Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

67438559 .. 67439380

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTCAAGGCTTATGCCTTGTATGGACAAGCTGCAGTTGCCTTGCATGGACAAGCTGCAGAGGCACTGCAGCTTTTTTCACAAATGGACATTAAACCTGAATCTGCTACCTTTGTTTCTCTCCTCTGTGCTTGTAGTCATGCTGGACTGGTAGAAGAAGGAACCAGAATCTTTGACTCCATGCTTAAGAGATATGAAATTGTACCTCTATGTGATCATTATGCATGCATGGTTGACATTCTTGGTCGAGCGGGACGAGTTGGTGAGGCTGAGAAGCTTCTGAGTAGAATGCCAATGAAGCCCGATTCCGTGGTTTGGAGTGCACTCCTTGGATCGTGTAGGAAGCATGGAAATACACAGTTGGCCAAGTTAGCAGCTGATAGACTGAAGGAGTTGGCTCCAGAGGGTTCATTAGTTTATGTACAAATGTCAAATATATATAGCTCTGATGGTAACTTTGGTGAAGCGGGCTTAATTAGGAAGGAAATGAAAGGGTCTCGAGTGAAAAAGGAACCTGGATTAAGCTGGATTGAGATCGGAAATCAGGTGCATGAGTTCTCCTCTGGAGGCCGACGCCATCCAGAAAGGACTCTTATAAGCAGAAAACTAAAAGAACTGATTGGATGGTTGAGGGAAATTGGTTATGTTCCAGATACAAGCTCATCCTTGCATGATGTGGAAGAGGAGCACAAAGAGGAGCAGCTGTACCATCATAGTGAGAAGCTAGCCTTAGTGTTTGCTATTATGAATGAAAGCAGTTTACATTGTGGTAGGACTGCTGTAAAAATAATGAAGAATATCAGAGTATGCGTGCATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

274

Amino Acids

30.37

Weight (kDa)

