Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8213794.1

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

12 .. 729

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8213794.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 718 bp

atggaatcccggaatcttatatcgtggaattccatgattgcagggtttcagtgtcgtggacgtggagctcaagctattgatctgtttgtacaaatgcaccttgatggactcgagtttgaccgtgccacgcttctcagcgtcttatcttccttgaatggagtaaatgacattgatgatgttgtggttactaagttttgttatcaattgcattgtctggttatcaaaaccgggtttatattaggaattgaagtggtcactgcgctggttaaagcttattcagatcttggaggggatgctgctgactgttacaggctcttctctgagacaagctgtcatcgggatattgttgcgtggacgggcattatgacaatattttccgagcgggaccctgaagaagcactctccctttttcgtcaattacgccgggagaatttagctccagacaggtataccttctccattgttttaaaagcctacgcaagccttgcaaccgagcgccatgcctcggcagttcattctcaagttatcaaaggcgggtttgggggtgacacagtccttgcaaacgccttgatccatgcatatgctcggtgcggctccatttcctcgtctaagcaagtttttgatggaattgagttatgtgatgttgtttcttggaacacaatgctcaaggcttatgccttgtatggacaagctgcagaggcactgcagcttttttcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

239

Amino Acids

26.29

Weight (kDa)

5.48

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	449
AciI	CCGC	3 cut(s)	382, 534, 591
AclWI	GGATC	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	28, 430
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	154, 248
AhdI	GACNNNNNGTC	1 cut(s)	330
AjiI	CACGTC	1 cut(s)	62
AluBI	AGCT	7 cut(s)	68, 74, 272, 330, 437, 692, 709
AluI	AGCT	7 cut(s)	68, 74, 272, 330, 437, 692, 709
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	110
ApeKI	GCWGC	3 cut(s)	296, 692, 706
ApoI	RAATTY	2 cut(s)	28, 430
AspLEI	GCGC	2 cut(s)	262, 498
AspS9I	GGNCC	1 cut(s)	385
AsuC2I	CCSGG	3 cut(s)	10, 229, 425
AsuHPI	GGTGA	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	283, 679
BccI	CCATC	2 cut(s)	98, 617
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BcnI	CCSGG	3 cut(s)	10, 229, 425
BcoDI	GTCTC	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	693, 704
BfoI	RGCGCY	1 cut(s)	499
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	4 cut(s)	297, 592, 693, 707
BlsI	GCNGC	4 cut(s)	298, 593, 694, 708
Bme1390I	CCNGG	3 cut(s)	10, 229, 425
Bme18I	GGWCC	1 cut(s)	385
BmeRI	GACNNNNNGTC	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	386, 387, 595
BmrFI	CCNGG	3 cut(s)	10, 229, 425
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	3 cut(s)	54, 504, 650
BpuMI	CCSGG	3 cut(s)	10, 229, 425
BsaJI	CCNNGG	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	148, 312
BseXI	GCAGC	2 cut(s)	283, 679
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	10, 228, 424
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	88
Bsp143I	GATC	3 cut(s)	79, 280, 570
BspACI	CCGC	3 cut(s)	382, 534, 591
BspCNI	CTCAG	2 cut(s)	147, 313
BspLI	GGNNCC	3 cut(s)	386, 387, 595
BspMAI	CTGCAG	2 cut(s)	697, 708
BspPI	GGATC	1 cut(s)	565
BspQI	GCTCTTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	382
BsrGI	TGTACA	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	3 cut(s)	79, 280, 570
BssNAI	GTATAC	1 cut(s)	450
Bst1107I	GTATAC	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	122, 305, 553
Bst6I	CTCTTC	1 cut(s)	320
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	4 cut(s)	134, 189, 321, 609
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	2 cut(s)	262, 498
BstKTI	GATC	3 cut(s)	82, 283, 573
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	79, 280, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 698
BstSCI	CCNGG	3 cut(s)	8, 227, 423
BstSFI	CTRYAG	2 cut(s)	693, 704
BstV1I	GCAGC	2 cut(s)	283, 679
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BstZ17I	GTATAC	1 cut(s)	450
BtrI	CACGTC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	2 cut(s)	255, 701
BtsIMutI	CAGTG	3 cut(s)	56, 255, 701
Cac8I	GCNNGC	1 cut(s)	481
CfoI	GCGC	2 cut(s)	262, 498
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	34, 500, 575
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	4 cut(s)	134, 189, 321, 609
DpnI	GATC	3 cut(s)	81, 282, 572
DpnII	GATC	3 cut(s)	79, 280, 570
DraI	TTTAAA	1 cut(s)	468
DriI	GACNNNNNGTC	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	320
Eam1105I	GACNNNNNGTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	3 cut(s)	37, 503, 578
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	3 cut(s)	33, 499, 574
