Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

943680 .. 945476

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGTTGCTGCATCACCTCCCGAATGAGTTTGCATTTGCCAGCGTGCTAAGTTCGTGTGCCGATAGTGATGGGGAATATGGCCGGCAGGTACACGCCCTGGCTTTGAAAATGTCCTTGGATGCTTGCGTTTACATTGCGAATGCTCTCATTACCATGTACAGCAAGGTGTGTGATCATGGAGGTGTGTTAGACGTTAGTAGAGACGAGGCATGGAAGGTGTTTACAAGCATGGAATCCCGGAATCTTATATCCTGGAATTCCATGATTGCAGGGTTTCAGTGTCGTGGACTTGGAGCTCAAGCTATTGATCTGTTTGTACAAATGCACGTTGATGGACTCGAGTTTGACCGTGCCACGCTTCTCAGCGTCTTATCTTCCTTGAATGGAGTAAATGACATTGATGATGTTGTGGTTACTAAGTTTTGTTATCAATTGCATTGTCTGGTTATCAAAACCGGGTTTATATTAGGAATTGAAGTGGTCACTGCGCTAGTTAAAGCTTATTCAGATCTTGGAGGGGATGCTGCTGACTGTTACAGGCTCTTCTCTGAGACAAGCTGTCATCGGGATATTGTTGCGTGGACGGGCATTATGACAATATTTTCCGAGCGGGACCCTGAAGAAGCACTCTCCCTTTTTCGTCAATTACGCCGGGAGAATTTAGCTCCAGACAGGTATACCTTCTCCATTGTTTTAAAAGCCTACGCAAGCCTTGCAACCGAGCGCCATGCCTCGGCAGTTCATTCTCAAGTTATCAAAGGCAGGTTTGGGGGTGACACAGTCCTTGCAAACGCCTTGATCCATGCATATGCTCGGTGCGGCTCCATTTCCTCGTCTAAGCAAGTTTTTGATGGAATTGAGTTTCGTGATGCTGTTTCTTGGAACACAATGCTCAAGGCTTATGCCTTGTATGGACAAGCTGCAGAGGCACTGCAGCTTTTTTCACAAATGGACGTTAAACCTGATTCTGCTACATTTGTTTCTCTCCTCTGTGCTTGTAGTCATGCTGGACTGGTAGAAGAAGGAACCAGAATCTTTGACTCCATGCTTGAGAGATATGGCATTGTACCTCTATGTGATCATTATGCCTGCATGGTTGACATTCTTGGTCGAGCTGGACGAGTTGGTGAGGCTGAGAAGCTTGTAAGTAGAATGCCAATGGAGCCCGATTCTGTTGTTTGGAGTGCACTCCTTGGATCATGTAGGAAGCATGGAAATACACAGTTGGCCAAGTTAGCAGCTGATAGACTGAAGGAGTTGGCTCCAGAGGGTTCATTAGTTTATGTACAAATGTCAAATATATATAGCTCTGATGGTAACTTTTGTGAAGCGGGCCTGATTAGGAAGGAAATGAAAGGGTGTCGTGTGAAAAAGGAACCTGGATTAAGCTGGATTGAGATCAGAAATCAGGTGCATGAGTTCTCCTCTGGAGGCCGACGCCATCCAGAAAGGAATCTTATAAGCAGAAAACTAAAAGAACTGATTGGACAGTTAAGGGAAATTGGTTATGTTCCAGATACAAGCTCATCCTTGCATGATGTGGAAGAGGAGCACAAAGAGGAACAATTGTACCATCATAGTGAGAAGCTAGCTTTAGTGTTTGCCATTATGAATGAAAGCAGTTTACATTGCGGTAGGACTGGTATAAAAATAATGAAGAATATCAGAGTATGCGTGGATTGCCATAACTTCATGAAGTTAGCATCAAATCTACTTCAAAAGGATATTGTTGTGAGAGATTCAAACCGTTTCCACCACTTTAAAGATGGCATATGTTCTTGCAATGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

598

Amino Acids

66.66

Weight (kDa)

6.16

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	190 - 236	5.4e-08	PPR repeat family
PPR_2	PF13041	290 - 334	3.2e-08	PPR repeat family
E_motif	PF20431	404 - 466	2.8e-14	E motif
DYW_deaminase	PF14432	502 - 598	3.4e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1460
Acc36I	ACCTGC	2 cut(s)	76, 753
AccBSI	CCGCTC	1 cut(s)	610
AccI	GTMKAC	1 cut(s)	677
AciI	CCGC	4 cut(s)	610, 819, 1331, 1632
AclWI	GGATC	2 cut(s)	793, 1204
AcoI	YGGCCR	2 cut(s)	79, 1227
AcsI	RAATTY	2 cut(s)	256, 658
