Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

66696209 .. 66697989

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGTTGCTGCATCACCTCCCGAATGAGTTTGCATTTGCCAGCGTACTAAGTTCGTGTGCCGATAGTGATGGGGAATATGGCCGGCAGCAAGGTGTGTTAGACGTTAGTAGAGACGAGGCATGGAAGGTGTTTACAAGCATGGAATCCCGGAATCTTATATCCTGGAATTCCATGATTGCAGGGTTTCAGTGTCGTGGACTTGGAGCTCAAGCTATTGATCTGTTTGTACAAATGCACGTTGATGGACTTGACTTTGACCGTGCCACACTTCTCAGCGTCTTATCTTCCTTGAATGGAGTAAATGGCATTGATGATATAGTGGTCACTAAGTTTTGTTATCAACTGCATTGTCTGGTTATCAAAACAGGGTTTATATTAGGAATTGAGGTGGTCACTGCATTAGTTAAAGCTTATTCAGATCTTGGAGGGGATGCTGCTGACTGTTACAGACTCTTCTCTGAGACAAGCTGTCATCGGGATATTGCAGCGTGGACAGGCATTATGACAATATTTTCCGAGCGGGATCCTGAAGAAGCACTCTCCCTTTTTCGTCAATTACGCAGGGAGAATTTAGCTCCAGACAGGTATACCTTCTCAATTGTTTTAAAAGCCTATGCAAGCCTTGCAACCCAGCGCCATGCCTCGGCTGTTCATTCGCAAGTGATCAAAGGTGGGTTTGGGGGTGACACAGTCCTTGCAAACGCCTTGATCCATGCATATGCTCGGTGCGGCTCCATTTCCTTGTCTAAGCAAATTTTTGATGGAATTGAGTTTCGTGATGTTGTTTCTTGGAACACAATGCTCAAGGCTTATGCCTTGTATGGACAAGCTACAGAGGCACTGCAGCTTTTTACACAAATGGACATTAAACCTGATTCTGCTACCTTTGTTTCTCTCCTTTGTGCTTGTAGCCATGCTGGACTGGTAGAAGAAGGAACCAGAATCTTTGACTCCATGCTTGAAAGATATGGAATTGTACCTCTATGTGATCATTATGCATGCATGGTTGACATTCTTGGTCGAGCGGGACGAGTTGGTGAGGCTAAGAAGCTTGTAAGTAGAATGCCAATGGAGCCCGATTCCGTAGTTTGGAGTGCACTCCTTGGATCATGTAGGAAGCATGGAAATACACAGTTGGCCAAGTTAGCAGCTGATAGACTGAAGGAGTTGGCTCCAGAGGGTTCATTAGTTTATGTACAAATGTCAAACATATATAGCTCTGATGGTAACTTTGGTGAAGCGGGCCTAATTAGGAAGGAAATGAAAGGGTCTCGAGTGAAAAAGGAACCTGGATTAAGCTGGATTGAGATTGGAAATCAGGTGCATGAGTTCTCCTCTGGAGGCCGACGCCATCCAGAGAGGACTCTTATTAGCAGAAAACTAAAAGAACTGATTGGACGGTTAAGGGAAATTGGTTATGTTCCAGATACAAGCTCATCCTTGCATGATGTGGAAGAGGAGCACAAAGAGGAGCAATTGCACCATCATAGTGAGAAGCTAGCTTTAGTGTTTGCCATTATGAATGAAAGCAGTTTACATTGCGGTAGGACTGGTATAAAAATAATGAAGAATATCAGAGTATGCGTGGATTGCCACAACTTCATGAAGTTAGCATCAAATCTACTTCAAAAGGATATTGTTGTGAGAGACTCAAACCGTTTCCACCACTTTAAAGATGGCATATGTTCTTGCAATGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

569

Amino Acids

63.22

Weight (kDa)

6.35

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	160 - 206	2.9e-07	PPR repeat family
PPR_2	PF13041	259 - 304	1.4e-08	PPR repeat family
E_motif	PF20431	374 - 436	4.7e-15	E motif
DYW_deaminase	PF14432	472 - 568	3.3e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	520, 1025
AccI	GTMKAC	1 cut(s)	587
AciI	CCGC	5 cut(s)	520, 729, 1025, 1241, 1542
AclWI	GGATC	4 cut(s)	518, 531, 703, 1114
AcoI	YGGCCR	2 cut(s)	79, 1137
