Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Reverse (-)

67394591 .. 67396387

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGTTGCTGCATCACCTCCCGAATGAGTTTGCATTTGCCAGCGTACTAAGTTCGTGTGCCGATAGTGATGGGGAATATGGCCGGCAGGTACACGCCCTGGCTTTGAAAATGTCCTTGGATGCTTGCGTTTACATTGCGAATGCTCTCATTACCATGTACAGCAAGGTGTGTGATCATGGAGGTGTGTTAGACGTTAGTAGAGACGAGGCATGGAAGGTGTTTACAAGCATGGAATCCCGGAATCTTATATCCTGGAATTCCATGATTGCAGGGTTTCAGTGTCGTGGACTTGGAGCTCAAGCTATTGATCTGTTTGTACAAATGCACGTTGATGGACTTGACTTTGACCGTGCCACACTTCTCAGCGTCTTATCTTCCTTGAATGGAGTAAATGGCATTGATGATATAGTGGTCACTAAGTTTTGTTATCAACTGCATTGTCTGGTTATCAAAACCGGGTTTATATTAGGAATTGAGGTGGTCACTGCATTAGTTAAAGCTTATTCAGATCTTGGAGGGGATGCTGCTGACTGTTACAGACTCTTCTCTGAGACAAGCTGTCATCGGGATATTGCAGCGTGGACAGGCATTATGACAATATTTTCCGAGCGGGATCCTGAAGAAGCACTCTCCCTTTTTCGTCAATTACGCAGGGAGAATTTAGCTCCAGACAGGTATACCTTCTCAATTGTTTTAAAAGCCTATGCAAGCCTTGCAACCCAGCGCCATGCCTCGGCTGTTCATTCGCAAGTGATCAAAGGTGGGTTTGGGGGTGACACAGTCCTTGCAAACGCCTTGATCCATGCATATGCTCGGTGCGGCTCCATTTCCTTGTCTAAGCAAATTTTTGATGGAATTGAGTTTCGTGATGTTGTTTCTTGGAACACAATGCTCAAGGCTTATGCCTTGTATGGACAAGCTACAGAGGCACTGCAGCTTTTTACACAAATGGACATTAAACCTGATTCTGCTACCTTTGTTTCTCTCCTTTGTGCTTGTAGCCATGCTGGACTGGTAGAAGAAGGAACCAGAATCTTTGACTCCATGCTTGAAAGATATGGAATTGTACCTCTATGTGATCATTATGCATGCATGGTTGACATTCTTGGTCGAGCGGGACGAGTTGGTGAGGCTAAGAAGCTTGTAAGTAGAATGCCAATGGAGCCCGATTCCGTAGTTTGGAGTGCACTCCTTGGATCATGTAGGAAGCATGGAAATACACAGTTGGCCAAGTTAGCAGCTGATAGACTGAAGGAGTTGGCTCCAGAGGGTTCATTAGTTTATGTACAAATGTCAAACATATATAGCTCTGATGGTAACTTTGGTGAAGCGGGCCTAATTAGGAAGGAAATGAAAGGGTCTCGAGTGAAAAAGGAACCTGGATTAAGCTGGATTGAGATCGGAAATCAGGTGCATGAGTTCTCCTCGGGAGGCCGACGCCATCCAGAGAGGACTCTTATTAGCAGAAAACTAAAAGAACTGATTGGACGGTTAAGGGAAATTGGTTATGTTCCAGATACAAGCTCATCCTTGCATGATGTGGAAGAGGAGCACAAAGAGGAGCAATTGTACCATCATAGTGAGAAGCTAGCTTTAGTGTTTGCCATTATGAATGAAAGCAGTTTACATTGCGGTAGGACTGGTATAAAAATAATGAAGAATATCAGAGTATGCGTGGATTGCCACAACTTCATGAAGTTAGCATCAAATCTACTTCAAAAGGATATTGTTGTGAGAGACTCAAACCGTTTCCACCACTTTAAAGATGGCATATGTTCTTGCAATGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

599

Amino Acids

66.45

Weight (kDa)

6.37

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	190 - 236	3.1e-07	PPR repeat family
PPR_2	PF13041	289 - 334	1.5e-08	PPR repeat family
E_motif	PF20431	404 - 466	5e-15	E motif
DYW_deaminase	PF14432	502 - 598	3.4e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AccBSI	CCGCTC	2 cut(s)	610, 1115
AccI	GTMKAC	1 cut(s)	677
AciI	CCGC	5 cut(s)	610, 819, 1115, 1331, 1632
AclWI	GGATC	4 cut(s)	608, 621, 793, 1204
AcoI	YGGCCR	2 cut(s)	79, 1227
AcsI	RAATTY	3 cut(s)	256, 658, 843