AcuI	CTGAAG	2 cut(s)	639, 1271
AcyI	GRCGYC	1 cut(s)	1438
AfaI	GTAC	6 cut(s)	90, 158, 318, 1068, 1287, 1571
AfiI	CCNNNNNNNGG	1 cut(s)	733
AgsI	TTSAA	5 cut(s)	106, 382, 476, 1718, 1743
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	3 cut(s)	96, 251, 1378
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
Alw21I	GWGCWC	3 cut(s)	298, 1189, 1554
Alw26I	GTCTC	2 cut(s)	195, 545
Alw44I	GTGCAC	1 cut(s)	1185
AlwI	GGATC	2 cut(s)	793, 1204
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	4 cut(s)	79, 1227, 1333, 1432
ApaLI	GTGCAC	1 cut(s)	1185
ApeKI	GCWGC	5 cut(s)	7, 524, 920, 934, 1238
ApoI	RAATTY	2 cut(s)	256, 658
AspLEI	GCGC	2 cut(s)	490, 726
AspS9I	GGNCC	2 cut(s)	613, 1333
AsuC2I	CCSGG	3 cut(s)	238, 457, 653
AsuHPI	GGTGA	3 cut(s)	5, 785, 1139
AsuNHI	GCTAGC	1 cut(s)	1588
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	1189
BaeI	ACNNNNGTAYC	2 cut(s)	1553, 1586
BalI	TGGCCA	1 cut(s)	1229
BanII	GRGCYC	2 cut(s)	298, 1167
Bbv12I	GWGCWC	3 cut(s)	298, 1189, 1554
BbvI	GCAGC	4 cut(s)	511, 907, 946, 1250
BccI	CCATC	7 cut(s)	62, 326, 845, 1307, 1449, 1581, 1760
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	3 cut(s)	98, 253, 1380
BclI	TGATCA	2 cut(s)	172, 1078
BcnI	CCSGG	3 cut(s)	238, 457, 653
BcoDI	GTCTC	2 cut(s)	195, 545
BfaI	CTAG	2 cut(s)	491, 1589
BfmI	CTRYAG	2 cut(s)	921, 932
BfoI	RGCGCY	1 cut(s)	727
BfuAI	ACCTGC	2 cut(s)	76, 753
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	6 cut(s)	8, 525, 820, 921, 935, 1239
BlsI	GCNGC	6 cut(s)	9, 526, 821, 922, 936, 1240
Bme1390I	CCNGG	6 cut(s)	98, 238, 253, 457, 653, 1380
Bme18I	GGWCC	1 cut(s)	613
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	613, 1333
BmiI	GGNNCC	7 cut(s)	614, 615, 823, 1027, 1164, 1263, 1377
BmrFI	CCNGG	6 cut(s)	98, 238, 253, 457, 653, 1380
BmsI	GCATC	5 cut(s)	19, 109, 511, 859, 1712
BmtI	GCTAGC	1 cut(s)	1592
BplI	GAGNNNNNCTC	2 cut(s)	1409, 1441
BpmI	CTGGAG	3 cut(s)	651, 1248, 1449
BpuEI	CTTGAG	4 cut(s)	282, 732, 878, 1070
BpuMI	CCSGG	3 cut(s)	238, 457, 653
BsaBI	GATNNNNATC	1 cut(s)	1397
BsaHI	GRCGYC	1 cut(s)	1438
BsaJI	CCNNGG	4 cut(s)	96, 114, 732, 1192
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	3 cut(s)	1017, 1645, 1796
Bse3DI	GCAATG	3 cut(s)	132, 1627, 1789
Bse8I	GATNNNNATC	1 cut(s)	1397
BseBI	CCWGG	3 cut(s)	98, 253, 1380
BseDI	CCNNGG	4 cut(s)	96, 114, 732, 1192
BseGI	GGATG	4 cut(s)	124, 526, 1441, 1526
BseJI	GATNNNNATC	1 cut(s)	1397
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMI	GCAATG	3 cut(s)	132, 1627, 1789
BseMII	CTCAG	3 cut(s)	376, 540, 1125
BseNI	ACTGG	3 cut(s)	1017, 1645, 1796
