Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001522

Physical Location & Seq

Genomic Coordinates Forward (+)

915686 .. 916447

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG006800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTACGCCCATGTGGTCGCGCGTGTCATAGAACCTTCACCTCAGTCAACCATCCGGTTCTTCCCACACCTCCCCGCCTCAACCTGCAAACGAACAATCTTCTCGGCGAAGTAGGGGCCCTCGCCACGCGCGGCCAACTCAACGAAGCGCTCTCACTGTTCTCCACTCTTCAACCGCCACCAACTCAAACTCACTCCAACCAAACCTACGCCACTCTCTTCCACGCATGCGCTCGCCACCACTGCCTCCAACAAGGCCTCTCTCTGCACCATTACATGCTTGCCCACAACCCCATTACTCCTCCTGACCTCTTTGTCTCCAACCACCTCATCAACATGTACGCCAAATCTGGCTACTTAGACTACGCCCGCCAACTGTTCGATGAAATGCCCAGAAGAAACCTCGTCACCTGGACCGCTCTCATTTCCGGGTACGCACAGCGGGGTCGAGCTGACAATGGTTTTCGTTTATTTGCTGCAATGTTGGTGTATTACCTCCCGAATGAGTTTGCATTTGCCAGCGTGCTAAGTTCATGTGACCATAGTGATGGTGGATATGGCCGGCAGGTACATGCCCTTGCTTTGAAAATGTCTTTGGATGCTTGCGTTTACGTTGCGAATGCTCTCATTACCATGTATAGCAAGGTGTGTGATCATGGAGGTGTGTTTGCTGTTAGTAGAGACGAGGCGTGGAAGGTGTTTCGAAGCACGGAATCCCGGAATCTTATATCGTGGAATTCCATGCTCTCATTGTCACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

253

Amino Acids

28.3

Weight (kDa)