AcsI	RAATTY	3 cut(s)	166, 568, 753
AcuI	CTGAAG	2 cut(s)	549, 1181
AcyI	GRCGYC	1 cut(s)	1348
AfaI	GTAC	4 cut(s)	45, 228, 978, 1197
AfiI	CCNNNNNNNGG	2 cut(s)	643, 1089
AgsI	TTSAA	3 cut(s)	292, 962, 1628
AhdI	GACNNNNNGTC	1 cut(s)	468
AjnI	CCWGG	2 cut(s)	161, 1288
Alw21I	GWGCWC	3 cut(s)	208, 1099, 1464
Alw26I	GTCTC	4 cut(s)	105, 455, 1275, 1641
Alw44I	GTGCAC	1 cut(s)	1095
AlwI	GGATC	4 cut(s)	518, 531, 703, 1114
Ama87I	CYCGRG	1 cut(s)	1272
AoxI	GGCC	4 cut(s)	79, 1137, 1243, 1342
ApaLI	GTGCAC	1 cut(s)	1095
ApeKI	GCWGC	6 cut(s)	7, 85, 434, 485, 844, 1148
ApoI	RAATTY	3 cut(s)	166, 568, 753
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	1 cut(s)	1243
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	4 cut(s)	5, 695, 1049, 1247
AsuNHI	GCTAGC	1 cut(s)	1498
AvaI	CYCGRG	1 cut(s)	1272
BaeGI	GKGCMC	1 cut(s)	1099
BalI	TGGCCA	1 cut(s)	1139
BamHI	GGATCC	1 cut(s)	523
BanII	GRGCYC	2 cut(s)	208, 1077
Bbv12I	GWGCWC	3 cut(s)	208, 1099, 1464
BbvI	GCAGC	5 cut(s)	97, 421, 497, 856, 1160
BccI	CCATC	7 cut(s)	62, 236, 755, 1217, 1359, 1491, 1670
BciT130I	CCWGG	2 cut(s)	163, 1290
BclI	TGATCA	2 cut(s)	663, 988
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	4 cut(s)	105, 455, 1275, 1641
BfaI	CTAG	1 cut(s)	1499
BfmI	CTRYAG	2 cut(s)	831, 842
BfoI	RGCGCY	1 cut(s)	637
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	7 cut(s)	8, 86, 435, 486, 730, 845, 1149
BlsI	GCNGC	7 cut(s)	9, 87, 436, 487, 731, 846, 1150
Bme1390I	CCNGG	3 cut(s)	148, 163, 1290
BmeRI	GACNNNNNGTC	1 cut(s)	468
BmeT110I	CYCGRG	1 cut(s)	1272
BmgT120I	GGNCC	1 cut(s)	1243
BmiI	GGNNCC	6 cut(s)	525, 733, 937, 1074, 1173, 1287
BmrFI	CCNGG	3 cut(s)	148, 163, 1290
BmsI	GCATC	3 cut(s)	19, 421, 1622
BmtI	GCTAGC	1 cut(s)	1502
BplI	GAGNNNNNCTC	2 cut(s)	1319, 1351
BpmI	CTGGAG	3 cut(s)	561, 1158, 1359
BpuEI	CTTGAG	2 cut(s)	192, 788
BpuMI	CCSGG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	1348
BsaI	GGTCTC	1 cut(s)	1275
BsaJI	CCNNGG	2 cut(s)	642, 1102
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 1089
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	3 cut(s)	927, 1555, 1706
Bse3DI	GCAATG	2 cut(s)	1537, 1699
BseBI	CCWGG	2 cut(s)	163, 1290
BseDI	CCNNGG	2 cut(s)	642, 1102
BseGI	GGATG	3 cut(s)	436, 1351, 1436
BseLI	CCNNNNNNNGG	2 cut(s)	643, 1089
BseMI	GCAATG	2 cut(s)	1537, 1699
BseMII	CTCAG	2 cut(s)	286, 450
BseNI	ACTGG	3 cut(s)	927, 1555, 1706