BseRI	GAGGAG	3 cut(s)	977, 1414, 1562
BseSI	GKGCMC	1 cut(s)	1189
BseXI	GCAGC	4 cut(s)	511, 907, 946, 1250
BshFI	GGCC	4 cut(s)	81, 1229, 1335, 1434
BsiHKAI	GWGCWC	3 cut(s)	298, 1189, 1554
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	4 cut(s)	82, 238, 456, 652
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	2 cut(s)	195, 545
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	626
BsmI	GAATGC	2 cut(s)	145, 1158
BsnI	GGCC	4 cut(s)	81, 1229, 1335, 1434
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	4 cut(s)	298, 1167, 1189, 1554
Bsp1407I	TGTACA	3 cut(s)	156, 316, 1285
Bsp143I	GATC	7 cut(s)	172, 307, 508, 798, 1078, 1196, 1398
BspACI	CCGC	4 cut(s)	610, 819, 1331, 1632
BspANI	GGCC	4 cut(s)	81, 1229, 1335, 1434
BspCNI	CTCAG	3 cut(s)	375, 541, 1126
BspHI	TCATGA	1 cut(s)	1692
BspLI	GGNNCC	7 cut(s)	614, 615, 823, 1027, 1164, 1263, 1377
BspMAI	CTGCAG	2 cut(s)	925, 936
BspMI	ACCTGC	2 cut(s)	76, 753
BspOI	GCTAGC	1 cut(s)	1592
BspPI	GGATC	2 cut(s)	793, 1204
BspQI	GCTCTTC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	610
BsrDI	GCAATG	3 cut(s)	132, 1627, 1789
BsrFI	RCCGGY	1 cut(s)	81
BsrGI	TGTACA	3 cut(s)	156, 316, 1285
BsrI	ACTGG	3 cut(s)	1017, 1645, 1796
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	4 cut(s)	96, 114, 732, 1192
BssMI	GATC	7 cut(s)	172, 307, 508, 798, 1078, 1196, 1398
BssNAI	GTATAC	1 cut(s)	678
BssNI	GRCGYC	1 cut(s)	1438
BssT1I	CCWWGG	2 cut(s)	114, 1192
Bst1107I	GTATAC	1 cut(s)	678
Bst2UI	CCWGG	3 cut(s)	98, 253, 1380
Bst4CI	ACNGT	6 cut(s)	350, 533, 781, 1224, 1491, 1748
Bst6I	CTCTTC	2 cut(s)	548, 1539
BstACI	GRCGYC	1 cut(s)	1438
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	3 cut(s)	156, 316, 1285
BstC8I	GCNNGC	8 cut(s)	40, 44, 83, 124, 709, 1090, 1333, 1590
BstDEI	CTNAG	6 cut(s)	47, 362, 417, 549, 837, 1134
BstF5I	GGATG	4 cut(s)	124, 526, 1441, 1526
BstH2I	RGCGCY	1 cut(s)	727
BstHHI	GCGC	2 cut(s)	490, 726
BstKTI	GATC	7 cut(s)	175, 310, 511, 801, 1081, 1199, 1401
BstMAI	GTCTC	2 cut(s)	195, 545
BstMBI	GATC	7 cut(s)	172, 307, 508, 798, 1078, 1196, 1398
BstMWI	GCNNNNNNNGC	5 cut(s)	713, 926, 1162, 1235, 1680
BstNI	CCWGG	3 cut(s)	98, 253, 1380
BstSCI	CCNGG	6 cut(s)	96, 236, 251, 455, 651, 1378
BstSFI	CTRYAG	2 cut(s)	921, 932
BstSLI	GKGCMC	1 cut(s)	1189
BstV1I	GCAGC	4 cut(s)	511, 907, 946, 1250
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BstZ17I	GTATAC	1 cut(s)	678
BsuRI	GGCC	4 cut(s)	81, 1229, 1335, 1434
BtsCI	GGATG	4 cut(s)	124, 526, 1441, 1526
BtsI	GCAGTG	2 cut(s)	483, 929
BtsIMutI	CAGTG	3 cut(s)	284, 483, 929
