Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001209.1

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

33260 .. 34575

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001209.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgcttgcccacaaccccatcactcctcatcccgacctctttgtctccaaccacctcaccaacatgtacgccaaattcggctacttagacgatgcccaccagctgttcgatgaaatgcccagaagaaatctcgtcacctggaccgctctcatttccgggtacgcacagcggggtcgatctgaggcttgttttcatttatttgctgcaatgttggtgtattacctcccgaatgagtttgcatttgccagcgtgctaagttcgtgtgccggtagcaatggtggatatggtcggcaggtacacgccctcgctttgaaaatgtctttggatgcttgcgtttacgttgcgaatgctctcattaccatgtatagcaaggtgtgtgatcatggaggtgtgtttgatgttagtagagacgaggcatggaaggtgtttagaagcatggaatcccggaatcttatatcctggaattccatgattgcagagtttctgtgtcgtagacttggagctcaagctattgatctgtttgtacaaatgcacgttgatggactctcgtttgaccgtgccacacttctcagtgttttttcttccttgaatggagtaaatggcgttgatgatatagtggtcactaagcttttctctgagacaagctgtcatcgggatattgtagcgtggacagacagggataccttctcaattgttttaaaagcctatgcaagccttgcaaccgagcgccatgcctcggcagttcattctcaagttattaaaggtgggtttgggggtgacatagtccttgcaaacgccttgatccatgcctatgctcggtgtggctccatatccttgtctaagaaagtttttgatggaattgagtttcgtgatgttgtttcttggaacacaattcttaaggcttatgccttgtatggactagctgcagaggcacggcagcttttttcacaaatggacattagacctgattctactacctttgtttctctcctctgtgcttgtagccatgctggactggtagaagaaggaaccagaatctttgactccatgcttgagagatatggaattgtacctctatgtgatcattatgcatgcatggttgatattcttggtcgagcgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

374

Amino Acids

41.34

Weight (kDa)

