Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001209.1

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

125650 .. 126228

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001209.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgaagcgctctcactcttcaaccgccaccatctcaaactcactgcaaccaaacctacgccactctcttccacgcatgtgctcgccaccactccctccaacaaggcctctatctcctcatcccgacctctttgtctccaaccacctcatcaacatgtacgccaaatctggctacttagactatgcccaccaactgttcgatgaaatgcccagaagaaacctcgtcacctggaccgctctcatttccctgtacgcacagcggagtcgagctgacaatggttttcgtttatttgctgcaatgttggtgtattacctcccgaatgagtttgcatttgccagcgtgctaagttcatgtgacgatagtgatggtggatatggccggcaggtacatgccctcgctttgaaaatgtctttggatgcttgcgtttacgttgcgaatgctctcattaccatgtatagcaaggtgtgtgatcatggaggtgtgtttgatgttagtagagacgaggcgtggaaggtgtttcgaagcacggaatcccggaatcttatatcgtggaattccatgctctcattgtcacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

192

Amino Acids

21.64

Weight (kDa)

8.71

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	236
AciI	CCGC	3 cut(s)	24, 234, 259
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	553
AfaI	GTAC	3 cut(s)	158, 251, 387
AfeI	AGCGCT	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	21, 403
AjnI	CCWGG	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AleI	CACNNNNGTG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	139, 492
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	2 cut(s)	104, 376
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	553
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	38, 359
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	139, 492
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	229, 535
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	229, 535
BmsI	GCATC	1 cut(s)	406
Bpu14I	TTCGAA	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	535
Bse118I	RCCGGY	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	118, 421
BseMI	GCAATG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	106, 378
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	379, 535
BsmAI	GTCTC	2 cut(s)	139, 492
BsmBI	CGTCTC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	106, 378
Bsp119I	TTCGAA	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	3 cut(s)	24, 234, 259
BspANI	GGCC	2 cut(s)	106, 378
BspMI	ACCTGC	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	520
BsrBI	CCGCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	378
BssMI	GATC	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	2 cut(s)	22, 72
BstBI	TTCGAA	1 cut(s)	520
BstC8I	GCNNGC	5 cut(s)	83, 337, 341, 380, 421
BstDEI	CTNAG	2 cut(s)	175, 344
BstF5I	GGATG	2 cut(s)	118, 421
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	139, 492
BstMBI	GATC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	3 cut(s)	79, 157, 392
BstSCI	CCNGG	2 cut(s)	227, 533
BstV1I	GCAGC	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	106, 378
BtsCI	GGATG	2 cut(s)	118, 421
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	5 cut(s)	83, 337, 341, 380, 421
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	157, 250, 386
CviAII	CATG	7 cut(s)	76, 154, 351, 389, 451, 473, 559
CviJI	RGCY	4 cut(s)	106, 171, 269, 378
CviKI_1	RGCY	4 cut(s)	106, 171, 269, 378
CviQI	GTAC	3 cut(s)	157, 250, 386
DdeI	CTNAG	2 cut(s)	175, 344
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	22, 72
EarI	CTCTTC	2 cut(s)	22, 72
Eco147I	AGGCCT	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	227
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	7 cut(s)	79, 157, 354, 392, 454, 476, 562
FatI	CATG	7 cut(s)	75, 153, 350, 388, 450, 472, 558
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	2 cut(s)	105, 428
Fsp4HI	GCNGC	1 cut(s)	294
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	106, 378
HapII	CCGG	2 cut(s)	379, 535
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	7 cut(s)	79, 157, 354, 392, 454, 476, 562
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	3 cut(s)	262, 530, 538
HpaII	CCGG	2 cut(s)	379, 535
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188III	TCNNGA	2 cut(s)	122, 316
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	3 cut(s)	46, 296, 329
HpyF3I	CTNAG	2 cut(s)	175, 344
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	7 cut(s)	79, 157, 354, 392, 454, 476, 562
HspAI	GCGC	1 cut(s)	7
KroI	GCCGGC	1 cut(s)	378
KroNI	GCCGGC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	469
LpnPI	CCDG	9 cut(s)	153, 214, 223, 241, 260, 349, 368, 392, 548
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	406
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	3 cut(s)	223, 353, 570
MalI	GATC	1 cut(s)	471
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	1 cut(s)	469
MboII	GAAGA	3 cut(s)	9, 59, 225
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	553
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	122, 162
MroNI	GCCGGC	1 cut(s)	378
MslI	CAYNNNNRTG	4 cut(s)	76, 152, 449, 477
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	2 cut(s)	379, 535
MspR9I	CCNGG	2 cut(s)	229, 535
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	229
NaeI	GCCGGC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	535
NdeII	GATC	1 cut(s)	469
NgoMIV	GCCGGC	1 cut(s)	378
NlaIII	CATG	7 cut(s)	79, 157, 354, 392, 454, 476, 562
NmuCI	GTSAC	3 cut(s)	223, 353, 570
NspI	RCATGY	3 cut(s)	79, 157, 392
NspV	TTCGAA	1 cut(s)	520
OliI	CACNNNNGTG	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	106
PciI	ACATGT	1 cut(s)	153
PctI	GAATGC	1 cut(s)	442
PdiI	GCCGGC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	530, 538
PfoI	TCCNGGA	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PscI	ACATGT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	3 cut(s)	158, 251, 387
RsaNI	GTAC	3 cut(s)	157, 250, 386
RseI	CAYNNNNRTG	4 cut(s)	76, 152, 449, 477
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	229, 535
SduI	GDGCHC	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	406
SfuI	TTCGAA	1 cut(s)	520
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	4 cut(s)	76, 152, 449, 477
Sse9I	AATT	1 cut(s)	553
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	24, 234, 259
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	2 cut(s)	227, 533
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	3 cut(s)	198, 265, 520
TasI	AATT	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	530, 538
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	3 cut(s)	223, 353, 570
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	3 cut(s)	223, 353, 570
TspDTI	ATGAA	3 cut(s)	17, 216, 339
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	3 cut(s)	79, 157, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.