Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031313.1

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

1834 .. 2599

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031313.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 766 bp

atgctacgcccatgtggtcgcgcgtgtcatagagccttcacctcaatcaaccatccggttcttcccacacctccccgcctcaacctgcaaacaaataaccttctcggcgaagtaggggccctggccacgcgcggccaactcaacgaagcactctcactcttctacgctcttcaaactcactgcaaccaaacctacgccactctcttccacgcatgtgctcgccaccactccctccaacaaggcctctccttgcaccattacatggtcgcccacaaccccattactcctcatcccgacctctttgtctccaaccacctcatcaacatgtacgccaaatttggctacttagaccgtgcccaccgactgttcgatgaaatgcccagaagaaacctcgtcacctggaccgctctcatttccgggtacgcacagcggggtcgagctgacaattgttttcgtttattttcttccatgttgacgcattacctcccgaatgagtttgcttttgccagcgtgctaagttcgtgtgccgatagcgatggtggacgtggccggcaggtacacgccctcgctttgaaaatgtctttggatgcttgcgtttacgttgcaaatgctctcattaccatgtacagcaaggtgtgtgatcatggaggtgtgtttgatgttagtagagacgaggcgtggaagatgtttagaagcatggaatcccggaatcttatatcgtggaattccatgattgcagggtttcagtgtcgtggacgtggagctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

255

Amino Acids

28.66

Weight (kDa)