AcuI	CTGAAG	2 cut(s)	639, 1271
AcyI	GRCGYC	1 cut(s)	1438
AfaI	GTAC	7 cut(s)	45, 90, 158, 318, 1068, 1287, 1571
AfiI	CCNNNNNNNGG	2 cut(s)	733, 1179
AgsI	TTSAA	4 cut(s)	106, 382, 1052, 1718
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	3 cut(s)	96, 251, 1378
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
Alw21I	GWGCWC	3 cut(s)	298, 1189, 1554
Alw26I	GTCTC	4 cut(s)	195, 545, 1365, 1731
Alw44I	GTGCAC	1 cut(s)	1185
AlwI	GGATC	4 cut(s)	608, 621, 793, 1204
Ama87I	CYCGRG	2 cut(s)	1362, 1426
AoxI	GGCC	4 cut(s)	79, 1227, 1333, 1432
ApaLI	GTGCAC	1 cut(s)	1185
ApeKI	GCWGC	5 cut(s)	7, 524, 575, 934, 1238
ApoI	RAATTY	3 cut(s)	256, 658, 843
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	1333
AsuC2I	CCSGG	2 cut(s)	238, 457
AsuHPI	GGTGA	4 cut(s)	5, 785, 1139, 1337
AsuNHI	GCTAGC	1 cut(s)	1588
AvaI	CYCGRG	2 cut(s)	1362, 1426
BaeGI	GKGCMC	1 cut(s)	1189
BalI	TGGCCA	1 cut(s)	1229
BamHI	GGATCC	1 cut(s)	613
BanII	GRGCYC	2 cut(s)	298, 1167
Bbv12I	GWGCWC	3 cut(s)	298, 1189, 1554
BbvI	GCAGC	4 cut(s)	511, 587, 946, 1250
BccI	CCATC	7 cut(s)	62, 326, 845, 1307, 1449, 1581, 1760
BciT130I	CCWGG	3 cut(s)	98, 253, 1380
BclI	TGATCA	3 cut(s)	172, 753, 1078
BcnI	CCSGG	2 cut(s)	238, 457
BcoDI	GTCTC	4 cut(s)	195, 545, 1365, 1731
BfaI	CTAG	1 cut(s)	1589
BfmI	CTRYAG	2 cut(s)	921, 932
BfoI	RGCGCY	1 cut(s)	727
BfuAI	ACCTGC	1 cut(s)	76
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	6 cut(s)	8, 525, 576, 820, 935, 1239
BlsI	GCNGC	6 cut(s)	9, 526, 577, 821, 936, 1240
Bme1390I	CCNGG	5 cut(s)	98, 238, 253, 457, 1380
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmeT110I	CYCGRG	2 cut(s)	1362, 1426
BmgT120I	GGNCC	1 cut(s)	1333
BmiI	GGNNCC	6 cut(s)	615, 823, 1027, 1164, 1263, 1377
BmrFI	CCNGG	5 cut(s)	98, 238, 253, 457, 1380
BmsI	GCATC	4 cut(s)	19, 109, 511, 1712
BmtI	GCTAGC	1 cut(s)	1592
BplI	GAGNNNNNCTC	2 cut(s)	1409, 1441
BpmI	CTGGAG	2 cut(s)	651, 1248
BpuEI	CTTGAG	2 cut(s)	282, 878
BpuMI	CCSGG	2 cut(s)	238, 457
BsaBI	GATNNNNATC	1 cut(s)	1397
BsaHI	GRCGYC	1 cut(s)	1438
BsaI	GGTCTC	1 cut(s)	1365
BsaJI	CCNNGG	5 cut(s)	96, 114, 732, 1192, 1425
BsaXI	ACNNNNNCTCC	2 cut(s)	1553, 1583
Bsc4I	CCNNNNNNNGG	2 cut(s)	733, 1179
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	3 cut(s)	1017, 1645, 1796
Bse3DI	GCAATG	3 cut(s)	132, 1627, 1789
Bse8I	GATNNNNATC	1 cut(s)	1397
BseBI	CCWGG	3 cut(s)	98, 253, 1380
BseDI	CCNNGG	5 cut(s)	96, 114, 732, 1192, 1425
BseGI	GGATG	4 cut(s)	124, 526, 1441, 1526
BseJI	GATNNNNATC	1 cut(s)	1397
BseLI	CCNNNNNNNGG	2 cut(s)	733, 1179