6.14

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	283
AccBSI	CCGCTC	2 cut(s)	146, 1118
AccI	GTMKAC	1 cut(s)	493
AciI	CCGC	3 cut(s)	144, 169, 1118
AclWI	GGATC	1 cut(s)	796
AcsI	RAATTY	2 cut(s)	74, 463
AfaI	GTAC	5 cut(s)	68, 161, 297, 525, 1071
AfiI	CCNNNNNNNGG	2 cut(s)	736, 816
AflII	CTTAAG	1 cut(s)	896
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	313, 589
AhdI	GACNNNNNGTC	1 cut(s)	645
AjnI	CCWGG	2 cut(s)	137, 458
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	7 cut(s)	103, 503, 509, 628, 645, 923, 940
AluI	AGCT	7 cut(s)	103, 503, 509, 628, 645, 923, 940
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	3 cut(s)	49, 402, 632
AlwI	GGATC	1 cut(s)	796
ApeKI	GCWGC	3 cut(s)	203, 923, 937
ApoI	RAATTY	2 cut(s)	74, 463
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	1 cut(s)	141
AsuC2I	CCSGG	2 cut(s)	157, 445
AsuHPI	GGTGA	3 cut(s)	49, 127, 788
AvaII	GGWCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	3 cut(s)	190, 910, 949
BccI	CCATC	3 cut(s)	26, 533, 848
BceAI	ACGGC	1 cut(s)	950
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BciT130I	CCWGG	2 cut(s)	139, 460
BciVI	GTATCC	1 cut(s)	673
BclI	TGATCA	2 cut(s)	379, 1081
BcnI	CCSGG	2 cut(s)	157, 445
BcoDI	GTCTC	3 cut(s)	49, 402, 632
BfaI	CTAG	1 cut(s)	920
BfmI	CTRYAG	1 cut(s)	924
BfoI	RGCGCY	1 cut(s)	730
BfrI	CTTAAG	1 cut(s)	896
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	3 cut(s)	204, 924, 938
BlsI	GCNGC	3 cut(s)	205, 925, 939
Bme1390I	CCNGG	4 cut(s)	139, 157, 445, 460
Bme18I	GGWCC	1 cut(s)	141
BmeRI	GACNNNNNGTC	1 cut(s)	645
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	2 cut(s)	826, 1030
BmrFI	CCNGG	4 cut(s)	139, 157, 445, 460
BmsI	GCATC	2 cut(s)	82, 316
BpuEI	CTTGAG	3 cut(s)	489, 735, 1073
BpuMI	CCSGG	2 cut(s)	157, 445
BsaJI	CCNNGG	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	2 cut(s)	736, 816
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	1020
Bse3DI	GCAATG	2 cut(s)	213, 280
BseBI	CCWGG	2 cut(s)	139, 460
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	2 cut(s)	28, 331
BseLI	CCNNNNNNNGG	2 cut(s)	736, 816
BseMI	GCAATG	2 cut(s)	213, 280
BseMII	CTCAG	3 cut(s)	171, 583, 627
BseNI	ACTGG	1 cut(s)	1020
BseRI	GAGGAG	2 cut(s)	15, 980
BseXI	GCAGC	3 cut(s)	190, 910, 949
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	3 cut(s)	156, 267, 445
BslI	CCNNNNNNNGG	2 cut(s)	736, 816
BsmAI	GTCTC	3 cut(s)	49, 402, 632
BsmBI	CGTCTC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp1407I	TGTACA	1 cut(s)	523
Bsp143I	GATC	5 cut(s)	176, 379, 514, 801, 1081
BspACI	CCGC	3 cut(s)	144, 169, 1118
BspCNI	CTCAG	3 cut(s)	172, 582, 628
BspLI	GGNNCC	2 cut(s)	826, 1030
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	796
BspTI	CTTAAG	1 cut(s)	896
BsrBI	CCGCTC	2 cut(s)	146, 1118
BsrDI	GCAATG	2 cut(s)	213, 280
BsrFI	RCCGGY	1 cut(s)	266
BsrGI	TGTACA	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	1020
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	5 cut(s)	176, 379, 514, 801, 1081
Bst2UI	CCWGG	2 cut(s)	139, 460
Bst4CI	ACNGT	1 cut(s)	557
BstAFI	CTTAAG	1 cut(s)	896
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstAUI	TGTACA	1 cut(s)	523
BstC8I	GCNNGC	6 cut(s)	6, 247, 251, 331, 712, 1093
BstDEI	CTNAG	7 cut(s)	85, 180, 254, 569, 624, 636, 840
BstF5I	GGATG	2 cut(s)	28, 331
BstH2I	RGCGCY	1 cut(s)	730
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	5 cut(s)	179, 382, 517, 804, 1084
BstMAI	GTCTC	3 cut(s)	49, 402, 632
BstMBI	GATC	5 cut(s)	176, 379, 514, 801, 1081
BstMWI	GCNNNNNNNGC	2 cut(s)	716, 929
BstNI	CCWGG	2 cut(s)	139, 460
BstNSI	RCATGY	2 cut(s)	67, 1095
BstSCI	CCNGG	4 cut(s)	137, 155, 443, 458
BstSFI	CTRYAG	1 cut(s)	924
BstV1I	GCAGC	3 cut(s)	190, 910, 949
BsuI	GTATCC	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	28, 331
BtsIMutI	CAGTG	1 cut(s)	577
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	6 cut(s)	6, 247, 251, 331, 712, 1093
CfoI	GCGC	1 cut(s)	729
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	5 cut(s)	67, 160, 296, 524, 1070
CviQI	GTAC	5 cut(s)	67, 160, 296, 524, 1070
DdeI	CTNAG	7 cut(s)	85, 180, 254, 569, 624, 636, 840
DpnI	GATC	5 cut(s)	178, 381, 516, 803, 1083
DpnII	GATC	5 cut(s)	176, 379, 514, 801, 1081
DraI	TTTAAA	1 cut(s)	699
DrdI	GACNNNNNNGTC	1 cut(s)	41
DriI	GACNNNNNGTC	1 cut(s)	645
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1105I	GACNNNNNGTC	1 cut(s)	645
Ecl136II	GAGCTC	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	503
EcoICRI	GAGCTC	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	137, 458
EcoT22I	ATGCAT	2 cut(s)	1093, 1097