BveI	ACCTGC	2 cut(s)	76, 753
Cac8I	GCNNGC	8 cut(s)	40, 44, 83, 124, 709, 1090, 1333, 1590
CciI	TCATGA	1 cut(s)	1692
CfoI	GCGC	2 cut(s)	490, 726
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	613, 1333
CseI	GACGC	2 cut(s)	355, 1446
Csp6I	GTAC	6 cut(s)	89, 157, 317, 1067, 1286, 1570
CviQI	GTAC	6 cut(s)	89, 157, 317, 1067, 1286, 1570
DdeI	CTNAG	6 cut(s)	47, 362, 417, 549, 837, 1134
DpnI	GATC	7 cut(s)	174, 309, 510, 800, 1080, 1198, 1400
DpnII	GATC	7 cut(s)	172, 307, 508, 798, 1078, 1196, 1398
DraI	TTTAAA	2 cut(s)	696, 1762
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	2 cut(s)	79, 1227
Eam1104I	CTCTTC	2 cut(s)	548, 1539
Eam1105I	GACNNNNNGTC	1 cut(s)	558
EarI	CTCTTC	2 cut(s)	548, 1539
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	114, 1192
Eco24I	GRGCYC	2 cut(s)	298, 1167
Eco47I	GGWCC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	639, 1271
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	3 cut(s)	96, 251, 1378
EcoT14I	CCWWGG	2 cut(s)	114, 1192
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	2 cut(s)	298, 1167
ErhI	CCWWGG	2 cut(s)	114, 1192
Esp3I	CGTCTC	1 cut(s)	195
FaqI	GGGAC	1 cut(s)	626
FauI	CCCGC	2 cut(s)	603, 1324
FauNDI	CATATG	2 cut(s)	808, 1772
FbaI	TGATCA	2 cut(s)	172, 1078
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	6 cut(s)	8, 525, 820, 921, 935, 1239
FokI	GGATG	4 cut(s)	131, 533, 1428, 1513
FriOI	GRGCYC	2 cut(s)	298, 1167
Fsp4HI	GCNGC	6 cut(s)	8, 525, 820, 921, 935, 1239
FspBI	CTAG	2 cut(s)	491, 1589
GlaI	GCGC	2 cut(s)	489, 725
GluI	GCNGC	6 cut(s)	8, 525, 820, 921, 935, 1239
GsuI	CTGGAG	3 cut(s)	651, 1248, 1449
HaeII	RGCGCY	1 cut(s)	727
HaeIII	GGCC	4 cut(s)	81, 1229, 1335, 1434
HapII	CCGG	4 cut(s)	82, 238, 456, 652
HgaI	GACGC	2 cut(s)	355, 1446
HhaI	GCGC	2 cut(s)	490, 726
Hin1I	GRCGYC	1 cut(s)	1438
Hin6I	GCGC	2 cut(s)	488, 724
HinP1I	GCGC	2 cut(s)	488, 724
HincII	GTYRAC	1 cut(s)	1099
HindII	GTYRAC	1 cut(s)	1099
HindIII	AAGCTT	2 cut(s)	498, 1139
HinfI	GANTC	9 cut(s)	233, 241, 336, 965, 1032, 1040, 1169, 1453, 1739
HpaII	CCGG	4 cut(s)	82, 238, 456, 652
HphI	GGTGA	3 cut(s)	5, 785, 1139
Hpy166II	GTNNAC	9 cut(s)	91, 130, 222, 287, 582, 678, 1099, 1187, 1625
Hpy188I	TCNGA	6 cut(s)	508, 550, 607, 1312, 1403, 1667
Hpy188III	TCNNGA	9 cut(s)	19, 566, 668, 866, 1265, 1428, 1445, 1514, 1693
Hpy8I	GTNNAC	9 cut(s)	91, 130, 222, 287, 582, 678, 1099, 1187, 1625
Hpy99I	CGWCG	1 cut(s)	1440
HpyAV	CCTTC	5 cut(s)	208, 691, 1016, 1246, 1339
HpyCH4III	ACNGT	6 cut(s)	350, 533, 781, 1224, 1491, 1748
HpyCH4IV	ACGT	3 cut(s)	192, 327, 954