BseMI	GCAATG	3 cut(s)	132, 1627, 1789
BseMII	CTCAG	2 cut(s)	376, 540
BseNI	ACTGG	3 cut(s)	1017, 1645, 1796
BseRI	GAGGAG	3 cut(s)	1414, 1562, 1574
BseSI	GKGCMC	1 cut(s)	1189
BseXI	GCAGC	4 cut(s)	511, 587, 946, 1250
BseYI	CCCAGC	1 cut(s)	720
BshFI	GGCC	4 cut(s)	81, 1229, 1335, 1434
BsiHKAI	GWGCWC	3 cut(s)	298, 1189, 1554
BsiHKCI	CYCGRG	2 cut(s)	1362, 1426
BsiSI	CCGG	3 cut(s)	82, 238, 456
BslFI	GGGAC	1 cut(s)	1131
BslI	CCNNNNNNNGG	2 cut(s)	733, 1179
BsmAI	GTCTC	4 cut(s)	195, 545, 1365, 1731
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	1131
BsmI	GAATGC	2 cut(s)	145, 1158
BsnI	GGCC	4 cut(s)	81, 1229, 1335, 1434
Bso31I	GGTCTC	1 cut(s)	1365
BsoBI	CYCGRG	2 cut(s)	1362, 1426
Bsp1286I	GDGCHC	4 cut(s)	298, 1167, 1189, 1554
Bsp1407I	TGTACA	3 cut(s)	156, 316, 1285
Bsp143I	GATC	9 cut(s)	172, 307, 508, 613, 753, 798, 1078, 1196, 1398
BspACI	CCGC	5 cut(s)	610, 819, 1115, 1331, 1632
BspANI	GGCC	4 cut(s)	81, 1229, 1335, 1434
BspCNI	CTCAG	2 cut(s)	375, 541
BspHI	TCATGA	1 cut(s)	1692
BspLI	GGNNCC	6 cut(s)	615, 823, 1027, 1164, 1263, 1377
BspMAI	CTGCAG	1 cut(s)	936
BspMI	ACCTGC	1 cut(s)	76
BspOI	GCTAGC	1 cut(s)	1592
BspPI	GGATC	4 cut(s)	608, 621, 793, 1204
BspTNI	GGTCTC	1 cut(s)	1365
BsrBI	CCGCTC	2 cut(s)	610, 1115
BsrDI	GCAATG	3 cut(s)	132, 1627, 1789
BsrFI	RCCGGY	1 cut(s)	81
BsrGI	TGTACA	3 cut(s)	156, 316, 1285
BsrI	ACTGG	3 cut(s)	1017, 1645, 1796
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	5 cut(s)	96, 114, 732, 1192, 1425
BssMI	GATC	9 cut(s)	172, 307, 508, 613, 753, 798, 1078, 1196, 1398
BssNAI	GTATAC	1 cut(s)	678
BssNI	GRCGYC	1 cut(s)	1438
BssT1I	CCWWGG	2 cut(s)	114, 1192
Bst1107I	GTATAC	1 cut(s)	678
Bst2UI	CCWGG	3 cut(s)	98, 253, 1380
Bst4CI	ACNGT	6 cut(s)	350, 533, 781, 1224, 1491, 1748
Bst6I	CTCTTC	2 cut(s)	548, 1539
BstACI	GRCGYC	1 cut(s)	1438
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	3 cut(s)	156, 316, 1285
BstC8I	GCNNGC	7 cut(s)	40, 83, 124, 709, 1090, 1333, 1590
BstDEI	CTNAG	6 cut(s)	47, 362, 417, 549, 837, 1134
BstF5I	GGATG	4 cut(s)	124, 526, 1441, 1526
BstH2I	RGCGCY	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	9 cut(s)	175, 310, 511, 616, 756, 801, 1081, 1199, 1401
BstMAI	GTCTC	4 cut(s)	195, 545, 1365, 1731
BstMBI	GATC	9 cut(s)	172, 307, 508, 613, 753, 798, 1078, 1196, 1398
BstMWI	GCNNNNNNNGC	5 cut(s)	713, 926, 1162, 1235, 1680
BstNI	CCWGG	3 cut(s)	98, 253, 1380
BstNSI	RCATGY	1 cut(s)	1092
BstSCI	CCNGG	5 cut(s)	96, 236, 251, 455, 1378
BstSFI	CTRYAG	2 cut(s)	921, 932
BstSLI	GKGCMC	1 cut(s)	1189
BstV1I	GCAGC	4 cut(s)	511, 587, 946, 1250