FauI	CCCGC	2 cut(s)	375, 527
FauNDI	CATATG	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	449
Fnu4HI	GCNGC	4 cut(s)	297, 592, 693, 707
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	4 cut(s)	297, 592, 693, 707
GlaI	GCGC	2 cut(s)	261, 497
GluI	GCNGC	4 cut(s)	297, 592, 693, 707
GsuI	CTGGAG	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	499
HapII	CCGG	3 cut(s)	10, 228, 424
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	2 cut(s)	262, 498
Hin1II	CATG	3 cut(s)	37, 503, 578
Hin6I	GCGC	2 cut(s)	260, 496
HinP1I	GCGC	2 cut(s)	260, 496
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	3 cut(s)	5, 13, 108
HpaII	CCGG	3 cut(s)	10, 228, 424
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	59, 354, 450
Hpy188I	TCNGA	3 cut(s)	280, 322, 379
Hpy188III	TCNNGA	2 cut(s)	338, 440
Hpy8I	GTNNAC	3 cut(s)	59, 354, 450
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	3 cut(s)	122, 305, 553
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	8 cut(s)	41, 97, 208, 488, 560, 578, 695, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 698
HpyF3I	CTNAG	4 cut(s)	134, 189, 321, 609
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	3 cut(s)	37, 503, 578
HspAI	GCGC	2 cut(s)	260, 496
KflI	GGGWCCC	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	79, 280, 570
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	3 cut(s)	65, 442, 599
Lsp1109I	GCAGC	2 cut(s)	283, 679
LweI	GCATC	1 cut(s)	283
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	4 cut(s)	184, 253, 305, 545
MalI	GATC	3 cut(s)	81, 282, 572
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	3 cut(s)	79, 280, 570
MboII	GAAGA	3 cut(s)	138, 307, 404
MfeI	CAATTG	1 cut(s)	203
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	6 cut(s)	28, 203, 243, 416, 430, 627
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	281, 514, 613, 691
Mph1103I	ATGCAT	1 cut(s)	580
MseI	TTAA	2 cut(s)	267, 467
MslI	CAYNNNNRTG	2 cut(s)	102, 579
MspI	CCGG	3 cut(s)	10, 228, 424
MspR9I	CCNGG	3 cut(s)	10, 229, 425
MunI	CAATTG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	485, 698
NciI	CCSGG	3 cut(s)	10, 229, 425
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	3 cut(s)	79, 280, 570
NlaIII	CATG	3 cut(s)	37, 503, 578
NlaIV	GGNNCC	3 cut(s)	386, 387, 595
NmeAIII	GCCGAG	1 cut(s)	485
NmuCI	GTSAC	2 cut(s)	253, 545
NsiI	ATGCAT	1 cut(s)	580
PaeR7I	CTCGAG	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	5, 13
PflFI	GACNNNGTC	1 cut(s)	551
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	298, 593, 694, 708
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PpuMI	RGGWCCY	1 cut(s)	385
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	385
PspN4I	GGNNCC	3 cut(s)	386, 387, 595
PspPI	GGNCC	1 cut(s)	385
PspPPI	RGGWCCY	1 cut(s)	385
PspXI	VCTCGAGB	1 cut(s)	110
PstI	CTGCAG	2 cut(s)	697, 708
PsuI	RGATCY	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	2 cut(s)	102, 579
SacI	GAGCTC	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	267, 467
SatI	GCNGC	4 cut(s)	297, 592, 693, 707
Sau3AI	GATC	3 cut(s)	79, 280, 570
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	3 cut(s)	10, 229, 425
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	2 cut(s)	693, 704
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	385
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	102, 579
SmlI	CTYRAG	4 cut(s)	69, 110, 519, 665
SmoI	CTYRAG	4 cut(s)	69, 110, 519, 665
Sse9I	AATT	6 cut(s)	28, 203, 243, 416, 430, 627
SsiI	CCGC	3 cut(s)	382, 534, 591
SspI	AATATT	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	3 cut(s)	8, 227, 423
TaaI	ACNGT	3 cut(s)	122, 305, 553
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	111
TasI	AATT	6 cut(s)	28, 203, 243, 416, 430, 627
TatI	WGTACW	1 cut(s)	88
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	2 cut(s)	5, 13
Tru1I	TTAA	2 cut(s)	267, 467
Tru9I	TTAA	2 cut(s)	267, 467
TscAI	CASTG	3 cut(s)	56, 262, 708
TseFI	GTSAC	2 cut(s)	253, 545
TseI	GCWGC	3 cut(s)	296, 692, 706
Tsp45I	GTSAC	2 cut(s)	253, 545
TspDTI	ATGAA	1 cut(s)	503
TspRI	CASTG	3 cut(s)	56, 262, 708
Tth111I	GACNNNGTC	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	2 cut(s)	28, 430
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	449
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.