8.87

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	108 - 134	1e-05	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71420
fragaria_vesca	FvH4_2g00530 FvH4_2g00530 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560 FvH4_2g00560
malus_domestica	MD05G1002500.v1.1
prunus_persica	Prupe.8G005700_v2.0.a1
pyrus_communis	pycom05g00240
rosa_chinensis	RchiOBHm_Chr6g0250571 RchiOBHm_Chr6g0250641 RchiOBHm_Chr6g0250661 RchiOBHm_Chr6g0250741 RchiOBHm_Chr6g0250751 RchiOBHm_Chr6g0250881 RchiOBHm_Chr6g0250901 RchiOBHm_Chr6g0250941 RchiOBHm_Chr6g0251021
rosa_laevigata	RLG00000001886 RLG00000015490 RLG00000015491 RLG00000015495 RLG00000015496 RLG00000015497 RLG00000015516 RLG00000015517 RLG00000015521 RLG00000015534
rosa_multiflora	Rmu_co8213794.1_g000001 Rmu_co8225142.1_g000001 Rmu_co8465043.1_g000001 Rmu_sc0001209.1_g000010 Rmu_sc0001209.1_g000028 Rmu_sc0001209.1_g000030 Rmu_sc0003527.1_g000008 Rmu_sc0026821.1_g000002 Rmu_sc0031313.1_g000001 Rmu_sc0037610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217150
rosa_rugosa	Rorug05G0498000 Rorug05G0499000 Rorug05G0499100 Rorug05G0499400
rosa_samantha	Rh6AG006800 Rh6AG007100 Rh6BG003500 Rh6BG003800 Rh6DG005100
rosa_wichuraiana	Rw6G000790 Rw6G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	2 cut(s)	93, 556
AccBSI	CCGCTC	1 cut(s)	419
AccII	CGCG	4 cut(s)	21, 23, 130, 132
AciI	CCGC	6 cut(s)	76, 132, 176, 370, 417, 442
AcoI	YGGCCR	2 cut(s)	133, 559
AcsI	RAATTY	1 cut(s)	736
AfaI	GTAC	3 cut(s)	341, 434, 570
AfeI	AGCGCT	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	173, 586
AjnI	CCWGG	1 cut(s)	410
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	1 cut(s)	452
AluI	AGCT	1 cut(s)	452
Alw26I	GTCTC	2 cut(s)	322, 675
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	4 cut(s)	117, 133, 256, 559
ApaI	GGGCCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	736
AspLEI	GCGC	4 cut(s)	23, 132, 151, 233
AspS9I	GGNCC	3 cut(s)	117, 118, 414
AsuC2I	CCSGG	2 cut(s)	430, 718
AsuHPI	GGTGA	2 cut(s)	31, 400
AsuII	TTCGAA	1 cut(s)	703
AvaII	GGWCC	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	2 cut(s)	60, 542
BciT130I	CCWGG	1 cut(s)	412
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	2 cut(s)	430, 718
BcoDI	GTCTC	2 cut(s)	322, 675
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	2 cut(s)	93, 556
BisI	GCNGC	2 cut(s)	133, 477
BlsI	GCNGC	2 cut(s)	134, 478
Bme1390I	CCNGG	3 cut(s)	412, 430, 718
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	3 cut(s)	117, 118, 414
BmiI	GGNNCC	2 cut(s)	118, 119
BmrFI	CCNGG	3 cut(s)	412, 430, 718
BmsI	GCATC	1 cut(s)	589
Bpu14I	TTCGAA	1 cut(s)	703
BpuMI	CCSGG	2 cut(s)	430, 718
BsaWI	WCCGGW	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	52, 604
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	4 cut(s)	21, 23, 130, 132
BshFI	GGCC	4 cut(s)	119, 135, 258, 561
BsiSI	CCGG	4 cut(s)	56, 429, 562, 718
BsmAI	GTCTC	2 cut(s)	322, 675
BsmBI	CGTCTC	1 cut(s)	675
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	4 cut(s)	119, 135, 258, 561
Bsp119I	TTCGAA	1 cut(s)	703
Bsp120I	GGGCCC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	652
BspACI	CCGC	6 cut(s)	76, 132, 176, 370, 417, 442
BspANI	GGCC	4 cut(s)	119, 135, 258, 561
BspCNI	CTCAG	1 cut(s)	56
BspFNI	CGCG	4 cut(s)	21, 23, 130, 132
BspLI	GGNNCC	2 cut(s)	118, 119
BspMI	ACCTGC	2 cut(s)	93, 556
BspT104I	TTCGAA	1 cut(s)	703
BsrBI	CCGCTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	561
BssMI	GATC	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	2 cut(s)	159, 378
Bst6I	CTCTTC	2 cut(s)	174, 224
BstBI	TTCGAA	1 cut(s)	703
BstC8I	GCNNGC	8 cut(s)	229, 235, 282, 370, 520, 524, 563, 604
BstDEI	CTNAG	3 cut(s)	43, 358, 527
BstF5I	GGATG	2 cut(s)	52, 604
BstFNI	CGCG	4 cut(s)	21, 23, 130, 132
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	4 cut(s)	23, 132, 151, 233
BstKTI	GATC	1 cut(s)	655
BstMAI	GTCTC	2 cut(s)	322, 675
BstMBI	GATC	1 cut(s)	652
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	4 cut(s)	231, 280, 340, 575
BstSCI	CCNGG	3 cut(s)	410, 428, 716
BstSLI	GKGCMC	1 cut(s)	121
BstUI	CGCG	4 cut(s)	21, 23, 130, 132
BstV1I	GCAGC	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	548
BsuRI	GGCC	4 cut(s)	119, 135, 258, 561
BtsCI	GGATG	2 cut(s)	52, 604
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	155, 241
BveI	ACCTGC	2 cut(s)	93, 556
Cac8I	GCNNGC	8 cut(s)	229, 235, 282, 370, 520, 524, 563, 604
CfoI	GCGC	4 cut(s)	23, 132, 151, 233
Cfr10I	RCCGGY	1 cut(s)	561
Cfr13I	GGNCC	3 cut(s)	117, 118, 414
Csp6I	GTAC	3 cut(s)	340, 433, 569
CviAII	CATG	9 cut(s)	12, 228, 277, 337, 534, 572, 634, 656, 742