EcoT38I	GRGCYC	1 cut(s)	505
Esp3I	CGTCTC	1 cut(s)	402
FauI	CCCGC	2 cut(s)	162, 1111
FbaI	TGATCA	2 cut(s)	379, 1081
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	204, 924, 938
FokI	GGATG	2 cut(s)	15, 338
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	3 cut(s)	204, 924, 938
FspBI	CTAG	1 cut(s)	920
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	3 cut(s)	204, 924, 938
HaeII	RGCGCY	1 cut(s)	730
HapII	CCGG	3 cut(s)	156, 267, 445
HhaI	GCGC	1 cut(s)	729
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	6 cut(s)	440, 448, 543, 968, 1035, 1043
HpaII	CCGG	3 cut(s)	156, 267, 445
HphI	GGTGA	3 cut(s)	49, 127, 788
Hpy166II	GTNNAC	4 cut(s)	298, 337, 494, 669
Hpy188I	TCNGA	2 cut(s)	181, 637
Hpy188III	TCNNGA	4 cut(s)	32, 226, 653, 869
Hpy8I	GTNNAC	4 cut(s)	298, 337, 494, 669
HpyAV	CCTTC	3 cut(s)	415, 694, 1019
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	2 cut(s)	339, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	716, 929
HpyF3I	CTNAG	7 cut(s)	85, 180, 254, 569, 624, 636, 840
HpySE526I	ACGT	2 cut(s)	339, 534
HspAI	GCGC	1 cut(s)	727
Ksp22I	TGATCA	2 cut(s)	379, 1081
Kzo9I	GATC	5 cut(s)	176, 379, 514, 801, 1081
LmnI	GCTCC	2 cut(s)	500, 830
Lsp1109I	GCAGC	3 cut(s)	190, 910, 949
LweI	GCATC	2 cut(s)	82, 316
MaeI	CTAG	1 cut(s)	920
MaeII	ACGT	2 cut(s)	339, 534
MaeIII	GTNAC	3 cut(s)	133, 619, 776
MalI	GATC	5 cut(s)	178, 381, 516, 803, 1083
MbiI	CCGCTC	2 cut(s)	146, 1118
MboI	GATC	5 cut(s)	176, 379, 514, 801, 1081
MboII	GAAGA	3 cut(s)	135, 573, 1034
MfeI	CAATTG	1 cut(s)	690
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	6 cut(s)	74, 463, 690, 858, 891, 1065
MlyI	GAGTC	2 cut(s)	537, 1037
MmeI	TCCRAC	1 cut(s)	72
Mph1103I	ATGCAT	2 cut(s)	1093, 1097
MseI	TTAA	3 cut(s)	698, 759, 897
MslI	CAYNNNNRTG	5 cut(s)	62, 359, 387, 537, 810
MspA1I	CMGCKG	2 cut(s)	103, 169
MspCI	CTTAAG	1 cut(s)	896
MspI	CCGG	3 cut(s)	156, 267, 445
MspR9I	CCNGG	4 cut(s)	139, 157, 445, 460
MunI	CAATTG	1 cut(s)	690
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	2 cut(s)	139, 460
MwoI	GCNNNNNNNGC	2 cut(s)	716, 929
NciI	CCSGG	2 cut(s)	157, 445
NdeII	GATC	5 cut(s)	176, 379, 514, 801, 1081
NlaIV	GGNNCC	2 cut(s)	826, 1030
NmeAIII	GCCGAG	1 cut(s)	716
NmuCI	GTSAC	3 cut(s)	133, 619, 776
NsiI	ATGCAT	2 cut(s)	1093, 1097
NspI	RCATGY	2 cut(s)	67, 1095
PaeI	GCATGC	1 cut(s)	1095
PciI	ACATGT	1 cut(s)	63
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	4 cut(s)	440, 448, 968, 1035
PflFI	GACNNNGTC	1 cut(s)	782
PfoI	TCCNGGA	2 cut(s)	443, 458
PkrI	GCNGC	3 cut(s)	205, 925, 939
PleI	GAGTC	2 cut(s)	537, 1037
PpsI	GAGTC	2 cut(s)	537, 1037
PscI	ACATGT	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	137, 458
PspGI	CCWGG	2 cut(s)	137, 458
PspN4I	GGNNCC	2 cut(s)	826, 1030
PspPI	GGNCC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	928
PsyI	GACNNNGTC	1 cut(s)	782
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	5 cut(s)	68, 161, 297, 525, 1071
RsaNI	GTAC	5 cut(s)	67, 160, 296, 524, 1070
RseI	CAYNNNNRTG	5 cut(s)	62, 359, 387, 537, 810
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	3 cut(s)	698, 759, 897
SatI	GCNGC	3 cut(s)	204, 924, 938
Sau3AI	GATC	5 cut(s)	176, 379, 514, 801, 1081
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	2 cut(s)	537, 1037
ScrFI	CCNGG	4 cut(s)	139, 157, 445, 460
SduI	GDGCHC	1 cut(s)	505
SfaNI	GCATC	2 cut(s)	82, 316
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	5 cut(s)	62, 359, 387, 537, 810
SmlI	CTYRAG	4 cut(s)	504, 750, 896, 1052
SmoI	CTYRAG	4 cut(s)	504, 750, 896, 1052
SphI	GCATGC	1 cut(s)	1095
Sse9I	AATT	6 cut(s)	74, 463, 690, 858, 891, 1065
SsiI	CCGC	3 cut(s)	144, 169, 1118
SspMI	CTAG	1 cut(s)	920
SstI	GAGCTC	1 cut(s)	505
StyD4I	CCNGG	4 cut(s)	137, 155, 443, 458
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	2 cut(s)	342, 537
TaqI	TCGA	3 cut(s)	108, 175, 1114
TasI	AATT	6 cut(s)	74, 463, 690, 858, 891, 1065
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	4 cut(s)	440, 448, 968, 1035
Tru1I	TTAA	3 cut(s)	698, 759, 897
Tru9I	TTAA	3 cut(s)	698, 759, 897
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	3 cut(s)	133, 619, 776
TseI	GCWGC	3 cut(s)	203, 923, 937
Tsp45I	GTSAC	3 cut(s)	133, 619, 776
TspDTI	ATGAA	3 cut(s)	126, 182, 734
TspRI	CASTG	1 cut(s)	577
Tth111I	GACNNNGTC	1 cut(s)	782
Vha464I	CTTAAG	1 cut(s)	896
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	2 cut(s)	74, 463
XceI	RCATGY	2 cut(s)	67, 1095
XmiI	GTMKAC	1 cut(s)	493
XspI	CTAG	1 cut(s)	920
Zsp2I	ATGCAT	2 cut(s)	1093, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.