BseRI	GAGGAG	3 cut(s)	1324, 1472, 1484
BseSI	GKGCMC	1 cut(s)	1099
BseXI	GCAGC	5 cut(s)	97, 421, 497, 856, 1160
BseYI	CCCAGC	1 cut(s)	630
BshFI	GGCC	4 cut(s)	81, 1139, 1245, 1344
BsiHKAI	GWGCWC	3 cut(s)	208, 1099, 1464
BsiHKCI	CYCGRG	1 cut(s)	1272
BsiSI	CCGG	2 cut(s)	82, 148
BslFI	GGGAC	1 cut(s)	1041
BslI	CCNNNNNNNGG	2 cut(s)	643, 1089
BsmAI	GTCTC	4 cut(s)	105, 455, 1275, 1641
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	1041
BsmI	GAATGC	1 cut(s)	1068
BsnI	GGCC	4 cut(s)	81, 1139, 1245, 1344
Bso31I	GGTCTC	1 cut(s)	1275
BsoBI	CYCGRG	1 cut(s)	1272
Bsp1286I	GDGCHC	4 cut(s)	208, 1077, 1099, 1464
Bsp1407I	TGTACA	2 cut(s)	226, 1195
Bsp143I	GATC	7 cut(s)	217, 418, 523, 663, 708, 988, 1106
BspACI	CCGC	5 cut(s)	520, 729, 1025, 1241, 1542
BspANI	GGCC	4 cut(s)	81, 1139, 1245, 1344
BspCNI	CTCAG	2 cut(s)	285, 451
BspHI	TCATGA	1 cut(s)	1602
BspLI	GGNNCC	6 cut(s)	525, 733, 937, 1074, 1173, 1287
BspMAI	CTGCAG	1 cut(s)	846
BspOI	GCTAGC	1 cut(s)	1502
BspPI	GGATC	4 cut(s)	518, 531, 703, 1114
BspTNI	GGTCTC	1 cut(s)	1275
BsrBI	CCGCTC	2 cut(s)	520, 1025
BsrDI	GCAATG	2 cut(s)	1537, 1699
BsrFI	RCCGGY	1 cut(s)	81
BsrGI	TGTACA	2 cut(s)	226, 1195
BsrI	ACTGG	3 cut(s)	927, 1555, 1706
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	642, 1102
BssMI	GATC	7 cut(s)	217, 418, 523, 663, 708, 988, 1106
BssNAI	GTATAC	1 cut(s)	588
BssNI	GRCGYC	1 cut(s)	1348
BssT1I	CCWWGG	1 cut(s)	1102
Bst1107I	GTATAC	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	163, 1290
Bst4CI	ACNGT	6 cut(s)	260, 443, 691, 1134, 1401, 1658
Bst6I	CTCTTC	2 cut(s)	458, 1449
BstACI	GRCGYC	1 cut(s)	1348
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstAUI	TGTACA	2 cut(s)	226, 1195
BstC8I	GCNNGC	6 cut(s)	40, 83, 619, 1000, 1243, 1500
BstDEI	CTNAG	6 cut(s)	47, 272, 327, 459, 747, 1044
BstF5I	GGATG	3 cut(s)	436, 1351, 1436
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	7 cut(s)	220, 421, 526, 666, 711, 991, 1109
BstMAI	GTCTC	4 cut(s)	105, 455, 1275, 1641
BstMBI	GATC	7 cut(s)	217, 418, 523, 663, 708, 988, 1106
BstMWI	GCNNNNNNNGC	5 cut(s)	623, 836, 1072, 1145, 1590
BstNI	CCWGG	2 cut(s)	163, 1290
BstNSI	RCATGY	1 cut(s)	1002
BstSCI	CCNGG	3 cut(s)	146, 161, 1288
BstSFI	CTRYAG	2 cut(s)	831, 842
BstSLI	GKGCMC	1 cut(s)	1099
BstV1I	GCAGC	5 cut(s)	97, 421, 497, 856, 1160
BstX2I	RGATCY	2 cut(s)	418, 523
BstYI	RGATCY	2 cut(s)	418, 523
BstZ17I	GTATAC	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	81, 1139, 1245, 1344