CviJI	RGCY	6 cut(s)	119, 135, 258, 354, 452, 561
CviKI_1	RGCY	6 cut(s)	119, 135, 258, 354, 452, 561
CviQI	GTAC	3 cut(s)	340, 433, 569
DdeI	CTNAG	3 cut(s)	43, 358, 527
DpnI	GATC	1 cut(s)	654
DpnII	GATC	1 cut(s)	652
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	2 cut(s)	133, 559
Eam1104I	CTCTTC	2 cut(s)	174, 224
EarI	CTCTTC	2 cut(s)	174, 224
Eco147I	AGGCCT	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	414
Eco47III	AGCGCT	1 cut(s)	150
EcoO109I	RGGNCCY	2 cut(s)	117, 118
EcoRI	GAATTC	1 cut(s)	736
EcoRII	CCWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	675
FaeI	CATG	9 cut(s)	15, 231, 280, 340, 537, 575, 637, 659, 745
FatI	CATG	9 cut(s)	11, 227, 276, 336, 533, 571, 633, 655, 741
FauI	CCCGC	3 cut(s)	83, 377, 435
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	2 cut(s)	133, 477
FokI	GGATG	2 cut(s)	39, 611
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	133, 477
GlaI	GCGC	4 cut(s)	22, 131, 150, 232
GluI	GCNGC	2 cut(s)	133, 477
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	4 cut(s)	119, 135, 258, 561
HapII	CCGG	4 cut(s)	56, 429, 562, 718
HhaI	GCGC	4 cut(s)	23, 132, 151, 233
Hin1II	CATG	9 cut(s)	15, 231, 280, 340, 537, 575, 637, 659, 745
Hin6I	GCGC	4 cut(s)	21, 130, 149, 231
HinP1I	GCGC	4 cut(s)	21, 130, 149, 231
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	713, 721
HpaII	CCGG	4 cut(s)	56, 429, 562, 718
HphI	GGTGA	2 cut(s)	31, 400
Hpy166II	GTNNAC	2 cut(s)	49, 610
Hpy188III	TCNNGA	2 cut(s)	305, 499
Hpy8I	GTNNAC	2 cut(s)	49, 610
HpyAV	CCTTC	2 cut(s)	46, 688
HpyCH4III	ACNGT	2 cut(s)	159, 378
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	4 cut(s)	88, 268, 479, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	3 cut(s)	43, 358, 527
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	9 cut(s)	15, 231, 280, 340, 537, 575, 637, 659, 745
HspAI	GCGC	4 cut(s)	21, 130, 149, 231
KroI	GCCGGC	1 cut(s)	561
KroNI	GCCGGC	1 cut(s)	563
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	1 cut(s)	652
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	589
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	3 cut(s)	406, 536, 753
MalI	GATC	1 cut(s)	654
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	1 cut(s)	652
MboII	GAAGA	5 cut(s)	53, 92, 161, 211, 408
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	736
MmeI	TCCRAC	3 cut(s)	222, 274, 345
MroNI	GCCGGC	1 cut(s)	561
MslI	CAYNNNNRTG	4 cut(s)	335, 546, 632, 660
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	4 cut(s)	56, 429, 562, 718
MspR9I	CCNGG	3 cut(s)	412, 430, 718
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	412
MvnI	CGCG	4 cut(s)	21, 23, 130, 132
MwoI	GCNNNNNNNGC	1 cut(s)	243
NaeI	GCCGGC	1 cut(s)	563
NciI	CCSGG	2 cut(s)	430, 718
NdeII	GATC	1 cut(s)	652
NgoMIV	GCCGGC	1 cut(s)	561
NlaIII	CATG	9 cut(s)	15, 231, 280, 340, 537, 575, 637, 659, 745
NlaIV	GGNNCC	2 cut(s)	118, 119
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	3 cut(s)	406, 536, 753
NspI	RCATGY	4 cut(s)	231, 280, 340, 575
NspV	TTCGAA	1 cut(s)	703
PaeI	GCATGC	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	258
PciI	ACATGT	1 cut(s)	336
PctI	GAATGC	1 cut(s)	625
PdiI	GCCGGC	1 cut(s)	563
PfeI	GAWTC	2 cut(s)	713, 721
PfoI	TCCNGGA	1 cut(s)	716
PkrI	GCNGC	2 cut(s)	134, 478
PscI	ACATGT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	118, 119
PspOMI	GGGCCC	1 cut(s)	117
PspPI	GGNCC	3 cut(s)	117, 118, 414
RsaI	GTAC	3 cut(s)	341, 434, 570
RsaNI	GTAC	3 cut(s)	340, 433, 569
RseI	CAYNNNNRTG	4 cut(s)	335, 546, 632, 660
SatI	GCNGC	2 cut(s)	133, 477
Sau3AI	GATC	1 cut(s)	652
Sau96I	GGNCC	3 cut(s)	117, 118, 414
ScrFI	CCNGG	3 cut(s)	412, 430, 718
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	589
SfuI	TTCGAA	1 cut(s)	703
SinI	GGWCC	1 cut(s)	414
SmiMI	CAYNNNNRTG	4 cut(s)	335, 546, 632, 660
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	1 cut(s)	736
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	6 cut(s)	76, 132, 176, 370, 417, 442
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	410, 428, 716
TaaI	ACNGT	2 cut(s)	159, 378
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	3 cut(s)	381, 448, 703
TasI	AATT	1 cut(s)	736
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	713, 721
TscAI	CASTG	2 cut(s)	162, 248
TseFI	GTSAC	3 cut(s)	406, 536, 753
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	3 cut(s)	406, 536, 753
TspDTI	ATGAA	2 cut(s)	399, 522
TspGWI	ACGGA	1 cut(s)	725
TspRI	CASTG	2 cut(s)	162, 248
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	736
XceI	RCATGY	4 cut(s)	231, 280, 340, 575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.