HpyF10VI	GCNNNNNNNGC	5 cut(s)	713, 926, 1162, 1235, 1680
HpyF3I	CTNAG	6 cut(s)	47, 362, 417, 549, 837, 1134
HpySE526I	ACGT	3 cut(s)	192, 327, 954
Hsp92I	GRCGYC	1 cut(s)	1438
HspAI	GCGC	2 cut(s)	488, 724
KflI	GGGWCCC	1 cut(s)	613
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Ksp22I	TGATCA	2 cut(s)	172, 1078
Kzo9I	GATC	7 cut(s)	172, 307, 508, 798, 1078, 1196, 1398
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	6 cut(s)	293, 670, 827, 1162, 1267, 1549
Lsp1109I	GCAGC	4 cut(s)	511, 907, 946, 1250
LweI	GCATC	5 cut(s)	19, 109, 511, 859, 1712
MaeI	CTAG	2 cut(s)	491, 1589
MaeII	ACGT	3 cut(s)	192, 327, 954
MaeIII	GTNAC	5 cut(s)	412, 481, 533, 773, 1316
MalI	GATC	7 cut(s)	174, 309, 510, 800, 1080, 1198, 1400
MbiI	CCGCTC	1 cut(s)	610
MboI	GATC	7 cut(s)	172, 307, 508, 798, 1078, 1196, 1398
MboII	GAAGA	6 cut(s)	366, 535, 632, 1031, 1556, 1669
MfeI	CAATTG	2 cut(s)	431, 1565
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	4 cut(s)	298, 1167, 1189, 1554
MlsI	TGGCCA	1 cut(s)	1229
MluCI	AATT	8 cut(s)	256, 431, 471, 644, 658, 855, 1500, 1565
MluNI	TGGCCA	1 cut(s)	1229
MlyI	GAGTC	2 cut(s)	330, 1034
Mox20I	TGGCCA	1 cut(s)	1229
Mph1103I	ATGCAT	1 cut(s)	808
MroNI	GCCGGC	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	1229
MseI	TTAA	6 cut(s)	495, 695, 957, 1385, 1493, 1761
MslI	CAYNNNNRTG	5 cut(s)	152, 180, 330, 807, 1578
Msp20I	TGGCCA	1 cut(s)	1229
MspA1I	CMGCKG	1 cut(s)	1241
MspI	CCGG	4 cut(s)	82, 238, 456, 652
MspR9I	CCNGG	6 cut(s)	98, 238, 253, 457, 653, 1380
MunI	CAATTG	2 cut(s)	431, 1565
Mva1269I	GAATGC	2 cut(s)	145, 1158
MvaI	CCWGG	3 cut(s)	98, 253, 1380
MwoI	GCNNNNNNNGC	5 cut(s)	713, 926, 1162, 1235, 1680
NaeI	GCCGGC	1 cut(s)	83
NciI	CCSGG	3 cut(s)	238, 457, 653
NdeI	CATATG	2 cut(s)	808, 1772
NdeII	GATC	7 cut(s)	172, 307, 508, 798, 1078, 1196, 1398
NgoMIV	GCCGGC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	1588
NlaIV	GGNNCC	7 cut(s)	614, 615, 823, 1027, 1164, 1263, 1377
NmeAIII	GCCGAG	1 cut(s)	713
NmuCI	GTSAC	2 cut(s)	481, 773
NsiI	ATGCAT	1 cut(s)	808
PaeR7I	CTCGAG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	1692
PciSI	GCTCTTC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	1117
PctI	GAATGC	2 cut(s)	145, 1158
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	7 cut(s)	233, 241, 965, 1032, 1169, 1453, 1739
PflFI	GACNNNGTC	1 cut(s)	779
PfoI	TCCNGGA	2 cut(s)	236, 251
PkrI	GCNGC	6 cut(s)	9, 526, 821, 922, 936, 1240
PleI	GAGTC	2 cut(s)	330, 1034
PpsI	GAGTC	2 cut(s)	330, 1034
PpuMI	RGGWCCY	1 cut(s)	613
PsiI	TTATAA	1 cut(s)	1460