7.67

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	116 - 178	1.5e-15	E motif
DYW_deaminase	PF14432	214 - 270	6.8e-13	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	251
AciI	CCGC	2 cut(s)	251, 467
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	574
AfaI	GTAC	3 cut(s)	204, 423, 707
AfiI	CCNNNNNNNGG	1 cut(s)	315
AflII	CTTAAG	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	514
Alw21I	GWGCWC	2 cut(s)	325, 690
Alw26I	GTCTC	1 cut(s)	501
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	2 cut(s)	363, 568
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	5 cut(s)	32, 56, 70, 374, 700
AsuHPI	GGTGA	2 cut(s)	275, 473
AsuNHI	GCTAGC	1 cut(s)	724
AvaI	CYCGRG	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	365
Bbv12I	GWGCWC	2 cut(s)	325, 690
BbvI	GCAGC	5 cut(s)	19, 43, 82, 386, 712
BccI	CCATC	4 cut(s)	443, 585, 618, 717
BciT130I	CCWGG	1 cut(s)	516
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	3 cut(s)	33, 57, 68
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	5 cut(s)	33, 57, 71, 375, 701
BlsI	GCNGC	5 cut(s)	34, 58, 72, 376, 702
Bme1390I	CCNGG	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	498
BmiI	GGNNCC	3 cut(s)	163, 399, 513
BmrFI	CCNGG	1 cut(s)	516
BmtI	GCTAGC	1 cut(s)	728
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
BpmI	CTGGAG	2 cut(s)	384, 585
BsaBI	GATNNNNATC	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	309, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	309, 328
BseGI	GGATG	4 cut(s)	577, 629, 662, 814
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	261, 272
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	4 cut(s)	113, 550, 698, 710
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	5 cut(s)	19, 43, 82, 386, 712
BshFI	GGCC	2 cut(s)	365, 570
BsiHKAI	GWGCWC	2 cut(s)	325, 690
BsiHKCI	CYCGRG	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	365, 570
Bso31I	GGTCTC	1 cut(s)	501
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	325, 690
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	214, 332, 534
BspACI	CCGC	2 cut(s)	251, 467
BspANI	GGCC	2 cut(s)	365, 570
BspCNI	CTCAG	2 cut(s)	262, 273
BspLI	GGNNCC	3 cut(s)	163, 399, 513
BspMAI	CTGCAG	3 cut(s)	37, 61, 72
BspOI	GCTAGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	340
BspTI	CTTAAG	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	501
BsrBI	CCGCTC	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	309, 328
BssMI	GATC	3 cut(s)	214, 332, 534
BssNI	GRCGYC	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	1 cut(s)	574
BstAFI	CTTAAG	1 cut(s)	185
BstAUI	TGTACA	1 cut(s)	421
BstC8I	GCNNGC	4 cut(s)	226, 469, 726, 812
BstDEI	CTNAG	3 cut(s)	270, 281, 730
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	577, 629, 662, 814
BstKTI	GATC	3 cut(s)	217, 335, 537
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	3 cut(s)	214, 332, 534
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 62, 298, 371
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	3 cut(s)	33, 57, 68
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	5 cut(s)	19, 43, 82, 386, 712
BsuRI	GGCC	2 cut(s)	365, 570
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	577, 629, 662, 814
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	4 cut(s)	226, 469, 726, 812
CseI	GACGC	1 cut(s)	582
Csp6I	GTAC	3 cut(s)	203, 422, 706
CviAII	CATG	8 cut(s)	47, 140, 181, 225, 229, 347, 551, 671
CviQI	GTAC	3 cut(s)	203, 422, 706
DdeI	CTNAG	3 cut(s)	270, 281, 730
DpnI	GATC	3 cut(s)	216, 334, 536
DpnII	GATC	3 cut(s)	214, 332, 534
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	328
Eco31I	GGTCTC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	328
EcoT22I	ATGCAT	2 cut(s)	226, 230
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	8 cut(s)	50, 143, 184, 228, 232, 350, 554, 674
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	8 cut(s)	46, 139, 180, 224, 228, 346, 550, 670
FauI	CCCGC	2 cut(s)	244, 460
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	5 cut(s)	33, 57, 71, 375, 701
FokI	GGATG	4 cut(s)	564, 636, 649, 801
Fsp4HI	GCNGC	5 cut(s)	33, 57, 71, 375, 701
FspBI	CTAG	1 cut(s)	725
GluI	GCNGC	5 cut(s)	33, 57, 71, 375, 701
GsuI	CTGGAG	2 cut(s)	384, 585
HaeIII	GGCC	2 cut(s)	365, 570
HgaI	GACGC	1 cut(s)	582
Hin1I	GRCGYC	1 cut(s)	574
Hin1II	CATG	8 cut(s)	50, 143, 184, 228, 232, 350, 554, 674
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	5 cut(s)	101, 168, 176, 305, 589
HphI	GGTGA	2 cut(s)	275, 473
Hpy166II	GTNNAC	3 cut(s)	235, 323, 761
Hpy188I	TCNGA	4 cut(s)	282, 448, 539, 803
Hpy188III	TCNNGA	5 cut(s)	401, 498, 564, 581, 650
Hpy8I	GTNNAC	3 cut(s)	235, 323, 761
Hpy99I	CGWCG	1 cut(s)	576
HpyAV	CCTTC	3 cut(s)	152, 382, 475
HpyCH4III	ACNGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 62, 298, 371
HpyF3I	CTNAG	3 cut(s)	270, 281, 730
Hsp92I	GRCGYC	1 cut(s)	574
Hsp92II	CATG	8 cut(s)	50, 143, 184, 228, 232, 350, 554, 674
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	214, 332, 534
LmnI	GCTCC	3 cut(s)	403, 685, 697
Lsp1109I	GCAGC	5 cut(s)	19, 43, 82, 386, 712
MaeI	CTAG	1 cut(s)	725
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	3 cut(s)	216, 334, 536
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	3 cut(s)	214, 332, 534
MboII	GAAGA	3 cut(s)	167, 692, 805
MhlI	GDGCHC	2 cut(s)	325, 690
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	3 cut(s)	198, 474, 636
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	2 cut(s)	170, 583
Mox20I	TGGCCA	1 cut(s)	365
Mph1103I	ATGCAT	2 cut(s)	226, 230
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	4 cut(s)	93, 186, 473, 521
MslI	CAYNNNNRTG	1 cut(s)	714
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	377, 703
MspCI	CTTAAG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	4 cut(s)	38, 62, 298, 371
NdeII	GATC	3 cut(s)	214, 332, 534
NheI	GCTAGC	1 cut(s)	724
NlaIII	CATG	8 cut(s)	50, 143, 184, 228, 232, 350, 554, 674
NlaIV	GGNNCC	3 cut(s)	163, 399, 513
NsiI	ATGCAT	2 cut(s)	226, 230
NspI	RCATGY	1 cut(s)	228
PaeI	GCATGC	1 cut(s)	228
PaeR7I	CTCGAG	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PctI	GAATGC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	101, 168, 305
PkrI	GCNGC	5 cut(s)	34, 58, 72, 376, 702
PleI	GAGTC	2 cut(s)	170, 583
PpsI	GAGTC	2 cut(s)	170, 583
PsiI	TTATAA	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	163, 399, 513
PstI	CTGCAG	3 cut(s)	37, 61, 72
PvuII	CAGCTG	2 cut(s)	377, 703
RsaI	GTAC	3 cut(s)	204, 423, 707
RsaNI	GTAC	3 cut(s)	203, 422, 706
RseI	CAYNNNNRTG	1 cut(s)	714
SaqAI	TTAA	4 cut(s)	93, 186, 473, 521
SatI	GCNGC	5 cut(s)	33, 57, 71, 375, 701
Sau3AI	GATC	3 cut(s)	214, 332, 534
SchI	GAGTC	2 cut(s)	170, 583
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	2 cut(s)	325, 690
SfcI	CTRYAG	3 cut(s)	33, 57, 68
Sfr274I	CTCGAG	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	3 cut(s)	5, 185, 498
SmoI	CTYRAG	3 cut(s)	5, 185, 498
SphI	GCATGC	1 cut(s)	228
Sse9I	AATT	3 cut(s)	198, 474, 636
SsiI	CCGC	2 cut(s)	251, 467
SspMI	CTAG	1 cut(s)	725
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	247, 499
TasI	AATT	3 cut(s)	198, 474, 636
TatI	WGTACW	1 cut(s)	421
TfiI	GAWTC	3 cut(s)	101, 168, 305
Tru1I	TTAA	4 cut(s)	93, 186, 473, 521
Tru9I	TTAA	4 cut(s)	93, 186, 473, 521
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	5 cut(s)	32, 56, 70, 374, 700
TspDTI	ATGAA	7 cut(s)	210, 311, 399, 503, 761, 765, 806
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	72
Vha464I	CTTAAG	1 cut(s)	185
VneI	GTGCAC	1 cut(s)	321
XceI	RCATGY	1 cut(s)	228
XhoI	CTCGAG	1 cut(s)	498
XspI	CTAG	1 cut(s)	725
Zsp2I	ATGCAT	2 cut(s)	226, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.