Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 180 | 6e-52 | TIR domain |
| TIR_2 | PF13676 | 15 - 111 | 8.1e-15 | TIR domain |
| NB-ARC | PF00931 | 214 - 367 | 1.5e-15 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 433 - 504 | 1e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| PPR_2 | PF13041 | 876 - 922 | 3.1e-06 | PPR repeat family |
| PPR_2 | PF13041 | 1092 - 1138 | 1.6e-07 | PPR repeat family |
| PPR_2 | PF13041 | 1191 - 1236 | 2e-08 | PPR repeat family |
| E_motif | PF20431 | 1306 - 1368 | 1.1e-14 | E motif |
| DYW_deaminase | PF14432 | 1404 - 1500 | 1.2e-35 | DYW family of nucleic acid deaminases |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 125, 4166 |
| AarI | CACCTGC | 1 cut(s) | 95 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2540 |
| AatII | GACGTC | 1 cut(s) | 8 |
| Acc36I | ACCTGC | 4 cut(s) | 95, 2215, 2334, 2782 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1215, 2503 |
| AccBSI | CCGCTC | 2 cut(s) | 2645, 3316 |
| AccI | GTMKAC | 2 cut(s) | 25, 3383 |
| AccII | CGCG | 5 cut(s) | 75, 2262, 2264, 2371, 2373 |
| AclWI | GGATC | 7 cut(s) | 166, 652, 665, 927, 1365, 3499, 3910 |
| AcoI | YGGCCR | 5 cut(s) | 481, 2364, 2374, 2785, 3933 |
| AcsI | RAATTY | 8 cut(s) | 229, 500, 714, 724, 1609, 2573, 2962, 3364 |
| AcuI | CTGAAG | 7 cut(s) | 40, 1259, 1592, 1880, 2135, 2186, 3345 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 1567 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 246, 352, 635, 1215, 1403, 2503, 3439 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 302, 1456, 3264 |
| AjiI | CACGTC | 2 cut(s) | 2783, 2996 |
| AjnI | CCWGG | 6 cut(s) | 147, 1396, 1522, 2361, 2636, 4084 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 1102, 1134, 1386, 1418, 1892, 1924, 2804, 2836 |
| AleI | CACNNNNGTG | 1 cut(s) | 2454 |
| Alw21I | GWGCWC | 5 cut(s) | 106, 2461, 3004, 3895, 4260 |
| Alw26I | GTCTC | 7 cut(s) | 71, 1551, 2548, 2901, 3251, 4071, 4437 |
| Alw44I | GTGCAC | 2 cut(s) | 102, 3891 |
| AlwI | GGATC | 7 cut(s) | 166, 652, 665, 927, 1365, 3499, 3910 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 860, 1884 |
| Ama87I | CYCGRG | 2 cut(s) | 3044, 4068 |
| ApaI | GGGCCC | 1 cut(s) | 2362 |
| ApaLI | GTGCAC | 2 cut(s) | 102, 3891 |
| ApeKI | GCWGC | 7 cut(s) | 631, 860, 2085, 3230, 3626, 3640, 3944 |
| ApoI | RAATTY | 8 cut(s) | 229, 500, 714, 724, 1609, 2573, 2962, 3364 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 27, 1781, 1813 |
