Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

6046096 .. 6046740

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22468

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCCAATGGAGCCTGATTCTGTAGTTTGGAGTGCACTCCTTGGATCATGTAGGAAGCATGGAAATACACAGTTGGCCAAGTTAGCAGCTGATAGACTGAAGGAGTTGGCTCCAGAGGATTCATTAGTTTATGTACAAATGTTAAACATATATAGCTCTGATGGTGACTTTGGTGAAGCGGGCCTAATGAGGAAGGAAATGAAAGGGTCTCGAGTGAAAAAGGAACCTGGATTAAGCTGGATTGAGATCGGAAATCAGGTGCATGAGTTCTCCTCTGGAGGCCGACGCCATCCAGGAACGAATCTTATAAGCAGAAAACTAAAAGAACTGATTGGACAGTTGAGGGAAATTGGTTATATTCCAGATACAAGCTCATCCTTGCATGATGTGGAAGAGGAGCACAAAGAGGAGCAATTGTACCATCATAGTGAGAAGCTAGCTTTAGTGTTTGCCATTATGAATGAAAGCAGTTTACATTGCGGTAGGACTGGTATAAAAATAATGAAGAATATCAGAGTATGCGTGGATTGCCATAACTTCATGAAGTTAGCATCAAATCTACTTCACAAGGATATTGTTGTGAGAGACACAAACCGTTTCCACCACTTTAAAGATGGCATATGCTCTTGCAATGATTACCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

214

Amino Acids

24.29

Weight (kDa)