9.16

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
Acc36I	ACCTGC	2 cut(s)	93, 544
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	407
AccII	CGCG	4 cut(s)	21, 23, 130, 132
AciI	CCGC	4 cut(s)	76, 132, 405, 430
AcoI	YGGCCR	3 cut(s)	123, 133, 547
AcsI	RAATTY	2 cut(s)	335, 724
AfaI	GTAC	4 cut(s)	329, 422, 558, 626
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	173, 574
AjiI	CACGTC	2 cut(s)	545, 758
AjnI	CCWGG	2 cut(s)	120, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	2 cut(s)	440, 764
AluI	AGCT	2 cut(s)	440, 764
Alw21I	GWGCWC	2 cut(s)	220, 766
Alw26I	GTCTC	2 cut(s)	310, 663
AoxI	GGCC	5 cut(s)	117, 123, 133, 241, 547
ApaI	GGGCCC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	335, 724
AspLEI	GCGC	2 cut(s)	23, 132
AspS9I	GGNCC	3 cut(s)	117, 118, 402
AsuC2I	CCSGG	2 cut(s)	418, 706
AsuHPI	GGTGA	2 cut(s)	31, 388
AvaII	GGWCC	1 cut(s)	402
BaeGI	GKGCMC	2 cut(s)	121, 358
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	121, 766
Bbv12I	GWGCWC	2 cut(s)	220, 766
BccI	CCATC	2 cut(s)	60, 530
BciT130I	CCWGG	2 cut(s)	122, 400
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	2 cut(s)	418, 706
BcoDI	GTCTC	2 cut(s)	310, 663
BfuAI	ACCTGC	2 cut(s)	93, 544
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	4 cut(s)	122, 400, 418, 706
Bme18I	GGWCC	1 cut(s)	402
BmgBI	CACGTC	2 cut(s)	545, 758
BmgT120I	GGNCC	3 cut(s)	117, 118, 402
BmiI	GGNNCC	2 cut(s)	118, 119
BmrFI	CCNGG	4 cut(s)	122, 400, 418, 706
BmsI	GCATC	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	418, 706
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse118I	RCCGGY	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	122, 400
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	3 cut(s)	52, 289, 592
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	2 cut(s)	121, 358
Bsh1236I	CGCG	4 cut(s)	21, 23, 130, 132
BshFI	GGCC	5 cut(s)	119, 125, 135, 243, 549
BsiHKAI	GWGCWC	2 cut(s)	220, 766
BsiSI	CCGG	4 cut(s)	56, 417, 550, 706
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	310, 663
BsmBI	CGTCTC	1 cut(s)	663
BsnI	GGCC	5 cut(s)	119, 125, 135, 243, 549
Bsp120I	GGGCCC	1 cut(s)	117
Bsp1286I	GDGCHC	4 cut(s)	121, 220, 358, 766
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	1 cut(s)	640
BspACI	CCGC	4 cut(s)	76, 132, 405, 430
BspANI	GGCC	5 cut(s)	119, 125, 135, 243, 549
BspFNI	CGCG	4 cut(s)	21, 23, 130, 132
BspLI	GGNNCC	2 cut(s)	118, 119
BspMI	ACCTGC	2 cut(s)	93, 544
BspQI	GCTCTTC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	549
BsrGI	TGTACA	1 cut(s)	624
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	640
Bst2UI	CCWGG	2 cut(s)	122, 400
Bst4CI	ACNGT	2 cut(s)	353, 366
Bst6I	CTCTTC	3 cut(s)	164, 174, 209
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	5 cut(s)	220, 508, 512, 551, 592
BstDEI	CTNAG	2 cut(s)	346, 515
BstF5I	GGATG	3 cut(s)	52, 289, 592
BstFNI	CGCG	4 cut(s)	21, 23, 130, 132
BstHHI	GCGC	2 cut(s)	23, 132
BstKTI	GATC	1 cut(s)	643
BstMAI	GTCTC	2 cut(s)	310, 663
BstMBI	GATC	1 cut(s)	640
BstNI	CCWGG	2 cut(s)	122, 400
BstNSI	RCATGY	2 cut(s)	216, 328
BstSCI	CCNGG	4 cut(s)	120, 398, 416, 704
BstSLI	GKGCMC	2 cut(s)	121, 358
BstUI	CGCG	4 cut(s)	21, 23, 130, 132
BsuRI	GGCC	5 cut(s)	119, 125, 135, 243, 549
BtgZI	GCGATG	1 cut(s)	549
BtrI	CACGTC	2 cut(s)	545, 758
BtsCI	GGATG	3 cut(s)	52, 289, 592
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	178, 752
BveI	ACCTGC	2 cut(s)	93, 544
Cac8I	GCNNGC	5 cut(s)	220, 508, 512, 551, 592
CfoI	GCGC	2 cut(s)	23, 132
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	3 cut(s)	117, 118, 402
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	4 cut(s)	328, 421, 557, 625
CviAII	CATG	9 cut(s)	12, 213, 262, 325, 469, 622, 644, 697, 730
CviJI	RGCY	9 cut(s)	35, 119, 125, 135, 243, 342, 440, 549, 764
CviKI_1	RGCY	9 cut(s)	35, 119, 125, 135, 243, 342, 440, 549, 764
CviQI	GTAC	4 cut(s)	328, 421, 557, 625
DdeI	CTNAG	2 cut(s)	346, 515
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	3 cut(s)	123, 133, 547
Eam1104I	CTCTTC	3 cut(s)	164, 174, 209
EarI	CTCTTC	3 cut(s)	164, 174, 209
Ecl136II	GAGCTC	1 cut(s)	764
Eco147I	AGGCCT	1 cut(s)	243
Eco24I	GRGCYC	2 cut(s)	121, 766
Eco47I	GGWCC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	764
EcoICRI	GAGCTC	1 cut(s)	764