| AseI | ATTAAT | 1 cut(s) | 1905 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 589, 801, 1065, 1100, 1497 |
| AspLEI | GCGC | 6 cut(s) | 345, 2264, 2373, 3074, 3196, 3432 |
| AspS9I | GGNCC | 9 cut(s) | 170, 329, 968, 1881, 2358, 2359, 2640, 3319, 4039 |
| AsuC2I | CCSGG | 5 cut(s) | 972, 2656, 2944, 3163, 3359 |
| AsuII | TTCGAA | 1 cut(s) | 2929 |
| AsuNHI | GCTAGC | 1 cut(s) | 4294 |
| AvaI | CYCGRG | 2 cut(s) | 3044, 4068 |
| AvaII | GGWCC | 6 cut(s) | 329, 968, 1881, 2640, 3319, 4039 |
| BaeGI | GKGCMC | 3 cut(s) | 106, 2362, 3895 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4109, 4142 |
| BalI | TGGCCA | 3 cut(s) | 483, 2366, 3935 |
| BamHI | GGATCC | 1 cut(s) | 657 |
| BanII | GRGCYC | 3 cut(s) | 2362, 3004, 3873 |
| BauI | CACGAG | 1 cut(s) | 1053 |
| BbsI | GAAGAC | 1 cut(s) | 1736 |
| Bbv12I | GWGCWC | 5 cut(s) | 106, 2461, 3004, 3895, 4260 |
| BbvCI | CCTCAGC | 1 cut(s) | 2111 |
| BbvI | GCAGC | 7 cut(s) | 643, 847, 2072, 3217, 3613, 3652, 3956 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3416, 3450 |
| BciT130I | CCWGG | 6 cut(s) | 149, 1398, 1524, 2363, 2638, 4086 |
| BciVI | GTATCC | 2 cut(s) | 1733, 2023 |
| BclI | TGATCA | 3 cut(s) | 2232, 2878, 3784 |
| BcnI | CCSGG | 5 cut(s) | 972, 2656, 2944, 3163, 3359 |
| BcoDI | GTCTC | 7 cut(s) | 71, 1551, 2548, 2901, 3251, 4071, 4437 |
| BfaI | CTAG | 7 cut(s) | 698, 782, 1295, 1376, 1391, 3197, 4295 |
| BfmI | CTRYAG | 5 cut(s) | 1551, 1692, 2086, 3627, 3638 |
| BfoI | RGCGCY | 2 cut(s) | 3075, 3433 |
| BfuAI | ACCTGC | 4 cut(s) | 95, 2215, 2334, 2782 |
| BfuI | GTATCC | 2 cut(s) | 1733, 2023 |
| BglII | AGATCT | 2 cut(s) | 1759, 3214 |
| Bme18I | GGWCC | 6 cut(s) | 329, 968, 1881, 2640, 3319, 4039 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 302, 1456, 3264 |
| BmeT110I | CYCGRG | 2 cut(s) | 3044, 4068 |
| BmgBI | CACGTC | 2 cut(s) | 2783, 2996 |
| BmgT120I | GGNCC | 9 cut(s) | 170, 329, 968, 1881, 2358, 2359, 2640, 3319, 4039 |
| BmrI | ACTGGG | 1 cut(s) | 1053 |
| BmsI | GCATC | 8 cut(s) | 20, 427, 1452, 1884, 2232, 2815, 3217, 4418 |
| BmtI | GCTAGC | 1 cut(s) | 4298 |
| BmuI | ACTGGG | 1 cut(s) | 1053 |
| BpiI | GAAGAC | 1 cut(s) | 1736 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4115, 4147 |
| BpmI | CTGGAG | 5 cut(s) | 170, 2514, 3357, 3954, 4155 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1013, 1152, 2111 |
| Bpu14I | TTCGAA | 1 cut(s) | 2929 |
| BpuEI | CTTGAG | 6 cut(s) | 184, 1439, 2988, 3438, 3584, 3776 |