BtsCI	GGATG	3 cut(s)	436, 1351, 1436
BtsI	GCAGTG	2 cut(s)	393, 839
BtsIMutI	CAGTG	3 cut(s)	194, 393, 839
Cac8I	GCNNGC	6 cut(s)	40, 83, 619, 1000, 1243, 1500
CciI	TCATGA	1 cut(s)	1602
CfoI	GCGC	1 cut(s)	636
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	1243
CseI	GACGC	2 cut(s)	265, 1356
Csp6I	GTAC	4 cut(s)	44, 227, 977, 1196
CviQI	GTAC	4 cut(s)	44, 227, 977, 1196
DdeI	CTNAG	6 cut(s)	47, 272, 327, 459, 747, 1044
DpnI	GATC	7 cut(s)	219, 420, 525, 665, 710, 990, 1108
DpnII	GATC	7 cut(s)	217, 418, 523, 663, 708, 988, 1106
DraI	TTTAAA	2 cut(s)	606, 1672
DriI	GACNNNNNGTC	1 cut(s)	468
EaeI	YGGCCR	2 cut(s)	79, 1137
Eam1104I	CTCTTC	2 cut(s)	458, 1449
Eam1105I	GACNNNNNGTC	1 cut(s)	468
EarI	CTCTTC	2 cut(s)	458, 1449
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	1102
Eco24I	GRGCYC	2 cut(s)	208, 1077
Eco31I	GGTCTC	1 cut(s)	1275
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	549, 1181
Eco88I	CYCGRG	1 cut(s)	1272
EcoICRI	GAGCTC	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	161, 1288
EcoT14I	CCWWGG	1 cut(s)	1102
EcoT22I	ATGCAT	3 cut(s)	718, 1000, 1004
EcoT38I	GRGCYC	2 cut(s)	208, 1077
ErhI	CCWWGG	1 cut(s)	1102
Esp3I	CGTCTC	1 cut(s)	105
FaqI	GGGAC	1 cut(s)	1041
FauI	CCCGC	3 cut(s)	513, 1018, 1234
FauNDI	CATATG	2 cut(s)	718, 1682
FbaI	TGATCA	2 cut(s)	663, 988
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	7 cut(s)	8, 86, 435, 486, 730, 845, 1149
FokI	GGATG	3 cut(s)	443, 1338, 1423
FriOI	GRGCYC	2 cut(s)	208, 1077
Fsp4HI	GCNGC	7 cut(s)	8, 86, 435, 486, 730, 845, 1149
FspBI	CTAG	1 cut(s)	1499
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	7 cut(s)	8, 86, 435, 486, 730, 845, 1149
GsaI	CCCAGC	1 cut(s)	634
GsuI	CTGGAG	3 cut(s)	561, 1158, 1359
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	4 cut(s)	81, 1139, 1245, 1344
HapII	CCGG	2 cut(s)	82, 148
HgaI	GACGC	2 cut(s)	265, 1356
HhaI	GCGC	1 cut(s)	636
Hin1I	GRCGYC	1 cut(s)	1348
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HincII	GTYRAC	1 cut(s)	1009
HindII	GTYRAC	1 cut(s)	1009
HindIII	AAGCTT	2 cut(s)	408, 1049
HinfI	GANTC	9 cut(s)	143, 151, 450, 875, 942, 950, 1079, 1363, 1649
HpaII	CCGG	2 cut(s)	82, 148
HphI	GGTGA	4 cut(s)	5, 695, 1049, 1247
Hpy166II	GTNNAC	7 cut(s)	132, 197, 492, 588, 1009, 1097, 1535
Hpy188I	TCNGA	5 cut(s)	418, 460, 517, 1222, 1577
Hpy8I	GTNNAC	7 cut(s)	132, 197, 492, 588, 1009, 1097, 1535