Psp124BI	GAGCTC	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	3 cut(s)	96, 251, 1378
PspGI	CCWGG	3 cut(s)	96, 251, 1378
PspN4I	GGNNCC	7 cut(s)	614, 615, 823, 1027, 1164, 1263, 1377
PspPI	GGNCC	2 cut(s)	613, 1333
PspPPI	RGGWCCY	1 cut(s)	613
PspXI	VCTCGAGB	1 cut(s)	338
PstI	CTGCAG	2 cut(s)	925, 936
PsuI	RGATCY	1 cut(s)	508
PsyI	GACNNNGTC	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	1241
RsaI	GTAC	6 cut(s)	90, 158, 318, 1068, 1287, 1571
RsaNI	GTAC	6 cut(s)	89, 157, 317, 1067, 1286, 1570
RseI	CAYNNNNRTG	5 cut(s)	152, 180, 330, 807, 1578
SacI	GAGCTC	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	6 cut(s)	495, 695, 957, 1385, 1493, 1761
SatI	GCNGC	6 cut(s)	8, 525, 820, 921, 935, 1239
Sau3AI	GATC	7 cut(s)	172, 307, 508, 798, 1078, 1196, 1398
Sau96I	GGNCC	2 cut(s)	613, 1333
SchI	GAGTC	2 cut(s)	330, 1034
ScrFI	CCNGG	6 cut(s)	98, 238, 253, 457, 653, 1380
SduI	GDGCHC	4 cut(s)	298, 1167, 1189, 1554
SfaNI	GCATC	5 cut(s)	19, 109, 511, 859, 1712
SfcI	CTRYAG	2 cut(s)	921, 932
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	613
SlaI	CTCGAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	5 cut(s)	152, 180, 330, 807, 1578
SmlI	CTYRAG	5 cut(s)	297, 338, 747, 893, 1049
SmoI	CTYRAG	5 cut(s)	297, 338, 747, 893, 1049
Sse9I	AATT	8 cut(s)	256, 431, 471, 644, 658, 855, 1500, 1565
SsiI	CCGC	4 cut(s)	610, 819, 1331, 1632
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	2 cut(s)	491, 1589
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	6 cut(s)	96, 236, 251, 455, 651, 1378
StyI	CCWWGG	2 cut(s)	114, 1192
TaaI	ACNGT	6 cut(s)	350, 533, 781, 1224, 1491, 1748
TaiI	ACGT	3 cut(s)	195, 330, 957
TaqI	TCGA	2 cut(s)	339, 1111
TasI	AATT	8 cut(s)	256, 431, 471, 644, 658, 855, 1500, 1565
TatI	WGTACW	3 cut(s)	156, 316, 1285
TauI	GCSGC	1 cut(s)	822
TfiI	GAWTC	7 cut(s)	233, 241, 965, 1032, 1169, 1453, 1739
Tru1I	TTAA	6 cut(s)	495, 695, 957, 1385, 1493, 1761
Tru9I	TTAA	6 cut(s)	495, 695, 957, 1385, 1493, 1761
TscAI	CASTG	3 cut(s)	284, 490, 936
TseFI	GTSAC	2 cut(s)	481, 773
TseI	GCWGC	5 cut(s)	7, 524, 920, 934, 1238
Tsp45I	GTSAC	2 cut(s)	481, 773
TspDTI	ATGAA	8 cut(s)	731, 1263, 1367, 1625, 1629, 1670, 1681, 1709
TspRI	CASTG	3 cut(s)	284, 490, 936
Tth111I	GACNNNGTC	1 cut(s)	779
VneI	GTGCAC	1 cut(s)	1185
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	2 cut(s)	256, 658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1763
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	677
XspI	CTAG	2 cut(s)	491, 1589
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.