| BpuMI | CCSGG | 5 cut(s) | 972, 2656, 2944, 3163, 3359 |
| BsaBI | GATNNNNATC | 2 cut(s) | 918, 4103 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 2 cut(s) | 1551, 4071 |
| BsaJI | CCNNGG | 6 cut(s) | 484, 661, 971, 2361, 3438, 3898 |
| BsaWI | WCCGGW | 2 cut(s) | 1725, 2296 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 4259, 4289 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 246, 352, 635, 1215, 1403, 2503, 3439 |
| Bse118I | RCCGGY | 1 cut(s) | 2787 |
| Bse1I | ACTGG | 6 cut(s) | 965, 1048, 1998, 3723, 4351, 4502 |
| Bse3DI | GCAATG | 3 cut(s) | 1326, 4333, 4495 |
| Bse8I | GATNNNNATC | 2 cut(s) | 918, 4103 |
| BseBI | CCWGG | 6 cut(s) | 149, 1398, 1524, 2363, 2638, 4086 |
| BseDI | CCNNGG | 6 cut(s) | 484, 661, 971, 2361, 3438, 3898 |
| BseJI | GATNNNNATC | 2 cut(s) | 918, 4103 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 246, 352, 635, 1215, 1403, 2503, 3439 |
| BseMI | GCAATG | 3 cut(s) | 1326, 4333, 4495 |
| BseMII | CTCAG | 8 cut(s) | 1166, 1832, 2102, 2170, 3082, 3246, 3303, 3831 |
| BseNI | ACTGG | 6 cut(s) | 965, 1048, 1998, 3723, 4351, 4502 |
| BseRI | GAGGAG | 5 cut(s) | 2517, 3683, 4120, 4268, 4280 |
| BseSI | GKGCMC | 3 cut(s) | 106, 2362, 3895 |
| BseXI | GCAGC | 7 cut(s) | 643, 847, 2072, 3217, 3613, 3652, 3956 |
| BsgI | GTGCAG | 1 cut(s) | 2477 |
| Bsh1236I | CGCG | 5 cut(s) | 75, 2262, 2264, 2371, 2373 |
| BsiHKAI | GWGCWC | 5 cut(s) | 106, 2461, 3004, 3895, 4260 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3044, 4068 |
| BsiSI | CCGG | 8 cut(s) | 971, 1726, 2297, 2655, 2788, 2944, 3162, 3358 |
| BslFI | GGGAC | 4 cut(s) | 309, 971, 1495, 3332 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 246, 352, 635, 1215, 1403, 2503, 3439 |
| BsmAI | GTCTC | 7 cut(s) | 71, 1551, 2548, 2901, 3251, 4071, 4437 |
| BsmBI | CGTCTC | 1 cut(s) | 2901 |
| BsmFI | GGGAC | 4 cut(s) | 309, 971, 1495, 3332 |
| BsmI | GAATGC | 2 cut(s) | 2851, 3864 |
| Bso31I | GGTCTC | 2 cut(s) | 1551, 4071 |
| BsoBI | CYCGRG | 2 cut(s) | 3044, 4068 |
| Bsp119I | TTCGAA | 1 cut(s) | 2929 |
| Bsp120I | GGGCCC | 1 cut(s) | 2358 |
| Bsp1286I | GDGCHC | 7 cut(s) | 106, 2362, 2461, 3004, 3873, 3895, 4260 |
| Bsp1407I | TGTACA | 5 cut(s) | 884, 1338, 2132, 3022, 3991 |
| Bsp19I | CCATGG | 2 cut(s) | 484, 661 |
| BspCNI | CTCAG | 8 cut(s) | 1165, 1833, 2103, 2169, 3081, 3247, 3304, 3832 |
| BspFNI | CGCG | 5 cut(s) | 75, 2262, 2264, 2371, 2373 |
| BspHI | TCATGA | 1 cut(s) | 4398 |