7.19

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	20 - 82	1.2e-14	E motif
DYW_deaminase	PF14432	118 - 213	7.1e-35	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AciI	CCGC	2 cut(s)	179, 480
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	2 cut(s)	135, 419
AgeI	ACCGGT	1 cut(s)	639
AjnI	CCWGG	2 cut(s)	226, 292
AluBI	AGCT	6 cut(s)	89, 156, 237, 372, 436, 440
AluI	AGCT	6 cut(s)	89, 156, 237, 372, 436, 440
Alw21I	GWGCWC	2 cut(s)	37, 402
Alw26I	GTCTC	2 cut(s)	213, 579
Alw44I	GTGCAC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	3 cut(s)	75, 181, 280
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	86
AsiGI	ACCGGT	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	176, 185
AsuNHI	GCTAGC	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	37, 402
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	4 cut(s)	155, 297, 429, 608
BciT130I	CCWGG	2 cut(s)	228, 294
BcoDI	GTCTC	2 cut(s)	213, 579
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	228, 294
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	3 cut(s)	12, 111, 225
BmrFI	CCNGG	2 cut(s)	228, 294
BmsI	GCATC	1 cut(s)	560
BmtI	GCTAGC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpmI	CTGGAG	2 cut(s)	96, 297
BsaBI	GATNNNNATC	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	639
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bse118I	RCCGGY	1 cut(s)	639
Bse1I	ACTGG	1 cut(s)	493
Bse3DI	GCAATG	2 cut(s)	475, 637
Bse8I	GATNNNNATC	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	228, 294
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	2 cut(s)	289, 374
BseJI	GATNNNNATC	1 cut(s)	245
BseMI	GCAATG	2 cut(s)	475, 637
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	3 cut(s)	262, 410, 422
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	98
BshFI	GGCC	3 cut(s)	77, 183, 282
BshTI	ACCGGT	1 cut(s)	639
BsiHKAI	GWGCWC	2 cut(s)	37, 402
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	640
BsmAI	GTCTC	2 cut(s)	213, 579
BsnI	GGCC	3 cut(s)	77, 183, 282
Bso31I	GGTCTC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	37, 402
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	44, 246
BspACI	CCGC	2 cut(s)	179, 480
BspANI	GGCC	3 cut(s)	77, 183, 282
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	3 cut(s)	12, 111, 225
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	213
BsrDI	GCAATG	2 cut(s)	475, 637
BsrFI	RCCGGY	1 cut(s)	639
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	44, 246
BssNI	GRCGYC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	228, 294
Bst4CI	ACNGT	3 cut(s)	72, 339, 596
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	286
BstAUI	TGTACA	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	181, 438
BstF5I	GGATG	2 cut(s)	289, 374
BstKTI	GATC	2 cut(s)	47, 249
BstMAI	GTCTC	2 cut(s)	213, 579
BstMBI	GATC	2 cut(s)	44, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 83, 528
BstNI	CCWGG	2 cut(s)	228, 294
BstSCI	CCNGG	2 cut(s)	226, 292
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	98
BsuRI	GGCC	3 cut(s)	77, 183, 282
BtsCI	GGATG	2 cut(s)	289, 374
Cac8I	GCNNGC	2 cut(s)	181, 438
CciI	TCATGA	1 cut(s)	540
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	134, 418
CspAI	ACCGGT	1 cut(s)	639
CviAII	CATG	5 cut(s)	48, 59, 263, 383, 541
CviQI	GTAC	2 cut(s)	134, 418
DpnI	GATC	2 cut(s)	46, 248
DpnII	GATC	2 cut(s)	44, 246
DraI	TTTAAA	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	226, 292
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	5 cut(s)	51, 62, 266, 386, 544
FatI	CATG	5 cut(s)	47, 58, 262, 382, 540
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	620
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	276, 361
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	2 cut(s)	96, 297
HaeIII	GGCC	3 cut(s)	77, 183, 282
HapII	CCGG	1 cut(s)	640
HgaI	GACGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	5 cut(s)	51, 62, 266, 386, 544
HinfI	GANTC	3 cut(s)	17, 119, 301
HpaII	CCGG	1 cut(s)	640
HphI	GGTGA	2 cut(s)	176, 185
Hpy166II	GTNNAC	2 cut(s)	35, 473
Hpy188I	TCNGA	3 cut(s)	160, 251, 515
Hpy188III	TCNNGA	5 cut(s)	113, 210, 276, 362, 541
Hpy8I	GTNNAC	2 cut(s)	35, 473
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	2 cut(s)	94, 187
HpyCH4III	ACNGT	3 cut(s)	72, 339, 596
HpyCH4V	TGCA	4 cut(s)	35, 262, 382, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 83, 528
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	5 cut(s)	51, 62, 266, 386, 544
Kzo9I	GATC	2 cut(s)	44, 246
LmnI	GCTCC	4 cut(s)	10, 115, 397, 409
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	46, 248
MboI	GATC	2 cut(s)	44, 246
MboII	GAAGA	2 cut(s)	404, 517
MfeI	CAATTG	1 cut(s)	413
MhlI	GDGCHC	2 cut(s)	37, 402
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	2 cut(s)	348, 413
MluNI	TGGCCA	1 cut(s)	77
MnlI	CCTC	7 cut(s)	109, 183, 272, 283, 336, 388, 400
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	3 cut(s)	143, 233, 609
MslI	CAYNNNNRTG	1 cut(s)	426
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	640
MspR9I	CCNGG	2 cut(s)	228, 294
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	2 cut(s)	228, 294
MwoI	GCNNNNNNNGC	3 cut(s)	10, 83, 528
NdeI	CATATG	1 cut(s)	620
NdeII	GATC	2 cut(s)	44, 246
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	5 cut(s)	51, 62, 266, 386, 544
NlaIV	GGNNCC	3 cut(s)	12, 111, 225
NmuCI	GTSAC	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	210
PagI	TCATGA	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	17, 119, 301
PfoI	TCCNGGA	1 cut(s)	292
PinAI	ACCGGT	1 cut(s)	639
PkrI	GCNGC	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	226, 292
PspGI	CCWGG	2 cut(s)	226, 292
PspN4I	GGNNCC	3 cut(s)	12, 111, 225
PspPI	GGNCC	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	2 cut(s)	135, 419
RsaNI	GTAC	2 cut(s)	134, 418
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	143, 233, 609
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	44, 246
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	228, 294
SduI	GDGCHC	2 cut(s)	37, 402
SetI	ASST	8 cut(s)	91, 158, 229, 239, 261, 374, 438, 442
SfaNI	GCATC	1 cut(s)	560
SfcI	CTRYAG	1 cut(s)	21
Sfr274I	CTCGAG	1 cut(s)	210
SlaI	CTCGAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	2 cut(s)	348, 413
SsiI	CCGC	2 cut(s)	179, 480
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	226, 292
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	72, 339, 596
TaqI	TCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	348, 413
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	3 cut(s)	17, 119, 301
Tru1I	TTAA	3 cut(s)	143, 233, 609
Tru9I	TTAA	3 cut(s)	143, 233, 609
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	7 cut(s)	111, 215, 473, 477, 518, 529, 557
VneI	GTGCAC	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XhoI	CTCGAG	1 cut(s)	210
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.