Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

6202766 .. 6203193

Gene Structure 428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCTTGCCCACAACCCCATCACTCCTCCAGACCTCTTTGTCTCCAACCACCTCATCAACATGTGCTCCAAATTCGGCTACCTAGACCACGCCCGCCAACTGTTCGATGAAATGCCCAGAAGAAACCTCGTCACCTGGACCGCTCTCATTTCCGGGTACGCACAGCGGGGTCGGGCTGTAGCTTGTTTTCGTTTATTTGCTGCCATGTTGGCGCATTACCTCCCGAATGAGTTTGCATTTACCAGCGTGCTTAGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

86

Amino Acids

9.77

Weight (kDa)

8.8

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	10 - 42	7.8e-06	PPR repeat family
PPR	PF01535	16 - 42	3.2e-06	PPR repeat
PPR_2	PF13041	42 - 85	5.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	3 cut(s)	94, 141, 166
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	136, 154
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmrFI	CCNGG	2 cut(s)	136, 154
BpmI	CTGGAG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
BseBI	CCWGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	68
BspACI	CCGC	3 cut(s)	94, 141, 166
BsrBI	CCGCTC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	6, 94, 248
BstDEI	CTNAG	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	134, 152
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	6, 94, 248
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	61, 205
CviJI	RGCY	3 cut(s)	78, 176, 182
CviKI_1	RGCY	3 cut(s)	78, 176, 182
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	251
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	134
FaeI	CATG	2 cut(s)	64, 208
FaiI	YATR	2 cut(s)	62, 206
FatI	CATG	2 cut(s)	60, 204
FauI	CCCGC	2 cut(s)	101, 159
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	12
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	64, 208
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	124
Hpy188III	TCNNGA	3 cut(s)	29, 223, 258
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	64, 208
HspAI	GCGC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	6 cut(s)	42, 121, 130, 148, 166, 256
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	130
MbiI	CCGCTC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	5 cut(s)	36, 44, 62, 137, 230
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	136, 154
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	154
NlaIII	CATG	2 cut(s)	64, 208
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	64
PciI	ACATGT	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	59
SatI	GCNGC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	2 cut(s)	136, 154
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	7 cut(s)	36, 54, 84, 129, 137, 184, 222
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	3 cut(s)	94, 141, 166
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	134, 152
TaaI	ACNGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	64
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.