| BspMAI | CTGCAG | 4 cut(s) | 1555, 2090, 3631, 3642 |
| BspMI | ACCTGC | 4 cut(s) | 95, 2215, 2334, 2782 |
| BspOI | GCTAGC | 1 cut(s) | 4298 |
| BspPI | GGATC | 7 cut(s) | 166, 652, 665, 927, 1365, 3499, 3910 |
| BspQI | GCTCTTC | 2 cut(s) | 2415, 3254 |
| BspT104I | TTCGAA | 1 cut(s) | 2929 |
| BspTNI | GGTCTC | 2 cut(s) | 1551, 4071 |
| BsrBI | CCGCTC | 2 cut(s) | 2645, 3316 |
| BsrDI | GCAATG | 3 cut(s) | 1326, 4333, 4495 |
| BsrFI | RCCGGY | 1 cut(s) | 2787 |
| BsrGI | TGTACA | 5 cut(s) | 884, 1338, 2132, 3022, 3991 |
| BsrI | ACTGG | 6 cut(s) | 965, 1048, 1998, 3723, 4351, 4502 |
| BssAI | RCCGGY | 1 cut(s) | 2787 |
| BssECI | CCNNGG | 6 cut(s) | 484, 661, 971, 2361, 3438, 3898 |
| BssNAI | GTATAC | 1 cut(s) | 3384 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssSI | CACGAG | 1 cut(s) | 1053 |
| BssT1I | CCWWGG | 3 cut(s) | 484, 661, 3898 |
| Bst1107I | GTATAC | 1 cut(s) | 3384 |
| Bst2BI | CACGAG | 1 cut(s) | 1053 |
| Bst2UI | CCWGG | 6 cut(s) | 149, 1398, 1524, 2363, 2638, 4086 |
| Bst4CI | ACNGT | 9 cut(s) | 376, 879, 2604, 3056, 3239, 3487, 3930, 4197, 4454 |
| Bst6I | CTCTTC | 6 cut(s) | 562, 2405, 2415, 2450, 3254, 4245 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 110, 1471, 3419 |
| BstAUI | TGTACA | 5 cut(s) | 884, 1338, 2132, 3022, 3991 |
| BstBI | TTCGAA | 1 cut(s) | 2929 |
| BstDSI | CCRYGG | 2 cut(s) | 484, 661 |
| BstFNI | CGCG | 5 cut(s) | 75, 2262, 2264, 2371, 2373 |
| BstH2I | RGCGCY | 2 cut(s) | 3075, 3433 |
| BstHHI | GCGC | 6 cut(s) | 345, 2264, 2373, 3074, 3196, 3432 |
| BstMAI | GTCTC | 7 cut(s) | 71, 1551, 2548, 2901, 3251, 4071, 4437 |
| BstNI | CCWGG | 6 cut(s) | 149, 1398, 1524, 2363, 2638, 4086 |
| BstNSI | RCATGY | 2 cut(s) | 670, 2457 |
| BstSFI | CTRYAG | 5 cut(s) | 1551, 1692, 2086, 3627, 3638 |
| BstSLI | GKGCMC | 3 cut(s) | 106, 2362, 3895 |
| BstUI | CGCG | 5 cut(s) | 75, 2262, 2264, 2371, 2373 |
| BstV1I | GCAGC | 7 cut(s) | 643, 847, 2072, 3217, 3613, 3652, 3956 |
| BstV2I | GAAGAC | 1 cut(s) | 1736 |
| BstX2I | RGATCY | 3 cut(s) | 657, 1759, 3214 |
| BstYI | RGATCY | 3 cut(s) | 657, 1759, 3214 |
| BstZ17I | GTATAC | 1 cut(s) | 3384 |
| BsuI | GTATCC | 2 cut(s) | 1733, 2023 |
| BtgI | CCRYGG | 2 cut(s) | 484, 661 |
| BtgZI | GCGATG | 1 cut(s) | 2787 |
| BtrI | CACGTC | 2 cut(s) | 2783, 2996 |
| BtsI | GCAGTG | 4 cut(s) | 1791, 2419, 3189, 3635 |
| BtsIMutI | CAGTG | 7 cut(s) | 1791, 1991, 2135, 2419, 2990, 3189, 3635 |
| BveI | ACCTGC | 4 cut(s) | 95, 2215, 2334, 2782 |
| CaiI | CAGNNNCTG | 2 cut(s) | 860, 1884 |