EcoO109I	RGGNCCY	2 cut(s)	117, 118
EcoRI	GAATTC	1 cut(s)	724
EcoRII	CCWGG	2 cut(s)	120, 398
EcoT38I	GRGCYC	2 cut(s)	121, 766
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	9 cut(s)	15, 216, 265, 328, 472, 625, 647, 700, 733
FatI	CATG	9 cut(s)	11, 212, 261, 324, 468, 621, 643, 696, 729
FauI	CCCGC	2 cut(s)	83, 423
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	3 cut(s)	39, 276, 599
FriOI	GRGCYC	2 cut(s)	121, 766
Fsp4HI	GCNGC	1 cut(s)	133
GlaI	GCGC	2 cut(s)	22, 131
GluI	GCNGC	1 cut(s)	133
HaeIII	GGCC	5 cut(s)	119, 125, 135, 243, 549
HapII	CCGG	4 cut(s)	56, 417, 550, 706
HgaI	GACGC	1 cut(s)	484
HhaI	GCGC	2 cut(s)	23, 132
Hin1II	CATG	9 cut(s)	15, 216, 265, 328, 472, 625, 647, 700, 733
Hin6I	GCGC	2 cut(s)	21, 130
HinP1I	GCGC	2 cut(s)	21, 130
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HinfI	GANTC	2 cut(s)	701, 709
HpaII	CCGG	4 cut(s)	56, 417, 550, 706
HphI	GGTGA	2 cut(s)	31, 388
Hpy166II	GTNNAC	5 cut(s)	474, 542, 559, 598, 755
Hpy188III	TCNNGA	2 cut(s)	293, 487
Hpy8I	GTNNAC	5 cut(s)	474, 542, 559, 598, 755
HpyAV	CCTTC	2 cut(s)	46, 110
HpyCH4III	ACNGT	2 cut(s)	353, 366
HpyCH4IV	ACGT	3 cut(s)	544, 600, 757
HpyCH4V	TGCA	5 cut(s)	88, 183, 253, 605, 737
HpyF3I	CTNAG	2 cut(s)	346, 515
HpySE526I	ACGT	3 cut(s)	544, 600, 757
Hsp92II	CATG	9 cut(s)	15, 216, 265, 328, 472, 625, 647, 700, 733
HspAI	GCGC	2 cut(s)	21, 130
KroI	GCCGGC	1 cut(s)	549
KroNI	GCCGGC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	1 cut(s)	640
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	761
LweI	GCATC	1 cut(s)	577
MaeII	ACGT	3 cut(s)	544, 600, 757
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	1 cut(s)	642
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	1 cut(s)	640
MboII	GAAGA	7 cut(s)	53, 151, 161, 196, 396, 456, 694
MfeI	CAATTG	1 cut(s)	445
MhlI	GDGCHC	4 cut(s)	121, 220, 358, 766
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	3 cut(s)	335, 445, 724
MluNI	TGGCCA	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	259, 333
Mox20I	TGGCCA	1 cut(s)	125
MroNI	GCCGGC	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	125
MslI	CAYNNNNRTG	4 cut(s)	213, 323, 620, 648
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	4 cut(s)	56, 417, 550, 706
MspR9I	CCNGG	4 cut(s)	122, 400, 418, 706
MunI	CAATTG	1 cut(s)	445
MvaI	CCWGG	2 cut(s)	122, 400
MvnI	CGCG	4 cut(s)	21, 23, 130, 132
NaeI	GCCGGC	1 cut(s)	551
NciI	CCSGG	2 cut(s)	418, 706
NdeII	GATC	1 cut(s)	640
NgoMIV	GCCGGC	1 cut(s)	549
NlaIII	CATG	9 cut(s)	15, 216, 265, 328, 472, 625, 647, 700, 733
NlaIV	GGNNCC	2 cut(s)	118, 119
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	394
NspI	RCATGY	2 cut(s)	216, 328
OliI	CACNNNNGTG	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	243
PciI	ACATGT	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	551
PfeI	GAWTC	2 cut(s)	701, 709
PflMI	CCANNNNNTGG	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	704
PkrI	GCNGC	1 cut(s)	134
PscI	ACATGT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	766
Psp6I	CCWGG	2 cut(s)	120, 398
PspGI	CCWGG	2 cut(s)	120, 398
PspN4I	GGNNCC	2 cut(s)	118, 119
PspOMI	GGGCCC	1 cut(s)	117
PspPI	GGNCC	3 cut(s)	117, 118, 402
RsaI	GTAC	4 cut(s)	329, 422, 558, 626
RsaNI	GTAC	4 cut(s)	328, 421, 557, 625
RseI	CAYNNNNRTG	4 cut(s)	213, 323, 620, 648
SacI	GAGCTC	1 cut(s)	766
SapI	GCTCTTC	1 cut(s)	174
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	3 cut(s)	117, 118, 402
ScrFI	CCNGG	4 cut(s)	122, 400, 418, 706
SduI	GDGCHC	4 cut(s)	121, 220, 358, 766
SfaNI	GCATC	1 cut(s)	577
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	4 cut(s)	213, 323, 620, 648
Sse9I	AATT	3 cut(s)	335, 445, 724
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	4 cut(s)	76, 132, 405, 430
SstI	GAGCTC	1 cut(s)	766
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	120, 398, 416, 704
TaaI	ACNGT	2 cut(s)	353, 366
TaiI	ACGT	3 cut(s)	547, 603, 760
TaqI	TCGA	2 cut(s)	369, 436
TasI	AATT	3 cut(s)	335, 445, 724
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	701, 709
TscAI	CASTG	2 cut(s)	185, 752
TseFI	GTSAC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	2 cut(s)	185, 752
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	335, 724
XceI	RCATGY	2 cut(s)	216, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.