Hpy99I	CGWCG	1 cut(s)	1350
HpyAV	CCTTC	5 cut(s)	118, 601, 926, 1156, 1249
HpyCH4III	ACNGT	6 cut(s)	260, 443, 691, 1134, 1401, 1658
HpyCH4IV	ACGT	2 cut(s)	102, 237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	623, 836, 1072, 1145, 1590
HpyF3I	CTNAG	6 cut(s)	47, 272, 327, 459, 747, 1044
HpySE526I	ACGT	2 cut(s)	102, 237
Hsp92I	GRCGYC	1 cut(s)	1348
HspAI	GCGC	1 cut(s)	634
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Ksp22I	TGATCA	2 cut(s)	663, 988
Kzo9I	GATC	7 cut(s)	217, 418, 523, 663, 708, 988, 1106
LmnI	GCTCC	7 cut(s)	203, 580, 737, 1072, 1177, 1459, 1471
Lsp1109I	GCAGC	5 cut(s)	97, 421, 497, 856, 1160
LweI	GCATC	3 cut(s)	19, 421, 1622
MaeI	CTAG	1 cut(s)	1499
MaeII	ACGT	2 cut(s)	102, 237
MaeIII	GTNAC	5 cut(s)	322, 391, 443, 683, 1226
MalI	GATC	7 cut(s)	219, 420, 525, 665, 710, 990, 1108
MbiI	CCGCTC	2 cut(s)	520, 1025
MboI	GATC	7 cut(s)	217, 418, 523, 663, 708, 988, 1106
MboII	GAAGA	6 cut(s)	276, 445, 542, 941, 1466, 1579
MfeI	CAATTG	2 cut(s)	597, 1475
MflI	RGATCY	2 cut(s)	418, 523
MhlI	GDGCHC	4 cut(s)	208, 1077, 1099, 1464
MlsI	TGGCCA	1 cut(s)	1139
MluNI	TGGCCA	1 cut(s)	1139
MlyI	GAGTC	4 cut(s)	444, 944, 1357, 1643
Mox20I	TGGCCA	1 cut(s)	1139
Mph1103I	ATGCAT	3 cut(s)	718, 1000, 1004
MroNI	GCCGGC	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	1139
MseI	TTAA	6 cut(s)	405, 605, 867, 1295, 1403, 1671
MslI	CAYNNNNRTG	3 cut(s)	240, 717, 1488
Msp20I	TGGCCA	1 cut(s)	1139
MspA1I	CMGCKG	1 cut(s)	1151
MspI	CCGG	2 cut(s)	82, 148
MspR9I	CCNGG	3 cut(s)	148, 163, 1290
MunI	CAATTG	2 cut(s)	597, 1475
Mva1269I	GAATGC	1 cut(s)	1068
MvaI	CCWGG	2 cut(s)	163, 1290
MwoI	GCNNNNNNNGC	5 cut(s)	623, 836, 1072, 1145, 1590
NaeI	GCCGGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	148
NdeI	CATATG	2 cut(s)	718, 1682
NdeII	GATC	7 cut(s)	217, 418, 523, 663, 708, 988, 1106
NgoMIV	GCCGGC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	1498
NlaIV	GGNNCC	6 cut(s)	525, 733, 937, 1074, 1173, 1287
NmeAIII	GCCGAG	1 cut(s)	623
NmuCI	GTSAC	3 cut(s)	322, 391, 683
NsiI	ATGCAT	3 cut(s)	718, 1000, 1004
NspI	RCATGY	1 cut(s)	1002
PaeI	GCATGC	1 cut(s)	1002
PaeR7I	CTCGAG	1 cut(s)	1272
PagI	TCATGA	1 cut(s)	1602
PcsI	WCGNNNNNNNCGW	1 cut(s)	1027
PctI	GAATGC	1 cut(s)	1068
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	5 cut(s)	143, 151, 875, 942, 1079
PflFI	GACNNNGTC	1 cut(s)	689
PfoI	TCCNGGA	2 cut(s)	146, 161