| CciI | TCATGA | 1 cut(s) | 4398 |
| CfoI | GCGC | 6 cut(s) | 345, 2264, 2373, 3074, 3196, 3432 |
| Cfr10I | RCCGGY | 1 cut(s) | 2787 |
| Cfr13I | GGNCC | 9 cut(s) | 170, 329, 968, 1881, 2358, 2359, 2640, 3319, 4039 |
| CpoI | CGGWCCG | 1 cut(s) | 968 |
| CseI | GACGC | 1 cut(s) | 2722 |
| CspI | CGGWCCG | 1 cut(s) | 968 |
| DraI | TTTAAA | 4 cut(s) | 1083, 1410, 3402, 4468 |
| DraIII | CACNNNGTG | 1 cut(s) | 1567 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2540 |
| DriI | GACNNNNNGTC | 3 cut(s) | 302, 1456, 3264 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2540 |
| EaeI | YGGCCR | 5 cut(s) | 481, 2364, 2374, 2785, 3933 |
| Eam1104I | CTCTTC | 6 cut(s) | 562, 2405, 2415, 2450, 3254, 4245 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 302, 1456, 3264 |
| EarI | CTCTTC | 6 cut(s) | 562, 2405, 2415, 2450, 3254, 4245 |
| Ecl136II | GAGCTC | 1 cut(s) | 3002 |
| Eco130I | CCWWGG | 3 cut(s) | 484, 661, 3898 |
| Eco147I | AGGCCT | 1 cut(s) | 2484 |
| Eco24I | GRGCYC | 3 cut(s) | 2362, 3004, 3873 |
| Eco31I | GGTCTC | 2 cut(s) | 1551, 4071 |
| Eco47I | GGWCC | 6 cut(s) | 329, 968, 1881, 2640, 3319, 4039 |
| Eco53kI | GAGCTC | 1 cut(s) | 3002 |
| Eco57I | CTGAAG | 7 cut(s) | 40, 1259, 1592, 1880, 2135, 2186, 3345 |
| Eco88I | CYCGRG | 2 cut(s) | 3044, 4068 |
| EcoICRI | GAGCTC | 1 cut(s) | 3002 |
| EcoO109I | RGGNCCY | 5 cut(s) | 329, 1881, 2358, 2359, 3319 |
| EcoRI | GAATTC | 1 cut(s) | 2962 |
| EcoRII | CCWGG | 6 cut(s) | 147, 1396, 1522, 2361, 2636, 4084 |
| EcoT14I | CCWWGG | 3 cut(s) | 484, 661, 3898 |
| EcoT22I | ATGCAT | 2 cut(s) | 1467, 3514 |
| EcoT38I | GRGCYC | 3 cut(s) | 2362, 3004, 3873 |
| ErhI | CCWWGG | 3 cut(s) | 484, 661, 3898 |
| Esp3I | CGTCTC | 1 cut(s) | 2901 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 786, 818, 1085, 1117 |
| FaqI | GGGAC | 4 cut(s) | 309, 971, 1495, 3332 |
| FauI | CCCGC | 7 cut(s) | 80, 602, 663, 2324, 2661, 3309, 3461 |
| FauNDI | CATATG | 3 cut(s) | 623, 3514, 4478 |
| FbaI | TGATCA | 3 cut(s) | 2232, 2878, 3784 |
| FblI | GTMKAC | 2 cut(s) | 25, 3383 |
| FriOI | GRGCYC | 3 cut(s) | 2362, 3004, 3873 |
| FspBI | CTAG | 7 cut(s) | 698, 782, 1295, 1376, 1391, 3197, 4295 |
| GlaI | GCGC | 6 cut(s) | 344, 2263, 2372, 3073, 3195, 3431 |
| GsuI | CTGGAG | 5 cut(s) | 170, 2514, 3357, 3954, 4155 |
| HaeII | RGCGCY | 2 cut(s) | 3075, 3433 |
| HapII | CCGG | 8 cut(s) | 971, 1726, 2297, 2655, 2788, 2944, 3162, 3358 |
| HgaI | GACGC | 1 cut(s) | 2722 |