BstX2I	RGATCY	2 cut(s)	508, 613
BstYI	RGATCY	2 cut(s)	508, 613
BstZ17I	GTATAC	1 cut(s)	678
BsuRI	GGCC	4 cut(s)	81, 1229, 1335, 1434
BtsCI	GGATG	4 cut(s)	124, 526, 1441, 1526
BtsI	GCAGTG	2 cut(s)	483, 929
BtsIMutI	CAGTG	3 cut(s)	284, 483, 929
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	7 cut(s)	40, 83, 124, 709, 1090, 1333, 1590
CciI	TCATGA	1 cut(s)	1692
CfoI	GCGC	1 cut(s)	726
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	1333
CseI	GACGC	2 cut(s)	355, 1446
Csp6I	GTAC	7 cut(s)	44, 89, 157, 317, 1067, 1286, 1570
CviQI	GTAC	7 cut(s)	44, 89, 157, 317, 1067, 1286, 1570
DdeI	CTNAG	6 cut(s)	47, 362, 417, 549, 837, 1134
DpnI	GATC	9 cut(s)	174, 309, 510, 615, 755, 800, 1080, 1198, 1400
DpnII	GATC	9 cut(s)	172, 307, 508, 613, 753, 798, 1078, 1196, 1398
DraI	TTTAAA	2 cut(s)	696, 1762
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	2 cut(s)	79, 1227
Eam1104I	CTCTTC	2 cut(s)	548, 1539
Eam1105I	GACNNNNNGTC	1 cut(s)	558
EarI	CTCTTC	2 cut(s)	548, 1539
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	114, 1192
Eco24I	GRGCYC	2 cut(s)	298, 1167
Eco31I	GGTCTC	1 cut(s)	1365
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	639, 1271
Eco88I	CYCGRG	2 cut(s)	1362, 1426
EcoICRI	GAGCTC	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	3 cut(s)	96, 251, 1378
EcoT14I	CCWWGG	2 cut(s)	114, 1192
EcoT22I	ATGCAT	3 cut(s)	808, 1090, 1094
EcoT38I	GRGCYC	2 cut(s)	298, 1167
ErhI	CCWWGG	2 cut(s)	114, 1192
Esp3I	CGTCTC	1 cut(s)	195
FaqI	GGGAC	1 cut(s)	1131
FauI	CCCGC	3 cut(s)	603, 1108, 1324
FauNDI	CATATG	2 cut(s)	808, 1772
FbaI	TGATCA	3 cut(s)	172, 753, 1078
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	6 cut(s)	8, 525, 576, 820, 935, 1239
FokI	GGATG	4 cut(s)	131, 533, 1428, 1513
FriOI	GRGCYC	2 cut(s)	298, 1167
Fsp4HI	GCNGC	6 cut(s)	8, 525, 576, 820, 935, 1239
FspBI	CTAG	1 cut(s)	1589
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	6 cut(s)	8, 525, 576, 820, 935, 1239
GsaI	CCCAGC	1 cut(s)	724
GsuI	CTGGAG	2 cut(s)	651, 1248
HaeII	RGCGCY	1 cut(s)	727
HaeIII	GGCC	4 cut(s)	81, 1229, 1335, 1434
HapII	CCGG	3 cut(s)	82, 238, 456
HgaI	GACGC	2 cut(s)	355, 1446
HhaI	GCGC	1 cut(s)	726
Hin1I	GRCGYC	1 cut(s)	1438
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HincII	GTYRAC	1 cut(s)	1099
HindII	GTYRAC	1 cut(s)	1099
HindIII	AAGCTT	2 cut(s)	498, 1139
HinfI	GANTC	9 cut(s)	233, 241, 540, 965, 1032, 1040, 1169, 1453, 1739
HpaII	CCGG	3 cut(s)	82, 238, 456
HphI	GGTGA	4 cut(s)	5, 785, 1139, 1337
Hpy166II	GTNNAC	9 cut(s)	91, 130, 222, 287, 582, 678, 1099, 1187, 1625
