Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003527.1

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

33670 .. 34062

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003527.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgcataaaaatgcgtgtaatcactacgcccatgtgctcgcgcgagtcatagaaccttcacctcaatcaaccatccacgttcttcccatgcctcccagcctcaacctgcaaacgaacaatcttctcaacaaagtaggggccctagccacacgcagccaactcaacgaagcactctccctcttctacactcttcaaccgccaccatctcaaactcactgtaaccaaacctacgccactctcttccacgcatgcgctcgccaccactccctccaacaaggcctctctctgcaccattacttgcttgcccacaaccccatcactcttcatcccgacctctttgtctctaaccacgtcatcaacatgtacgccaacctattgattgcagggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

130

Amino Acids

14.53

Weight (kDa)

8.57

Isoelectric Point (pI)

81.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	114
AccII	CGCG	2 cut(s)	41, 43
AciI	CCGC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	1 cut(s)	194
AjiI	CACGTC	1 cut(s)	352
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	346
AoxI	GGCC	2 cut(s)	138, 277
ApaI	GGGCCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	43, 254
AspS9I	GGNCC	2 cut(s)	138, 139
AsuHPI	GGTGA	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	3 cut(s)	80, 211, 323
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	138, 139
BmiI	GGNNCC	2 cut(s)	139, 140
BseGI	GGATG	2 cut(s)	72, 325
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	2 cut(s)	41, 43
BshFI	GGCC	2 cut(s)	140, 279
BsiHKAI	GWGCWC	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	140, 279
Bsp120I	GGGCCC	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	39, 142
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	140, 279
BspFNI	CGCG	2 cut(s)	41, 43
BspLI	GGNNCC	2 cut(s)	139, 140
BspMI	ACCTGC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	4 cut(s)	185, 195, 245, 327
BstC8I	GCNNGC	4 cut(s)	39, 250, 256, 303
BstF5I	GGATG	2 cut(s)	72, 325
BstFNI	CGCG	2 cut(s)	41, 43
BstHHI	GCGC	2 cut(s)	43, 254
BstMAI	GTCTC	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	252, 364
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	2 cut(s)	41, 43
BstV1I	GCAGC	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	140, 279
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	72, 325
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	4 cut(s)	39, 250, 256, 303
CfoI	GCGC	2 cut(s)	43, 254
Cfr13I	GGNCC	2 cut(s)	138, 139
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	4 cut(s)	32, 88, 249, 361
CviJI	RGCY	5 cut(s)	99, 140, 146, 156, 279
CviKI_1	RGCY	5 cut(s)	99, 140, 146, 156, 279
CviQI	GTAC	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eam1104I	CTCTTC	4 cut(s)	185, 195, 245, 327
EarI	CTCTTC	4 cut(s)	185, 195, 245, 327
Eco147I	AGGCCT	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	142
EcoO109I	RGGNCCY	2 cut(s)	138, 139
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	4 cut(s)	35, 91, 252, 364
FaiI	YATR	6 cut(s)	6, 33, 50, 89, 250, 362
FatI	CATG	4 cut(s)	31, 87, 248, 360
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	2 cut(s)	59, 312
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	2 cut(s)	42, 253
GluI	GCNGC	1 cut(s)	154
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	140, 279
HhaI	GCGC	2 cut(s)	43, 254
Hin1II	CATG	4 cut(s)	35, 91, 252, 364
Hin6I	GCGC	2 cut(s)	41, 252
HinP1I	GCGC	2 cut(s)	41, 252
HinfI	GANTC	1 cut(s)	45
HphI	GGTGA	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	329
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	2 cut(s)	78, 351
HpyCH4V	TGCA	4 cut(s)	4, 109, 289, 383
HpySE526I	ACGT	2 cut(s)	78, 351
Hsp92II	CATG	4 cut(s)	35, 91, 252, 364
HspAI	GCGC	2 cut(s)	41, 252
LpnPI	CCDG	3 cut(s)	109, 119, 369
Lsp1109I	GCAGC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	2 cut(s)	78, 351
MaeIII	GTNAC	1 cut(s)	218
MboII	GAAGA	6 cut(s)	74, 113, 172, 182, 232, 314
MhlI	GDGCHC	2 cut(s)	39, 142
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	7 cut(s)	72, 102, 110, 188, 278, 290, 344
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	2 cut(s)	9, 359
MvnI	CGCG	2 cut(s)	41, 43
NlaIII	CATG	4 cut(s)	35, 91, 252, 364
NlaIV	GGNNCC	2 cut(s)	139, 140
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	252, 364
PaeI	GCATGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	279
PciI	ACATGT	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PscI	ACATGT	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	139, 140
PspOMI	GGGCCC	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	138, 139
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	9, 359
SatI	GCNGC	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	138, 139
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	39, 142
SetI	ASST	8 cut(s)	58, 64, 81, 108, 230, 336, 354, 375
SmiMI	CAYNNNNRTG	2 cut(s)	9, 359
SphI	GCATGC	1 cut(s)	252
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	2 cut(s)	81, 354
TscAI	CASTG	1 cut(s)	221
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	221
XceI	RCATGY	2 cut(s)	252, 364
XspI	CTAG	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.