| HhaI | GCGC | 6 cut(s) | 345, 2264, 2373, 3074, 3196, 3432 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin6I | GCGC | 6 cut(s) | 343, 2262, 2371, 3072, 3194, 3430 |
| HinP1I | GCGC | 6 cut(s) | 343, 2262, 2371, 3072, 3194, 3430 |
| HincII | GTYRAC | 7 cut(s) | 9, 26, 520, 568, 1050, 2712, 3805 |
| HindII | GTYRAC | 7 cut(s) | 9, 26, 520, 568, 1050, 2712, 3805 |
| HindIII | AAGCTT | 7 cut(s) | 52, 1862, 1892, 2168, 2186, 3204, 3845 |
| HpaI | GTTAAC | 2 cut(s) | 520, 1050 |
| HpaII | CCGG | 8 cut(s) | 971, 1726, 2297, 2655, 2788, 2944, 3162, 3358 |
| Hpy99I | CGWCG | 3 cut(s) | 27, 30, 1506 |
| HpyCH4III | ACNGT | 9 cut(s) | 376, 879, 2604, 3056, 3239, 3487, 3930, 4197, 4454 |
| HpyCH4IV | ACGT | 7 cut(s) | 5, 2238, 2782, 2838, 2995, 3062, 3660 |
| HpySE526I | ACGT | 7 cut(s) | 5, 2238, 2782, 2838, 2995, 3062, 3660 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| HspAI | GCGC | 6 cut(s) | 343, 2262, 2371, 3072, 3194, 3430 |
| KflI | GGGWCCC | 1 cut(s) | 3319 |
| KroI | GCCGGC | 1 cut(s) | 2787 |
| KroNI | GCCGGC | 1 cut(s) | 2789 |
| Ksp22I | TGATCA | 3 cut(s) | 2232, 2878, 3784 |
| KspAI | GTTAAC | 2 cut(s) | 520, 1050 |
| LguI | GCTCTTC | 2 cut(s) | 2415, 3254 |
| LmnI | GCTCC | 8 cut(s) | 372, 2999, 3376, 3533, 3868, 3973, 4255, 4267 |
| Lsp1109I | GCAGC | 7 cut(s) | 643, 847, 2072, 3217, 3613, 3652, 3956 |
| LweI | GCATC | 8 cut(s) | 20, 427, 1452, 1884, 2232, 2815, 3217, 4418 |
| MaeI | CTAG | 7 cut(s) | 698, 782, 1295, 1376, 1391, 3197, 4295 |
| MaeII | ACGT | 7 cut(s) | 5, 2238, 2782, 2838, 2995, 3062, 3660 |
| MbiI | CCGCTC | 2 cut(s) | 2645, 3316 |
| MfeI | CAATTG | 4 cut(s) | 2056, 2683, 3137, 4271 |
| MflI | RGATCY | 3 cut(s) | 657, 1759, 3214 |
| MhlI | GDGCHC | 7 cut(s) | 106, 2362, 2461, 3004, 3873, 3895, 4260 |
| MlsI | TGGCCA | 3 cut(s) | 483, 2366, 3935 |
| MluNI | TGGCCA | 3 cut(s) | 483, 2366, 3935 |
| MlyI | GAGTC | 6 cut(s) | 191, 1517, 2189, 3036, 3740, 4439 |
| MmeI | TCCRAC | 2 cut(s) | 2500, 2571 |
| Mox20I | TGGCCA | 3 cut(s) | 483, 2366, 3935 |
| Mph1103I | ATGCAT | 2 cut(s) | 1467, 3514 |
| MroNI | GCCGGC | 1 cut(s) | 2787 |
| MroXI | GAANNNNTTC | 5 cut(s) | 589, 801, 1065, 1100, 1497 |
| MscI | TGGCCA | 3 cut(s) | 483, 2366, 3935 |
| Msp20I | TGGCCA | 3 cut(s) | 483, 2366, 3935 |
| MspA1I | CMGCKG | 2 cut(s) | 2668, 3947 |
| MspI | CCGG | 8 cut(s) | 971, 1726, 2297, 2655, 2788, 2944, 3162, 3358 |
| MunI | CAATTG | 4 cut(s) | 2056, 2683, 3137, 4271 |
| Mva1269I | GAATGC | 2 cut(s) | 2851, 3864 |