Hpy188I	TCNGA	6 cut(s)	508, 550, 607, 1312, 1403, 1667
Hpy8I	GTNNAC	9 cut(s)	91, 130, 222, 287, 582, 678, 1099, 1187, 1625
Hpy99I	CGWCG	1 cut(s)	1440
HpyAV	CCTTC	5 cut(s)	208, 691, 1016, 1246, 1339
HpyCH4III	ACNGT	6 cut(s)	350, 533, 781, 1224, 1491, 1748
HpyCH4IV	ACGT	2 cut(s)	192, 327
HpyF10VI	GCNNNNNNNGC	5 cut(s)	713, 926, 1162, 1235, 1680
HpyF3I	CTNAG	6 cut(s)	47, 362, 417, 549, 837, 1134
HpySE526I	ACGT	2 cut(s)	192, 327
Hsp92I	GRCGYC	1 cut(s)	1438
HspAI	GCGC	1 cut(s)	724
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Ksp22I	TGATCA	3 cut(s)	172, 753, 1078
Kzo9I	GATC	9 cut(s)	172, 307, 508, 613, 753, 798, 1078, 1196, 1398
LmnI	GCTCC	7 cut(s)	293, 670, 827, 1162, 1267, 1549, 1561
Lsp1109I	GCAGC	4 cut(s)	511, 587, 946, 1250
LweI	GCATC	4 cut(s)	19, 109, 511, 1712
MaeI	CTAG	1 cut(s)	1589
MaeII	ACGT	2 cut(s)	192, 327
MaeIII	GTNAC	5 cut(s)	412, 481, 533, 773, 1316
MalI	GATC	9 cut(s)	174, 309, 510, 615, 755, 800, 1080, 1198, 1400
MbiI	CCGCTC	2 cut(s)	610, 1115
MboI	GATC	9 cut(s)	172, 307, 508, 613, 753, 798, 1078, 1196, 1398
MboII	GAAGA	6 cut(s)	366, 535, 632, 1031, 1556, 1669
MfeI	CAATTG	2 cut(s)	687, 1565
MflI	RGATCY	2 cut(s)	508, 613
MhlI	GDGCHC	4 cut(s)	298, 1167, 1189, 1554
MlsI	TGGCCA	1 cut(s)	1229
MluNI	TGGCCA	1 cut(s)	1229
MlyI	GAGTC	4 cut(s)	534, 1034, 1447, 1733
Mox20I	TGGCCA	1 cut(s)	1229
Mph1103I	ATGCAT	3 cut(s)	808, 1090, 1094
MroNI	GCCGGC	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	1229
MseI	TTAA	6 cut(s)	495, 695, 957, 1385, 1493, 1761
MslI	CAYNNNNRTG	5 cut(s)	152, 180, 330, 807, 1578
Msp20I	TGGCCA	1 cut(s)	1229
MspA1I	CMGCKG	1 cut(s)	1241
MspI	CCGG	3 cut(s)	82, 238, 456
MspR9I	CCNGG	5 cut(s)	98, 238, 253, 457, 1380
MunI	CAATTG	2 cut(s)	687, 1565
Mva1269I	GAATGC	2 cut(s)	145, 1158
MvaI	CCWGG	3 cut(s)	98, 253, 1380
MwoI	GCNNNNNNNGC	5 cut(s)	713, 926, 1162, 1235, 1680
NaeI	GCCGGC	1 cut(s)	83
NciI	CCSGG	2 cut(s)	238, 457
NdeI	CATATG	2 cut(s)	808, 1772
NdeII	GATC	9 cut(s)	172, 307, 508, 613, 753, 798, 1078, 1196, 1398
NgoMIV	GCCGGC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	1588
NlaIV	GGNNCC	6 cut(s)	615, 823, 1027, 1164, 1263, 1377
NmeAIII	GCCGAG	1 cut(s)	713
NmuCI	GTSAC	3 cut(s)	412, 481, 773
NsiI	ATGCAT	3 cut(s)	808, 1090, 1094
NspI	RCATGY	1 cut(s)	1092
PaeI	GCATGC	1 cut(s)	1092
PaeR7I	CTCGAG	1 cut(s)	1362
PagI	TCATGA	1 cut(s)	1692
PcsI	WCGNNNNNNNCGW	1 cut(s)	1117
PctI	GAATGC	2 cut(s)	145, 1158
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	5 cut(s)	233, 241, 965, 1032, 1169
