| Bse3DI | GCAATG | 2 cut(s) | 178, 340 |
| BseGI | GGATG | 1 cut(s) | 77 |
| BseMI | GCAATG | 2 cut(s) | 178, 340 |
| BseNI | ACTGG | 2 cut(s) | 196, 347 |
| BseRI | GAGGAG | 2 cut(s) | 113, 125 |
| BsiHKAI | GWGCWC | 1 cut(s) | 105 |
| BsmAI | GTCTC | 1 cut(s) | 282 |
| Bsp1286I | GDGCHC | 1 cut(s) | 105 |
| BspHI | TCATGA | 1 cut(s) | 243 |
| BspOI | GCTAGC | 1 cut(s) | 143 |
| BsrDI | GCAATG | 2 cut(s) | 178, 340 |
| BsrI | ACTGG | 2 cut(s) | 196, 347 |
| Bst4CI | ACNGT | 2 cut(s) | 42, 299 |
| Bst6I | CTCTTC | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 1 cut(s) | 141 |
| BstF5I | GGATG | 1 cut(s) | 77 |
| BstMAI | GTCTC | 1 cut(s) | 282 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 231 |
| BtsCI | GGATG | 1 cut(s) | 77 |
| Cac8I | GCNNGC | 1 cut(s) | 141 |
| CciI | TCATGA | 1 cut(s) | 243 |
| Csp6I | GTAC | 1 cut(s) | 121 |
| CviAII | CATG | 2 cut(s) | 86, 244 |
| CviJI | RGCY | 3 cut(s) | 75, 139, 143 |
| CviKI_1 | RGCY | 3 cut(s) | 75, 139, 143 |
| CviQI | GTAC | 1 cut(s) | 121 |
| DraI | TTTAAA | 1 cut(s) | 313 |
| Eam1104I | CTCTTC | 1 cut(s) | 90 |
| EarI | CTCTTC | 1 cut(s) | 90 |
| FaeI | CATG | 2 cut(s) | 89, 247 |
| FatI | CATG | 2 cut(s) | 85, 243 |
| FauNDI | CATATG | 1 cut(s) | 323 |
| FokI | GGATG | 1 cut(s) | 64 |
| FspBI | CTAG | 1 cut(s) | 140 |
| Hin1II | CATG | 2 cut(s) | 89, 247 |
| HinfI | GANTC | 2 cut(s) | 4, 290 |
| Hpy166II | GTNNAC | 1 cut(s) | 176 |
| Hpy188I | TCNGA | 1 cut(s) | 218 |
| Hpy188III | TCNNGA | 2 cut(s) | 65, 244 |
| Hpy8I | GTNNAC | 1 cut(s) | 176 |
| HpyCH4III | ACNGT | 2 cut(s) | 42, 299 |
| HpyCH4V | TGCA | 2 cut(s) | 85, 333 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 231 |
| Hsp92II | CATG | 2 cut(s) | 89, 247 |
| LmnI | GCTCC | 2 cut(s) | 100, 112 |
| LpnPI | CCDG | 3 cut(s) | 78, 177, 328 |
| LweI | GCATC | 1 cut(s) | 263 |
| MaeI | CTAG | 1 cut(s) | 140 |
| MboII | GAAGA | 2 cut(s) | 107, 220 |
| MfeI | CAATTG | 1 cut(s) | 116 |
| MhlI | GDGCHC | 1 cut(s) | 105 |
| MluCI | AATT | 2 cut(s) | 51, 116 |
| MlyI | GAGTC | 1 cut(s) | 284 |
| MnlI | CCTC | 2 cut(s) | 91, 103 |
| MseI | TTAA | 2 cut(s) | 44, 312 |
| MunI | CAATTG | 1 cut(s) | 116 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 231 |
| NdeI | CATATG | 1 cut(s) | 323 |
| NheI | GCTAGC | 1 cut(s) | 139 |
| NlaIII | CATG | 2 cut(s) | 89, 247 |
| PagI | TCATGA | 1 cut(s) | 243 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PleI | GAGTC | 1 cut(s) | 284 |
| PpsI | GAGTC | 1 cut(s) | 284 |
| PsiI | TTATAA | 1 cut(s) | 11 |
| RsaI | GTAC | 1 cut(s) | 122 |
| RsaNI | GTAC | 1 cut(s) | 121 |
| SaqAI | TTAA | 2 cut(s) | 44, 312 |
| SchI | GAGTC | 1 cut(s) | 284 |
| SduI | GDGCHC | 1 cut(s) | 105 |
| SetI | ASST | 3 cut(s) | 77, 141, 145 |
| SfaNI | GCATC | 1 cut(s) | 263 |
| SgeI | CNNG | 9 cut(s) | 77, 84, 94, 98, 152, 204, 238, 256, 342 |
| Sse9I | AATT | 2 cut(s) | 51, 116 |
| SspMI | CTAG | 1 cut(s) | 140 |
| TaaI | ACNGT | 2 cut(s) | 42, 299 |
| TasI | AATT | 2 cut(s) | 51, 116 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 2 cut(s) | 44, 312 |
| Tru9I | TTAA | 2 cut(s) | 44, 312 |
| TspDTI | ATGAA | 6 cut(s) | 17, 176, 180, 221, 232, 260 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 314 |
| XspI | CTAG | 1 cut(s) | 140 |