| MvaI | CCWGG | 6 cut(s) | 149, 1398, 1524, 2363, 2638, 4086 |
| MvnI | CGCG | 5 cut(s) | 75, 2262, 2264, 2371, 2373 |
| NaeI | GCCGGC | 1 cut(s) | 2789 |
| NciI | CCSGG | 5 cut(s) | 972, 2656, 2944, 3163, 3359 |
| NcoI | CCATGG | 2 cut(s) | 484, 661 |
| NdeI | CATATG | 3 cut(s) | 623, 3514, 4478 |
| NgoMIV | GCCGGC | 1 cut(s) | 2787 |
| NheI | GCTAGC | 1 cut(s) | 4294 |
| NmeAIII | GCCGAG | 2 cut(s) | 2325, 3419 |
| NmuCI | GTSAC | 6 cut(s) | 988, 1363, 1787, 2632, 3187, 3479 |
| NsiI | ATGCAT | 2 cut(s) | 1467, 3514 |
| NspI | RCATGY | 2 cut(s) | 670, 2457 |
| NspV | TTCGAA | 1 cut(s) | 2929 |
| OliI | CACNNNNGTG | 1 cut(s) | 2454 |
| PaeI | GCATGC | 1 cut(s) | 670 |
| PaeR7I | CTCGAG | 2 cut(s) | 3044, 4068 |
| PagI | TCATGA | 1 cut(s) | 4398 |
| PaqCI | CACCTGC | 1 cut(s) | 95 |
| PceI | AGGCCT | 1 cut(s) | 2484 |
| PciSI | GCTCTTC | 2 cut(s) | 2415, 3254 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 11, 213, 3823 |
| PctI | GAATGC | 2 cut(s) | 2851, 3864 |
| PdiI | GCCGGC | 1 cut(s) | 2789 |
| PdmI | GAANNNNTTC | 5 cut(s) | 589, 801, 1065, 1100, 1497 |
| PfeI | GAWTC | 9 cut(s) | 204, 271, 590, 2939, 2947, 3671, 3738, 3875, 4159 |
| PflFI | GACNNNGTC | 1 cut(s) | 3485 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1215, 2503 |
| PfoI | TCCNGGA | 1 cut(s) | 2942 |
| PleI | GAGTC | 6 cut(s) | 191, 1516, 2188, 3036, 3740, 4439 |
| PpsI | GAGTC | 6 cut(s) | 191, 1516, 2188, 3036, 3740, 4439 |
| PpuMI | RGGWCCY | 3 cut(s) | 329, 1881, 3319 |
| PshBI | ATTAAT | 1 cut(s) | 1905 |
| PsiI | TTATAA | 2 cut(s) | 125, 4166 |
| Psp124BI | GAGCTC | 1 cut(s) | 3004 |
| Psp5II | RGGWCCY | 3 cut(s) | 329, 1881, 3319 |
| Psp6I | CCWGG | 6 cut(s) | 147, 1396, 1522, 2361, 2636, 4084 |
| PspGI | CCWGG | 6 cut(s) | 147, 1396, 1522, 2361, 2636, 4084 |
| PspOMI | GGGCCC | 1 cut(s) | 2358 |
| PspPI | GGNCC | 9 cut(s) | 170, 329, 968, 1881, 2358, 2359, 2640, 3319, 4039 |
| PspPPI | RGGWCCY | 3 cut(s) | 329, 1881, 3319 |
| PspXI | VCTCGAGB | 1 cut(s) | 3044 |
| PstI | CTGCAG | 4 cut(s) | 1555, 2090, 3631, 3642 |
| PstNI | CAGNNNCTG | 2 cut(s) | 860, 1884 |
| PsuI | RGATCY | 3 cut(s) | 657, 1759, 3214 |
| PsyI | GACNNNGTC | 1 cut(s) | 3485 |
| PvuII | CAGCTG | 1 cut(s) | 3947 |
| Rsr2I | CGGWCCG | 1 cut(s) | 968 |
| RsrII | CGGWCCG | 1 cut(s) | 968 |
| SacI | GAGCTC | 1 cut(s) | 3004 |
| SalI | GTCGAC | 1 cut(s) | 24 |
| SapI | GCTCTTC | 2 cut(s) | 2415, 3254 |
| Sau96I | GGNCC | 9 cut(s) | 170, 329, 968, 1881, 2358, 2359, 2640, 3319, 4039 |