PflFI	GACNNNGTC	1 cut(s)	779
PfoI	TCCNGGA	2 cut(s)	236, 251
PkrI	GCNGC	6 cut(s)	9, 526, 577, 821, 936, 1240
PleI	GAGTC	4 cut(s)	534, 1034, 1447, 1733
PpsI	GAGTC	4 cut(s)	534, 1034, 1447, 1733
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	3 cut(s)	96, 251, 1378
PspFI	CCCAGC	1 cut(s)	720
PspGI	CCWGG	3 cut(s)	96, 251, 1378
PspN4I	GGNNCC	6 cut(s)	615, 823, 1027, 1164, 1263, 1377
PspPI	GGNCC	1 cut(s)	1333
PstI	CTGCAG	1 cut(s)	936
PsuI	RGATCY	2 cut(s)	508, 613
PsyI	GACNNNGTC	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	1241
RsaI	GTAC	7 cut(s)	45, 90, 158, 318, 1068, 1287, 1571
RsaNI	GTAC	7 cut(s)	44, 89, 157, 317, 1067, 1286, 1570
RseI	CAYNNNNRTG	5 cut(s)	152, 180, 330, 807, 1578
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	6 cut(s)	495, 695, 957, 1385, 1493, 1761
SatI	GCNGC	6 cut(s)	8, 525, 576, 820, 935, 1239
Sau3AI	GATC	9 cut(s)	172, 307, 508, 613, 753, 798, 1078, 1196, 1398
Sau96I	GGNCC	1 cut(s)	1333
SchI	GAGTC	4 cut(s)	534, 1034, 1447, 1733
ScrFI	CCNGG	5 cut(s)	98, 238, 253, 457, 1380
SduI	GDGCHC	4 cut(s)	298, 1167, 1189, 1554
SfaNI	GCATC	4 cut(s)	19, 109, 511, 1712
SfcI	CTRYAG	2 cut(s)	921, 932
Sfr274I	CTCGAG	1 cut(s)	1362
SlaI	CTCGAG	1 cut(s)	1362
SmiMI	CAYNNNNRTG	5 cut(s)	152, 180, 330, 807, 1578
SmlI	CTYRAG	3 cut(s)	297, 893, 1362
SmoI	CTYRAG	3 cut(s)	297, 893, 1362
SphI	GCATGC	1 cut(s)	1092
SsiI	CCGC	5 cut(s)	610, 819, 1115, 1331, 1632
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	1 cut(s)	1589
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	5 cut(s)	96, 236, 251, 455, 1378
StyI	CCWWGG	2 cut(s)	114, 1192
TaaI	ACNGT	6 cut(s)	350, 533, 781, 1224, 1491, 1748
TaiI	ACGT	2 cut(s)	195, 330
TaqI	TCGA	2 cut(s)	1111, 1363
TatI	WGTACW	3 cut(s)	156, 316, 1285
TauI	GCSGC	1 cut(s)	822
TfiI	GAWTC	5 cut(s)	233, 241, 965, 1032, 1169
Tru1I	TTAA	6 cut(s)	495, 695, 957, 1385, 1493, 1761
Tru9I	TTAA	6 cut(s)	495, 695, 957, 1385, 1493, 1761
TscAI	CASTG	3 cut(s)	284, 490, 936
TseFI	GTSAC	3 cut(s)	412, 481, 773
TseI	GCWGC	5 cut(s)	7, 524, 575, 934, 1238
Tsp45I	GTSAC	3 cut(s)	412, 481, 773
TspDTI	ATGAA	8 cut(s)	731, 1263, 1367, 1625, 1629, 1670, 1681, 1709
TspGWI	ACGGA	1 cut(s)	1162
TspRI	CASTG	3 cut(s)	284, 490, 936
Tth111I	GACNNNGTC	1 cut(s)	779
VneI	GTGCAC	1 cut(s)	1185
XapI	RAATTY	3 cut(s)	256, 658, 843
XceI	RCATGY	1 cut(s)	1092
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1763
XhoI	CTCGAG	1 cut(s)	1362
XmiI	GTMKAC	1 cut(s)	677
XspI	CTAG	1 cut(s)	1589
Zsp2I	ATGCAT	3 cut(s)	808, 1090, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.