PkrI	GCNGC	7 cut(s)	9, 87, 436, 487, 731, 846, 1150
PleI	GAGTC	4 cut(s)	444, 944, 1357, 1643
PpsI	GAGTC	4 cut(s)	444, 944, 1357, 1643
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	161, 1288
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	2 cut(s)	161, 1288
PspN4I	GGNNCC	6 cut(s)	525, 733, 937, 1074, 1173, 1287
PspPI	GGNCC	1 cut(s)	1243
PstI	CTGCAG	1 cut(s)	846
PsuI	RGATCY	2 cut(s)	418, 523
PsyI	GACNNNGTC	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	1151
RsaI	GTAC	4 cut(s)	45, 228, 978, 1197
RsaNI	GTAC	4 cut(s)	44, 227, 977, 1196
RseI	CAYNNNNRTG	3 cut(s)	240, 717, 1488
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	6 cut(s)	405, 605, 867, 1295, 1403, 1671
SatI	GCNGC	7 cut(s)	8, 86, 435, 486, 730, 845, 1149
Sau3AI	GATC	7 cut(s)	217, 418, 523, 663, 708, 988, 1106
Sau96I	GGNCC	1 cut(s)	1243
SchI	GAGTC	4 cut(s)	444, 944, 1357, 1643
ScrFI	CCNGG	3 cut(s)	148, 163, 1290
SduI	GDGCHC	4 cut(s)	208, 1077, 1099, 1464
SfaNI	GCATC	3 cut(s)	19, 421, 1622
SfcI	CTRYAG	2 cut(s)	831, 842
Sfr274I	CTCGAG	1 cut(s)	1272
SlaI	CTCGAG	1 cut(s)	1272
SmiMI	CAYNNNNRTG	3 cut(s)	240, 717, 1488
SmlI	CTYRAG	3 cut(s)	207, 803, 1272
SmoI	CTYRAG	3 cut(s)	207, 803, 1272
SphI	GCATGC	1 cut(s)	1002
SsiI	CCGC	5 cut(s)	520, 729, 1025, 1241, 1542
SspI	AATATT	1 cut(s)	510
SspMI	CTAG	1 cut(s)	1499
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	3 cut(s)	146, 161, 1288
StyI	CCWWGG	1 cut(s)	1102
TaaI	ACNGT	6 cut(s)	260, 443, 691, 1134, 1401, 1658
TaiI	ACGT	2 cut(s)	105, 240
TaqI	TCGA	2 cut(s)	1021, 1273
TatI	WGTACW	2 cut(s)	226, 1195
TauI	GCSGC	1 cut(s)	732
TfiI	GAWTC	5 cut(s)	143, 151, 875, 942, 1079
Tru1I	TTAA	6 cut(s)	405, 605, 867, 1295, 1403, 1671
Tru9I	TTAA	6 cut(s)	405, 605, 867, 1295, 1403, 1671
TscAI	CASTG	3 cut(s)	194, 400, 846
TseFI	GTSAC	3 cut(s)	322, 391, 683
TseI	GCWGC	6 cut(s)	7, 85, 434, 485, 844, 1148
Tsp45I	GTSAC	3 cut(s)	322, 391, 683
TspDTI	ATGAA	8 cut(s)	641, 1173, 1277, 1535, 1539, 1580, 1591, 1619
TspGWI	ACGGA	1 cut(s)	1072
TspRI	CASTG	3 cut(s)	194, 400, 846
Tth111I	GACNNNGTC	1 cut(s)	689
VneI	GTGCAC	1 cut(s)	1095
XapI	RAATTY	3 cut(s)	166, 568, 753
XceI	RCATGY	1 cut(s)	1002
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1673
XhoI	CTCGAG	1 cut(s)	1272
XmiI	GTMKAC	1 cut(s)	587
XspI	CTAG	1 cut(s)	1499
Zsp2I	ATGCAT	3 cut(s)	718, 1000, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.