| SchI | GAGTC | 6 cut(s) | 191, 1517, 2189, 3036, 3740, 4439 |
| SduI | GDGCHC | 7 cut(s) | 106, 2362, 2461, 3004, 3873, 3895, 4260 |
| SfaNI | GCATC | 8 cut(s) | 20, 427, 1452, 1884, 2232, 2815, 3217, 4418 |
| SfcI | CTRYAG | 5 cut(s) | 1551, 1692, 2086, 3627, 3638 |
| Sfr274I | CTCGAG | 2 cut(s) | 3044, 4068 |
| SfuI | TTCGAA | 1 cut(s) | 2929 |
| SgrDI | CGTCGACG | 1 cut(s) | 24 |
| SinI | GGWCC | 6 cut(s) | 329, 968, 1881, 2640, 3319, 4039 |
| SlaI | CTCGAG | 2 cut(s) | 3044, 4068 |
| SmlI | CTYRAG | 8 cut(s) | 199, 1418, 3003, 3044, 3453, 3599, 3755, 4068 |
| SmoI | CTYRAG | 8 cut(s) | 199, 1418, 3003, 3044, 3453, 3599, 3755, 4068 |
| SphI | GCATGC | 1 cut(s) | 670 |
| SseBI | AGGCCT | 1 cut(s) | 2484 |
| SspI | AATATT | 1 cut(s) | 3306 |
| SspMI | CTAG | 7 cut(s) | 698, 782, 1295, 1376, 1391, 3197, 4295 |
| SstI | GAGCTC | 1 cut(s) | 3004 |
| StuI | AGGCCT | 1 cut(s) | 2484 |
| StyI | CCWWGG | 3 cut(s) | 484, 661, 3898 |
| TaaI | ACNGT | 9 cut(s) | 376, 879, 2604, 3056, 3239, 3487, 3930, 4197, 4454 |
| TaiI | ACGT | 7 cut(s) | 8, 2241, 2785, 2841, 2998, 3065, 3663 |
| TaqII | GACCGA | 2 cut(s) | 747, 956 |
| TatI | WGTACW | 7 cut(s) | 510, 884, 1223, 1338, 2132, 3022, 3991 |
| TauI | GCSGC | 3 cut(s) | 2149, 2376, 3528 |
| TfiI | GAWTC | 9 cut(s) | 204, 271, 590, 2939, 2947, 3671, 3738, 3875, 4159 |
| TscAI | CASTG | 7 cut(s) | 1798, 1998, 2135, 2426, 2990, 3196, 3642 |
| TseFI | GTSAC | 6 cut(s) | 988, 1363, 1787, 2632, 3187, 3479 |
| TseI | GCWGC | 7 cut(s) | 631, 860, 2085, 3230, 3626, 3640, 3944 |
| Tsp45I | GTSAC | 6 cut(s) | 988, 1363, 1787, 2632, 3187, 3479 |
| TspGWI | ACGGA | 2 cut(s) | 359, 1152 |
| TspRI | CASTG | 7 cut(s) | 1798, 1998, 2135, 2426, 2990, 3196, 3642 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3485 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1215, 2503 |
| VneI | GTGCAC | 2 cut(s) | 102, 3891 |
| VpaK11BI | GGWCC | 6 cut(s) | 329, 968, 1881, 2640, 3319, 4039 |
| VspI | ATTAAT | 1 cut(s) | 1905 |
| XapI | RAATTY | 8 cut(s) | 229, 500, 714, 724, 1609, 2573, 2962, 3364 |
| XceI | RCATGY | 2 cut(s) | 670, 2457 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 537, 4469 |
| XhoI | CTCGAG | 2 cut(s) | 3044, 4068 |
| XmiI | GTMKAC | 2 cut(s) | 25, 3383 |
| XmnI | GAANNNNTTC | 5 cut(s) | 589, 801, 1065, 1100, 1497 |
| XspI | CTAG | 7 cut(s) | 698, 782, 1295, 1376, 1391, 3197, 4295 |
| ZraI | GACGTC | 1 cut(s) | 6 |
| Zsp2I | ATGCAT | 2 cut(s) | 1467, 3514 |